RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 IL16Q14005 1332 aa24.7■■□□□ 1.54
TNFRSF1A-213ENST00000540022 CALD1Q05682 793 aaKnown RBP24.7■■□□□ 1.54
TNFRSF1A-213ENST00000540022 SLFN5Q08AF3 891 aa24.7■■□□□ 1.54
TNFRSF1A-213ENST00000540022 CAMKK2Q96RR4 588 aa24.7■■□□□ 1.54
TNFRSF1A-213ENST00000540022 PTF1AQ7RTS3 328 aa24.68■■□□□ 1.54
TNFRSF1A-213ENST00000540022 ADAMTS7Q9UKP4 1686 aa24.68■■□□□ 1.54
TNFRSF1A-213ENST00000540022 E9PSI1 815 aa24.67■■□□□ 1.54
TNFRSF1A-213ENST00000540022 ACSBG1Q96GR2 724 aa24.67■■□□□ 1.54
TNFRSF1A-213ENST00000540022 NUP188Q5SRE5 1749 aa24.67■■□□□ 1.54
TNFRSF1A-213ENST00000540022 RGPD3A6NKT7 1758 aaPredicted RBP24.66■■□□□ 1.54
TNFRSF1A-213ENST00000540022 RGPD4Q7Z3J3 1758 aa24.66■■□□□ 1.54
TNFRSF1A-213ENST00000540022 ZNF853P0CG23 659 aa24.66■■□□□ 1.54
TNFRSF1A-213ENST00000540022 LAS1LQ9Y4W2 734 aaKnown RBP24.66■■□□□ 1.54
TNFRSF1A-213ENST00000540022 TEFQ10587 303 aa24.66■■□□□ 1.54
TNFRSF1A-213ENST00000540022 TRMT2AQ8IZ69 625 aaKnown RBP24.66■■□□□ 1.54
TNFRSF1A-213ENST00000540022 CFAP44Q96MT7 982 aa24.66■■□□□ 1.54
TNFRSF1A-213ENST00000540022 IFT57Q9NWB7 429 aa24.66■■□□□ 1.54
TNFRSF1A-213ENST00000540022 KCNQ2O43526 872 aa24.65■■□□□ 1.54
TNFRSF1A-213ENST00000540022 GNAI1P63096 354 aa24.64■■□□□ 1.53
TNFRSF1A-213ENST00000540022 TAF7Q15545 349 aaPredicted RBP24.64■■□□□ 1.53
TNFRSF1A-213ENST00000540022 DUSP27Q5VZP5 1158 aa24.64■■□□□ 1.53
TNFRSF1A-213ENST00000540022 SLC52A2Q9HAB3 445 aa24.64■■□□□ 1.53
TNFRSF1A-213ENST00000540022 CHL1O00533 1208 aa24.63■■□□□ 1.53
TNFRSF1A-213ENST00000540022 TSR2Q969E8 191 aaKnown RBP24.63■■□□□ 1.53
TNFRSF1A-213ENST00000540022 MIS18AQ9NYP9 233 aa24.63■■□□□ 1.53
TNFRSF1A-213ENST00000540022 NHSQ6T4R5 1651 aa24.62■■□□□ 1.53
TNFRSF1A-213ENST00000540022 ERVV-2B6SEH9 535 aa24.62■■□□□ 1.53
TNFRSF1A-213ENST00000540022 NFATC2IPQ8NCF5 419 aa24.62■■□□□ 1.53
TNFRSF1A-213ENST00000540022 MYH16Q9H6N6 1097 aa24.62■■□□□ 1.53
TNFRSF1A-213ENST00000540022 MRC1P22897 1456 aa24.62■■□□□ 1.53
TNFRSF1A-213ENST00000540022 CABP4P57796 275 aa24.61■■□□□ 1.53
TNFRSF1A-213ENST00000540022 BCL11BQ9C0K0 894 aaPredicted RBP24.61■■□□□ 1.53
TNFRSF1A-213ENST00000540022 MBIPQ9NS73 344 aa24.61■■□□□ 1.53
TNFRSF1A-213ENST00000540022 FANCIQ9NVI1 1328 aa24.61■■□□□ 1.53
TNFRSF1A-213ENST00000540022 TOGARAM1Q9Y4F4 1720 aa24.61■■□□□ 1.53
TNFRSF1A-213ENST00000540022 PRIM1P49642 420 aaKnown RBP24.61■■□□□ 1.53
TNFRSF1A-213ENST00000540022 SCN11AQ9UI33 1791 aa24.6■■□□□ 1.53
TNFRSF1A-213ENST00000540022 PSDA5PKW4 1024 aaPredicted RBP24.59■■□□□ 1.53
TNFRSF1A-213ENST00000540022 TSPYL4Q9UJ04 414 aa24.59■■□□□ 1.53
TNFRSF1A-213ENST00000540022 DOT1LQ8TEK3 1739 aa24.58■■□□□ 1.53
TNFRSF1A-213ENST00000540022 SYTL4Q96C24 671 aaPredicted RBP24.58■■□□□ 1.53
TNFRSF1A-213ENST00000540022 BTBD11A6QL63 1104 aa24.57■■□□□ 1.52
TNFRSF1A-213ENST00000540022 PLSCR1O15162 318 aa24.57■■□□□ 1.52
TNFRSF1A-213ENST00000540022 BABAM1Q9NWV8 329 aa24.57■■□□□ 1.52
TNFRSF1A-213ENST00000540022 BTAF1O14981 1849 aa24.56■■□□□ 1.52
TNFRSF1A-213ENST00000540022 TMOD3Q9NYL9 352 aa24.56■■□□□ 1.52
TNFRSF1A-213ENST00000540022 KCNQ3O43525 872 aa24.55■■□□□ 1.52
TNFRSF1A-213ENST00000540022 PIGBQ92521 554 aa24.55■■□□□ 1.52
TNFRSF1A-213ENST00000540022 EXOSC9Q06265 439 aaKnown RBP24.54■■□□□ 1.52
TNFRSF1A-213ENST00000540022 SLC39A6Q13433 755 aa24.54■■□□□ 1.52
TNFRSF1A-213ENST00000540022 R3HDM1Q15032 1099 aaKnown RBP24.54■■□□□ 1.52
TNFRSF1A-213ENST00000540022 CENPBP07199 599 aaPredicted RBP24.53■■□□□ 1.52
TNFRSF1A-213ENST00000540022 SIPA1L3O60292 1781 aaPredicted RBP24.53■■□□□ 1.52
TNFRSF1A-213ENST00000540022 VIRMAQ69YN4 1812 aaKnown RBP24.52■■□□□ 1.52
TNFRSF1A-213ENST00000540022 ZNF790Q6PG37 636 aa24.51■■□□□ 1.51
TNFRSF1A-213ENST00000540022 LRP5O75197 1615 aa24.51■■□□□ 1.51
TNFRSF1A-213ENST00000540022 KRT24Q2M2I5 525 aa24.51■■□□□ 1.51
TNFRSF1A-213ENST00000540022 PROM2Q8N271 834 aa24.5■■□□□ 1.51
TNFRSF1A-213ENST00000540022 EIF4A1P60842 406 aaKnown RBP24.49■■□□□ 1.51
TNFRSF1A-213ENST00000540022 TSPYL6Q8N831 410 aa24.49■■□□□ 1.51
TNFRSF1A-213ENST00000540022 C8orf58Q8NAV2 365 aa24.49■■□□□ 1.51
TNFRSF1A-213ENST00000540022 ITGB4P16144 1822 aa24.47■■□□□ 1.51
TNFRSF1A-213ENST00000540022 KDM3BQ7LBC6 1761 aa24.47■■□□□ 1.51
TNFRSF1A-213ENST00000540022 TTC5Q8N0Z6 440 aa24.47■■□□□ 1.51
TNFRSF1A-213ENST00000540022 ATG3Q9NT62 314 aa24.47■■□□□ 1.51
TNFRSF1A-213ENST00000540022 ASAP1Q9ULH1 1129 aa24.47■■□□□ 1.51
TNFRSF1A-213ENST00000540022 ELL2O00472 640 aaPredicted RBP24.46■■□□□ 1.51
TNFRSF1A-213ENST00000540022 NBPF14Q5TI25 921 aa24.45■■□□□ 1.51
TNFRSF1A-213ENST00000540022 ZNF496Q96IT1 587 aaPredicted RBP24.45■■□□□ 1.51
TNFRSF1A-213ENST00000540022 TXNRD1Q16881 649 aa24.45■■□□□ 1.5
TNFRSF1A-213ENST00000540022 HEG1Q9ULI3 1381 aa24.44■■□□□ 1.5
TNFRSF1A-213ENST00000540022 TWISTNBQ3B726 338 aaPredicted RBP24.44■■□□□ 1.5
TNFRSF1A-213ENST00000540022 VAMP4O75379 141 aa24.43■■□□□ 1.5
TNFRSF1A-213ENST00000540022 ANO8Q9HCE9 1232 aaPredicted RBP24.43■■□□□ 1.5
TNFRSF1A-213ENST00000540022 PAPPAQ13219 1627 aa24.42■■□□□ 1.5
TNFRSF1A-213ENST00000540022 PTCD1O75127 700 aaKnown RBP24.41■■□□□ 1.5
TNFRSF1A-213ENST00000540022 CT47B1P0C2W7 299 aaPredicted RBP24.41■■□□□ 1.5
TNFRSF1A-213ENST00000540022 FMNL2Q96PY5 1086 aa24.41■■□□□ 1.5
TNFRSF1A-213ENST00000540022 KCPQ6ZWJ8 1503 aa24.41■■□□□ 1.5
TNFRSF1A-213ENST00000540022 GIGYF1O75420 1035 aaPredicted RBP24.4■■□□□ 1.5
TNFRSF1A-213ENST00000540022 LY75O60449 1722 aa24.4■■□□□ 1.5
TNFRSF1A-213ENST00000540022 KCNQ4P56696 695 aa24.4■■□□□ 1.5
TNFRSF1A-213ENST00000540022 PALLDQ8WX93 1383 aa24.39■■□□□ 1.49
TNFRSF1A-213ENST00000540022 PRAMEF22A3QJZ6 481 aa24.39■■□□□ 1.49
TNFRSF1A-213ENST00000540022 RCAN3Q9UKA8 241 aa24.39■■□□□ 1.49
TNFRSF1A-213ENST00000540022 CASZ1Q86V15 1759 aa24.38■■□□□ 1.49
TNFRSF1A-213ENST00000540022 SMARCC1Q92922 1105 aaPredicted RBP24.37■■□□□ 1.49
TNFRSF1A-213ENST00000540022 RBM42Q9BTD8 480 aaKnown RBP24.37■■□□□ 1.49
TNFRSF1A-213ENST00000540022 HOXB7P09629 217 aa24.36■■□□□ 1.49
TNFRSF1A-213ENST00000540022 RARSP54136 660 aaKnown RBP24.36■■□□□ 1.49
TNFRSF1A-213ENST00000540022 SLC4A9Q96Q91 983 aa24.36■■□□□ 1.49
TNFRSF1A-213ENST00000540022 SOS1Q07889 1333 aaPredicted RBP24.36■■□□□ 1.49
TNFRSF1A-213ENST00000540022 SNRPA1P09661 255 aaKnown RBP24.35■■□□□ 1.49
TNFRSF1A-213ENST00000540022 UBR2Q8IWV8 1755 aa24.35■■□□□ 1.49
TNFRSF1A-213ENST00000540022 LRRC4BQ9NT99 713 aa24.35■■□□□ 1.49
TNFRSF1A-213ENST00000540022 TCERG1O14776 1098 aaKnown RBP24.34■■□□□ 1.49
TNFRSF1A-213ENST00000540022 ZNF428Q96B54 188 aa24.34■■□□□ 1.49
TNFRSF1A-213ENST00000540022 EIF2S2P20042 333 aaKnown RBP24.33■■□□□ 1.49
TNFRSF1A-213ENST00000540022 VSIG10Q8N0Z9 540 aa24.33■■□□□ 1.49
TNFRSF1A-213ENST00000540022 SSH1Q8WYL5 1049 aa24.33■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms