RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 BABAM1Q9NWV8 329 aa22.96■■□□□ 1.27
CLSTN3-210ENST00000540931 KDM6AO15550 1401 aaPredicted RBP22.96■■□□□ 1.27
CLSTN3-210ENST00000540931 ADAMTS7Q9UKP4 1686 aa22.96■■□□□ 1.27
CLSTN3-210ENST00000540931 DOT1LQ8TEK3 1739 aa22.95■■□□□ 1.26
CLSTN3-210ENST00000540931 IL17REQ8NFR9 667 aa22.94■■□□□ 1.26
CLSTN3-210ENST00000540931 MRC1P22897 1456 aa22.93■■□□□ 1.26
CLSTN3-210ENST00000540931 NFATC2IPQ8NCF5 419 aa22.93■■□□□ 1.26
CLSTN3-210ENST00000540931 LGR6Q9HBX8 967 aa22.93■■□□□ 1.26
CLSTN3-210ENST00000540931 KCNQ2O43526 872 aa22.92■■□□□ 1.26
CLSTN3-210ENST00000540931 TAF7Q15545 349 aaPredicted RBP22.92■■□□□ 1.26
CLSTN3-210ENST00000540931 NEUROD2Q15784 382 aa22.92■■□□□ 1.26
CLSTN3-210ENST00000540931 PIGBQ92521 554 aa22.91■■□□□ 1.26
CLSTN3-210ENST00000540931 DLG5Q8TDM6 1919 aa22.9■■□□□ 1.26
CLSTN3-210ENST00000540931 TTC5Q8N0Z6 440 aa22.9■■□□□ 1.26
CLSTN3-210ENST00000540931 SPON1Q9HCB6 807 aa22.9■■□□□ 1.26
CLSTN3-210ENST00000540931 RGPD3A6NKT7 1758 aaPredicted RBP22.9■■□□□ 1.26
CLSTN3-210ENST00000540931 RGPD4Q7Z3J3 1758 aa22.9■■□□□ 1.26
CLSTN3-210ENST00000540931 ITGB4P16144 1822 aa22.89■■□□□ 1.26
CLSTN3-210ENST00000540931 YY1P25490 414 aa22.89■■□□□ 1.25
CLSTN3-210ENST00000540931 SLC27A3Q5K4L6 730 aa22.89■■□□□ 1.25
CLSTN3-210ENST00000540931 MCM10Q7L590 875 aa22.89■■□□□ 1.25
CLSTN3-210ENST00000540931 TOGARAM1Q9Y4F4 1720 aa22.88■■□□□ 1.25
CLSTN3-210ENST00000540931 BTBD11A6QL63 1104 aa22.87■■□□□ 1.25
CLSTN3-210ENST00000540931 TRIM35Q9UPQ4 493 aa22.87■■□□□ 1.25
CLSTN3-210ENST00000540931 RRP7AQ9Y3A4 280 aaKnown RBP22.87■■□□□ 1.25
CLSTN3-210ENST00000540931 BTAF1O14981 1849 aa22.87■■□□□ 1.25
CLSTN3-210ENST00000540931 VIRMAQ69YN4 1812 aaKnown RBP22.87■■□□□ 1.25
CLSTN3-210ENST00000540931 WDR63Q8IWG1 891 aa22.86■■□□□ 1.25
CLSTN3-210ENST00000540931 IL16Q14005 1332 aa22.85■■□□□ 1.25
CLSTN3-210ENST00000540931 GNAI1P63096 354 aa22.85■■□□□ 1.25
CLSTN3-210ENST00000540931 PALLDQ8WX93 1383 aa22.85■■□□□ 1.25
CLSTN3-210ENST00000540931 ZNF790Q6PG37 636 aa22.84■■□□□ 1.25
CLSTN3-210ENST00000540931 WWC1Q8IX03 1113 aa22.84■■□□□ 1.25
CLSTN3-210ENST00000540931 VSIG10Q8N0Z9 540 aa22.84■■□□□ 1.25
CLSTN3-210ENST00000540931 CHMP4AQ9BY43 222 aa22.84■■□□□ 1.25
CLSTN3-210ENST00000540931 ATG3Q9NT62 314 aa22.84■■□□□ 1.25
CLSTN3-210ENST00000540931 PPP1R1BQ9UD71 204 aaPredicted RBP22.84■■□□□ 1.25
CLSTN3-210ENST00000540931 DCTN1Q14203 1278 aa22.83■■□□□ 1.25
CLSTN3-210ENST00000540931 CFAP44Q96MT7 982 aa22.83■■□□□ 1.25
CLSTN3-210ENST00000540931 TEX13AQ9BXU3 409 aaPredicted RBP22.83■■□□□ 1.25
CLSTN3-210ENST00000540931 IFT57Q9NWB7 429 aa22.83■■□□□ 1.25
CLSTN3-210ENST00000540931 PTF1AQ7RTS3 328 aa22.81■■□□□ 1.24
CLSTN3-210ENST00000540931 FMNL2Q96PY5 1086 aa22.81■■□□□ 1.24
CLSTN3-210ENST00000540931 ASAP1Q9ULH1 1129 aa22.81■■□□□ 1.24
CLSTN3-210ENST00000540931 SIPA1L3O60292 1781 aaPredicted RBP22.81■■□□□ 1.24
CLSTN3-210ENST00000540931 TXNRD1Q16881 649 aa22.8■■□□□ 1.24
CLSTN3-210ENST00000540931 ZNF831Q5JPB2 1677 aa22.79■■□□□ 1.24
CLSTN3-210ENST00000540931 LOC102724428A0A0B4J2F2 783 aa22.79■■□□□ 1.24
CLSTN3-210ENST00000540931 SIK1P57059 783 aa22.79■■□□□ 1.24
CLSTN3-210ENST00000540931 ANO8Q9HCE9 1232 aaPredicted RBP22.79■■□□□ 1.24
CLSTN3-210ENST00000540931 TSPYL4Q9UJ04 414 aa22.79■■□□□ 1.24
CLSTN3-210ENST00000540931 CCNL1Q9UK58 526 aaPredicted RBP22.79■■□□□ 1.24
CLSTN3-210ENST00000540931 CHL1O00533 1208 aa22.78■■□□□ 1.24
CLSTN3-210ENST00000540931 PROM2Q8N271 834 aa22.78■■□□□ 1.24
CLSTN3-210ENST00000540931 RBM42Q9BTD8 480 aaKnown RBP22.77■■□□□ 1.24
CLSTN3-210ENST00000540931 MYH16Q9H6N6 1097 aa22.77■■□□□ 1.24
CLSTN3-210ENST00000540931 SOS1Q07889 1333 aaPredicted RBP22.77■■□□□ 1.24
CLSTN3-210ENST00000540931 LY75O60449 1722 aa22.77■■□□□ 1.23
CLSTN3-210ENST00000540931 DCAF8L1A6NGE4 600 aa22.76■■□□□ 1.23
CLSTN3-210ENST00000540931 ATP6V1AP38606 617 aa22.76■■□□□ 1.23
CLSTN3-210ENST00000540931 THUMPD2Q9BTF0 503 aaKnown RBP22.76■■□□□ 1.23
CLSTN3-210ENST00000540931 PDGFDQ9GZP0 370 aaPredicted RBP22.76■■□□□ 1.23
CLSTN3-210ENST00000540931 PAPPAQ13219 1627 aa22.75■■□□□ 1.23
CLSTN3-210ENST00000540931 CASZ1Q86V15 1759 aa22.75■■□□□ 1.23
CLSTN3-210ENST00000540931 PTCD1O75127 700 aaKnown RBP22.74■■□□□ 1.23
CLSTN3-210ENST00000540931 STARD3NLO95772 234 aa22.74■■□□□ 1.23
CLSTN3-210ENST00000540931 SNRPA1P09661 255 aaKnown RBP22.74■■□□□ 1.23
CLSTN3-210ENST00000540931 ZNF853P0CG23 659 aa22.74■■□□□ 1.23
CLSTN3-210ENST00000540931 GOLGA2Q08379 1002 aa22.74■■□□□ 1.23
CLSTN3-210ENST00000540931 SLC39A6Q13433 755 aa22.74■■□□□ 1.23
CLSTN3-210ENST00000540931 HEG1Q9ULI3 1381 aa22.74■■□□□ 1.23
CLSTN3-210ENST00000540931 HNRNPUQ00839 825 aaKnown RBP eCLIP22.73■■□□□ 1.23
CLSTN3-210ENST00000540931 LAS1LQ9Y4W2 734 aaKnown RBP22.73■■□□□ 1.23
CLSTN3-210ENST00000540931 E9PSI1 815 aa22.72■■□□□ 1.23
CLSTN3-210ENST00000540931 HOXB7P09629 217 aa22.72■■□□□ 1.23
CLSTN3-210ENST00000540931 SALL2Q9Y467 1007 aaPredicted RBP22.72■■□□□ 1.23
CLSTN3-210ENST00000540931 ZNF521Q96K83 1311 aa22.72■■□□□ 1.23
CLSTN3-210ENST00000540931 CICQ96RK0 1608 aaPredicted RBP22.71■■□□□ 1.23
CLSTN3-210ENST00000540931 UBR2Q8IWV8 1755 aa22.71■■□□□ 1.23
CLSTN3-210ENST00000540931 EIF4A1P60842 406 aaKnown RBP22.71■■□□□ 1.23
CLSTN3-210ENST00000540931 RC3H1Q5TC82 1133 aaKnown RBP22.71■■□□□ 1.23
CLSTN3-210ENST00000540931 ZNF496Q96IT1 587 aaPredicted RBP22.71■■□□□ 1.23
CLSTN3-210ENST00000540931 PTGER2P43116 358 aa22.7■■□□□ 1.22
CLSTN3-210ENST00000540931 KDM3BQ7LBC6 1761 aa22.7■■□□□ 1.22
CLSTN3-210ENST00000540931 KCPQ6ZWJ8 1503 aa22.69■■□□□ 1.22
CLSTN3-210ENST00000540931 ZBTB7AO95365 584 aa22.69■■□□□ 1.22
CLSTN3-210ENST00000540931 FLAD1Q8NFF5 587 aa22.69■■□□□ 1.22
CLSTN3-210ENST00000540931 STK32BQ9NY57 414 aa22.69■■□□□ 1.22
CLSTN3-210ENST00000540931 ZBED9Q6R2W3 1325 aa22.68■■□□□ 1.22
CLSTN3-210ENST00000540931 MBIPQ9NS73 344 aa22.68■■□□□ 1.22
CLSTN3-210ENST00000540931 CNTNAP4Q9C0A0 1308 aa22.67■■□□□ 1.22
CLSTN3-210ENST00000540931 NPM2Q86SE8 214 aaKnown RBP22.67■■□□□ 1.22
CLSTN3-210ENST00000540931 MIS18AQ9NYP9 233 aa22.67■■□□□ 1.22
CLSTN3-210ENST00000540931 GIGYF1O75420 1035 aaPredicted RBP22.66■■□□□ 1.22
CLSTN3-210ENST00000540931 LRRC4BQ9NT99 713 aa22.66■■□□□ 1.22
CLSTN3-210ENST00000540931 ERBB4Q15303 1308 aa22.65■■□□□ 1.22
CLSTN3-210ENST00000540931 AK7Q96M32 723 aa22.65■■□□□ 1.22
CLSTN3-210ENST00000540931 ATF5Q9Y2D1 282 aaPredicted RBP22.65■■□□□ 1.22
CLSTN3-210ENST00000540931 C5P01031 1676 aa22.65■■□□□ 1.22
CLSTN3-210ENST00000540931 ADRA2BP18089 450 aa22.64■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms