RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 CEP85Q6P2H3 762 aa15.46■□□□□ 0.06
RNF4-222ENST00000541204 GAS2L3Q86XJ1 694 aa15.45■□□□□ 0.06
RNF4-222ENST00000541204 PLEKHM2Q8IWE5 1019 aa15.45■□□□□ 0.06
RNF4-222ENST00000541204 OTUD7AQ8TE49 926 aaPredicted RBP15.45■□□□□ 0.06
RNF4-222ENST00000541204 DDX17Q92841 729 aaKnown RBP15.45■□□□□ 0.06
RNF4-222ENST00000541204 GCP02774 474 aa15.45■□□□□ 0.06
RNF4-222ENST00000541204 TAF7Q15545 349 aaPredicted RBP15.45■□□□□ 0.06
RNF4-222ENST00000541204 NWD1Q149M9 1564 aa15.44■□□□□ 0.06
RNF4-222ENST00000541204 EIF2S2P20042 333 aaKnown RBP15.44■□□□□ 0.06
RNF4-222ENST00000541204 ANKRD44Q8N8A2 993 aa15.44■□□□□ 0.06
RNF4-222ENST00000541204 MARF1Q9Y4F3 1742 aaKnown RBP15.44■□□□□ 0.06
RNF4-222ENST00000541204 SSFA2P28290 1259 aa15.44■□□□□ 0.06
RNF4-222ENST00000541204 FLIIQ13045 1269 aa15.44■□□□□ 0.06
RNF4-222ENST00000541204 DCTPP1Q9H773 170 aa15.44■□□□□ 0.06
RNF4-222ENST00000541204 RTL1A6NKG5 1358 aa15.44■□□□□ 0.06
RNF4-222ENST00000541204 HTATSF1O43719 755 aaKnown RBP15.43■□□□□ 0.06
RNF4-222ENST00000541204 CCDC30Q5VVM6 783 aa15.43■□□□□ 0.06
RNF4-222ENST00000541204 KCNH5Q8NCM2 988 aa15.43■□□□□ 0.06
RNF4-222ENST00000541204 MPRIPQ6WCQ1 1025 aa15.43■□□□□ 0.06
RNF4-222ENST00000541204 ISY1Q9ULR0 285 aaKnown RBP15.43■□□□□ 0.06
RNF4-222ENST00000541204 KIF24Q5T7B8 1368 aa15.43■□□□□ 0.06
RNF4-222ENST00000541204 CLCN1P35523 988 aa15.42■□□□□ 0.06
RNF4-222ENST00000541204 ZC3H6P61129 1189 aaKnown RBP15.42■□□□□ 0.06
RNF4-222ENST00000541204 SKOR2Q2VWA4 1001 aaPredicted RBP15.42■□□□□ 0.06
RNF4-222ENST00000541204 KRT28Q7Z3Y7 464 aa15.42■□□□□ 0.06
RNF4-222ENST00000541204 ATP10DQ9P241 1426 aa15.42■□□□□ 0.06
RNF4-222ENST00000541204 KCNQ3O43525 872 aa15.41■□□□□ 0.06
RNF4-222ENST00000541204 HDGFL1Q5TGJ6 251 aa15.41■□□□□ 0.06
RNF4-222ENST00000541204 ZNF530Q6P9A1 599 aaPredicted RBP15.41■□□□□ 0.06
RNF4-222ENST00000541204 RPAP2Q8IXW5 612 aaPredicted RBP15.41■□□□□ 0.06
RNF4-222ENST00000541204 ADAMTSL3P82987 1691 aa15.41■□□□□ 0.06
RNF4-222ENST00000541204 TTC22Q5TAA0 569 aa15.41■□□□□ 0.06
RNF4-222ENST00000541204 PHAXQ9H814 394 aaKnown RBP15.41■□□□□ 0.06
RNF4-222ENST00000541204 AXIN2Q9Y2T1 843 aa15.41■□□□□ 0.06
RNF4-222ENST00000541204 ANXA1P04083 346 aa15.4■□□□□ 0.06
RNF4-222ENST00000541204 CCT4P50991 539 aaKnown RBP15.4■□□□□ 0.06
RNF4-222ENST00000541204 ANKRD24Q8TF21 1146 aa15.4■□□□□ 0.06
RNF4-222ENST00000541204 ZNF142P52746 1687 aaPredicted RBP15.4■□□□□ 0.06
RNF4-222ENST00000541204 PTMSP20962 102 aa15.39■□□□□ 0.05
RNF4-222ENST00000541204 EXOC6BQ9Y2D4 811 aa15.39■□□□□ 0.05
RNF4-222ENST00000541204 LTN1O94822 1766 aa15.39■□□□□ 0.05
RNF4-222ENST00000541204 AK9Q5TCS8 1911 aa15.39■□□□□ 0.05
RNF4-222ENST00000541204 TEFQ10587 303 aa15.39■□□□□ 0.05
RNF4-222ENST00000541204 ARHGEF25Q86VW2 580 aa15.39■□□□□ 0.05
RNF4-222ENST00000541204 NFAT5O94916 1531 aa15.38■□□□□ 0.05
RNF4-222ENST00000541204 NAP1L5Q96NT1 182 aaPredicted RBP15.38■□□□□ 0.05
RNF4-222ENST00000541204 USP26Q9BXU7 913 aa15.38■□□□□ 0.05
RNF4-222ENST00000541204 ERBB4Q15303 1308 aa15.38■□□□□ 0.05
RNF4-222ENST00000541204 RABEP1Q15276 862 aa15.38■□□□□ 0.05
RNF4-222ENST00000541204 GOLGA6L22H0YM25 854 aa15.37■□□□□ 0.05
RNF4-222ENST00000541204 BAG4O95429 457 aaKnown RBP15.37■□□□□ 0.05
RNF4-222ENST00000541204 ESPNB1AK53 854 aa15.37■□□□□ 0.05
RNF4-222ENST00000541204 GNAI2P04899 355 aa15.37■□□□□ 0.05
RNF4-222ENST00000541204 TSHZ3Q63HK5 1081 aa15.37■□□□□ 0.05
RNF4-222ENST00000541204 CABLES1Q8TDN4 633 aa15.37■□□□□ 0.05
RNF4-222ENST00000541204 C19orf44Q9H6X5 657 aa15.37■□□□□ 0.05
RNF4-222ENST00000541204 BTBD11A6QL63 1104 aa15.36■□□□□ 0.05
RNF4-222ENST00000541204 SDSP20132 328 aa15.36■□□□□ 0.05
RNF4-222ENST00000541204 HSPA2P54652 639 aa15.36■□□□□ 0.05
RNF4-222ENST00000541204 TRIM44Q96DX7 344 aaPredicted RBP15.36■□□□□ 0.05
RNF4-222ENST00000541204 ATF3P18847 181 aa15.36■□□□□ 0.05
RNF4-222ENST00000541204 PLEKHO1Q53GL0 409 aaPredicted RBP15.36■□□□□ 0.05
RNF4-222ENST00000541204 CHPF2Q9P2E5 772 aa15.36■□□□□ 0.05
RNF4-222ENST00000541204 DDX49Q9Y6V7 483 aaKnown RBP15.36■□□□□ 0.05
RNF4-222ENST00000541204 HMMRO75330 724 aa15.36■□□□□ 0.05
RNF4-222ENST00000541204 C1orf141Q5JVX7 400 aa15.36■□□□□ 0.05
RNF4-222ENST00000541204 CLEC17AQ6ZS10 378 aa15.36■□□□□ 0.05
RNF4-222ENST00000541204 PNMA6EA0A0J9YXQ4 647 aa15.35■□□□□ 0.05
RNF4-222ENST00000541204 EIF4A1P60842 406 aaKnown RBP15.35■□□□□ 0.05
RNF4-222ENST00000541204 LRRFIP2Q9Y608 721 aaKnown RBP15.35■□□□□ 0.05
RNF4-222ENST00000541204 PKP1Q13835 747 aa15.34■□□□□ 0.05
RNF4-222ENST00000541204 KLHL40Q2TBA0 621 aa15.34■□□□□ 0.05
RNF4-222ENST00000541204 AKAP4Q5JQC9 854 aa15.34■□□□□ 0.05
RNF4-222ENST00000541204 MCTP1Q6DN14 999 aa15.34■□□□□ 0.05
RNF4-222ENST00000541204 CEMIPQ8WUJ3 1361 aa15.33■□□□□ 0.05
RNF4-222ENST00000541204 NLRP2Q9NX02 1062 aa15.33■□□□□ 0.04
RNF4-222ENST00000541204 C1orf167Q5SNV9 1468 aa15.33■□□□□ 0.04
RNF4-222ENST00000541204 RGPD2P0DJD1 1756 aa15.33■□□□□ 0.04
RNF4-222ENST00000541204 PRAMEF22A3QJZ6 481 aa15.33■□□□□ 0.04
RNF4-222ENST00000541204 TMEM94Q12767 1356 aa15.32■□□□□ 0.04
RNF4-222ENST00000541204 GNAI3P08754 354 aa15.32■□□□□ 0.04
RNF4-222ENST00000541204 CASC1Q6TDU7 716 aa15.32■□□□□ 0.04
RNF4-222ENST00000541204 USP44Q9H0E7 712 aa15.32■□□□□ 0.04
RNF4-222ENST00000541204 PXDNQ92626 1479 aa15.32■□□□□ 0.04
RNF4-222ENST00000541204 RNMTO43148 476 aaKnown RBP15.32■□□□□ 0.04
RNF4-222ENST00000541204 LRRC37A3O60309 1634 aa15.32■□□□□ 0.04
RNF4-222ENST00000541204 NUCB2P80303 420 aa15.31■□□□□ 0.04
RNF4-222ENST00000541204 CHRNA2Q15822 529 aa15.31■□□□□ 0.04
RNF4-222ENST00000541204 PI4KAP2A4QPH2 592 aa15.31■□□□□ 0.04
RNF4-222ENST00000541204 UBTFL1P0CB47 393 aaPredicted RBP15.31■□□□□ 0.04
RNF4-222ENST00000541204 NASPP49321 788 aaPredicted RBP15.31■□□□□ 0.04
RNF4-222ENST00000541204 ZGPATQ8N5A5 531 aaKnown RBP15.31■□□□□ 0.04
RNF4-222ENST00000541204 PI4KAP1Q8N8J0 262 aa15.31■□□□□ 0.04
RNF4-222ENST00000541204 BABAM1Q9NWV8 329 aa15.31■□□□□ 0.04
RNF4-222ENST00000541204 USP54Q70EL1 1684 aa15.31■□□□□ 0.04
RNF4-222ENST00000541204 CYP2E1P05181 493 aaPredicted RBP15.3■□□□□ 0.04
RNF4-222ENST00000541204 CSB-PGBD3P0DP91 1061 aa15.3■□□□□ 0.04
RNF4-222ENST00000541204 NCLP19338 710 aaKnown RBP15.3■□□□□ 0.04
RNF4-222ENST00000541204 AMOTQ4VCS5 1084 aa15.3■□□□□ 0.04
RNF4-222ENST00000541204 ST18O60284 1047 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms