RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 AKAP12Q02952 1782 aa20.9■□□□□ 0.94
USP28-208ENST00000540438 UNC5CLQ8IV45 518 aa20.9■□□□□ 0.94
USP28-208ENST00000540438 RPAP2Q8IXW5 612 aaPredicted RBP20.9■□□□□ 0.94
USP28-208ENST00000540438 GNAI2P04899 355 aa20.89■□□□□ 0.94
USP28-208ENST00000540438 TAF7Q15545 349 aaPredicted RBP20.89■□□□□ 0.94
USP28-208ENST00000540438 ZNF530Q6P9A1 599 aaPredicted RBP20.89■□□□□ 0.94
USP28-208ENST00000540438 JARID2Q92833 1246 aaPredicted RBP20.89■□□□□ 0.94
USP28-208ENST00000540438 DIP2AQ14689 1571 aa20.89■□□□□ 0.93
USP28-208ENST00000540438 NBPF7P0C2Y1 421 aaPredicted RBP20.88■□□□□ 0.93
USP28-208ENST00000540438 CCDC30Q5VVM6 783 aa20.88■□□□□ 0.93
USP28-208ENST00000540438 AXIN2Q9Y2T1 843 aa20.88■□□□□ 0.93
USP28-208ENST00000540438 ZGPATQ8N5A5 531 aaKnown RBP20.88■□□□□ 0.93
USP28-208ENST00000540438 PTPRCP08575 1304 aa20.87■□□□□ 0.93
USP28-208ENST00000540438 PI4KAP2A4QPH2 592 aa20.87■□□□□ 0.93
USP28-208ENST00000540438 PI4KAP1Q8N8J0 262 aa20.87■□□□□ 0.93
USP28-208ENST00000540438 AK9Q5TCS8 1911 aa20.87■□□□□ 0.93
USP28-208ENST00000540438 ARHGEF10O15013 1369 aa20.87■□□□□ 0.93
USP28-208ENST00000540438 PDE1AP54750 535 aa20.86■□□□□ 0.93
USP28-208ENST00000540438 SLC39A6Q13433 755 aa20.86■□□□□ 0.93
USP28-208ENST00000540438 PROSER3Q2NL68 480 aa20.86■□□□□ 0.93
USP28-208ENST00000540438 USP44Q9H0E7 712 aa20.86■□□□□ 0.93
USP28-208ENST00000540438 K7ELQ4 463 aaPredicted RBP20.86■□□□□ 0.93
USP28-208ENST00000540438 NCLP19338 710 aaKnown RBP20.86■□□□□ 0.93
USP28-208ENST00000540438 TEFQ10587 303 aa20.86■□□□□ 0.93
USP28-208ENST00000540438 SURF6O75683 361 aaKnown RBP20.85■□□□□ 0.93
USP28-208ENST00000540438 USP26Q9BXU7 913 aa20.85■□□□□ 0.93
USP28-208ENST00000540438 IL25Q9H293 177 aa20.84■□□□□ 0.93
USP28-208ENST00000540438 KIAA0232Q92628 1395 aa20.84■□□□□ 0.93
USP28-208ENST00000540438 UBTFL1P0CB47 393 aaPredicted RBP20.84■□□□□ 0.93
USP28-208ENST00000540438 CCT4P50991 539 aaKnown RBP20.84■□□□□ 0.93
USP28-208ENST00000540438 DDX54Q8TDD1 881 aaKnown RBP20.84■□□□□ 0.93
USP28-208ENST00000540438 HMMRO75330 724 aa20.83■□□□□ 0.93
USP28-208ENST00000540438 ANO2Q9NQ90 1003 aa20.83■□□□□ 0.93
USP28-208ENST00000540438 BTBD11A6QL63 1104 aa20.83■□□□□ 0.93
USP28-208ENST00000540438 UPF3BQ9BZI7 483 aaKnown RBP20.83■□□□□ 0.93
USP28-208ENST00000540438 MAP3K5Q99683 1374 aa20.83■□□□□ 0.92
USP28-208ENST00000540438 GCP02774 474 aa20.83■□□□□ 0.92
USP28-208ENST00000540438 CHRNA2Q15822 529 aa20.83■□□□□ 0.92
USP28-208ENST00000540438 HAP1P54257 671 aaPredicted RBP20.82■□□□□ 0.92
USP28-208ENST00000540438 PPP1R42Q7Z4L9 355 aa20.82■□□□□ 0.92
USP28-208ENST00000540438 CWF19L2Q2TBE0 894 aaKnown RBP20.82■□□□□ 0.92
USP28-208ENST00000540438 PALD1Q9ULE6 856 aa20.82■□□□□ 0.92
USP28-208ENST00000540438 SRGAP3O43295 1099 aa20.81■□□□□ 0.92
USP28-208ENST00000540438 LRRCC1Q9C099 1032 aa20.81■□□□□ 0.92
USP28-208ENST00000540438 PROSER2Q86WR7 435 aaPredicted RBP20.81■□□□□ 0.92
USP28-208ENST00000540438 PA2G4Q9UQ80 394 aaKnown RBP20.81■□□□□ 0.92
USP28-208ENST00000540438 KDRP35968 1356 aa20.81■□□□□ 0.92
USP28-208ENST00000540438 PIK3C2AO00443 1686 aa20.8■□□□□ 0.92
USP28-208ENST00000540438 XRCC6P12956 609 aaKnown RBP eCLIP20.8■□□□□ 0.92
USP28-208ENST00000540438 IP6K1Q92551 441 aa20.8■□□□□ 0.92
USP28-208ENST00000540438 ANO8Q9HCE9 1232 aaPredicted RBP20.8■□□□□ 0.92
USP28-208ENST00000540438 CCDC9Q9Y3X0 531 aaKnown RBP20.8■□□□□ 0.92
USP28-208ENST00000540438 MYL6BP14649 208 aa20.8■□□□□ 0.92
USP28-208ENST00000540438 NEK4P51957 841 aa20.79■□□□□ 0.92
USP28-208ENST00000540438 OS9Q13438 667 aaPredicted RBP20.79■□□□□ 0.92
USP28-208ENST00000540438 NRKQ7Z2Y5 1582 aa20.79■□□□□ 0.92
USP28-208ENST00000540438 MX1P20591 662 aa20.79■□□□□ 0.92
USP28-208ENST00000540438 ANKRD24Q8TF21 1146 aa20.79■□□□□ 0.92
USP28-208ENST00000540438 NLRP2Q9NX02 1062 aa20.79■□□□□ 0.92
USP28-208ENST00000540438 EIF4A1P60842 406 aaKnown RBP20.78■□□□□ 0.92
USP28-208ENST00000540438 MCTP1Q6DN14 999 aa20.78■□□□□ 0.92
USP28-208ENST00000540438 GOLGA6L3A6NEY3 463 aa20.77■□□□□ 0.92
USP28-208ENST00000540438 KLHDC4Q8TBB5 520 aa20.77■□□□□ 0.91
USP28-208ENST00000540438 SNX21Q969T3 373 aa20.77■□□□□ 0.91
USP28-208ENST00000540438 SRCIN1Q9C0H9 1055 aa20.77■□□□□ 0.91
USP28-208ENST00000540438 SOS1Q07889 1333 aaPredicted RBP20.77■□□□□ 0.91
USP28-208ENST00000540438 ATP8B2P98198 1209 aa20.76■□□□□ 0.91
USP28-208ENST00000540438 CASC1Q6TDU7 716 aa20.76■□□□□ 0.91
USP28-208ENST00000540438 SIL1Q9H173 461 aa20.76■□□□□ 0.91
USP28-208ENST00000540438 GAS2L3Q86XJ1 694 aa20.76■□□□□ 0.91
USP28-208ENST00000540438 C1orf141Q5JVX7 400 aa20.75■□□□□ 0.91
USP28-208ENST00000540438 GNAI3P08754 354 aa20.75■□□□□ 0.91
USP28-208ENST00000540438 CPA1P15085 419 aa20.75■□□□□ 0.91
USP28-208ENST00000540438 KRT28Q7Z3Y7 464 aa20.75■□□□□ 0.91
USP28-208ENST00000540438 ERC2O15083 957 aa20.74■□□□□ 0.91
USP28-208ENST00000540438 CSB-PGBD3P0DP91 1061 aa20.74■□□□□ 0.91
USP28-208ENST00000540438 TOPAZ1Q8N9V7 1692 aa20.74■□□□□ 0.91
USP28-208ENST00000540438 ARHGAP23Q9P227 1491 aa20.74■□□□□ 0.91
USP28-208ENST00000540438 FER1L4A9Z1Z3 1794 aa20.74■□□□□ 0.91
USP28-208ENST00000540438 DDIT3P35638 169 aa20.73■□□□□ 0.91
USP28-208ENST00000540438 HSPA2P54652 639 aa20.73■□□□□ 0.91
USP28-208ENST00000540438 MAP3K2Q9Y2U5 619 aa20.73■□□□□ 0.91
USP28-208ENST00000540438 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.73■□□□□ 0.91
USP28-208ENST00000540438 SPG7Q9UQ90 795 aa20.73■□□□□ 0.91
USP28-208ENST00000540438 RAB3GAP1Q15042 981 aa20.72■□□□□ 0.91
USP28-208ENST00000540438 C9orf78Q9NZ63 289 aaPredicted RBP20.72■□□□□ 0.91
USP28-208ENST00000540438 DNAAF4Q8WXU2 420 aa20.72■□□□□ 0.91
USP28-208ENST00000540438 SLIT1O75093 1534 aa20.71■□□□□ 0.91
USP28-208ENST00000540438 CWC27Q6UX04 472 aaKnown RBP20.71■□□□□ 0.91
USP28-208ENST00000540438 RABEP1Q15276 862 aa20.7■□□□□ 0.9
USP28-208ENST00000540438 DDX49Q9Y6V7 483 aaKnown RBP20.7■□□□□ 0.9
USP28-208ENST00000540438 NFATC2IPQ8NCF5 419 aa20.7■□□□□ 0.9
USP28-208ENST00000540438 NDUFB9Q9Y6M9 179 aa20.7■□□□□ 0.9
USP28-208ENST00000540438 PLEKHO1Q53GL0 409 aaPredicted RBP20.69■□□□□ 0.9
USP28-208ENST00000540438 ESYT1Q9BSJ8 1104 aa20.69■□□□□ 0.9
USP28-208ENST00000540438 RBM27Q9P2N5 1060 aaKnown RBP20.69■□□□□ 0.9
USP28-208ENST00000540438 RGPD1P0DJD0 1748 aa20.69■□□□□ 0.9
USP28-208ENST00000540438 RNMTO43148 476 aaKnown RBP20.69■□□□□ 0.9
USP28-208ENST00000540438 CHMLP26374 656 aa20.69■□□□□ 0.9
USP28-208ENST00000540438 GDPD2Q9HCC8 539 aa20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms