RNA–Protein interactions for RNA: ENST00000540017.6

SNRPA1-203, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 1 (best)

Gene SNRPA1, Length 506 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-203ENST00000540017 GAS2L2Q8NHY3 880 aa24.43■■□□□ 1.5
SNRPA1-203ENST00000540017 C5P01031 1676 aa24.43■■□□□ 1.5
SNRPA1-203ENST00000540017 TAF1LQ8IZX4 1826 aa24.42■■□□□ 1.5
SNRPA1-203ENST00000540017 SLC52A2Q9HAB3 445 aa24.42■■□□□ 1.5
SNRPA1-203ENST00000540017 MAP3K5Q99683 1374 aa24.42■■□□□ 1.5
SNRPA1-203ENST00000540017 MRC1P22897 1456 aa24.41■■□□□ 1.5
SNRPA1-203ENST00000540017 TUBGCP6Q96RT7 1819 aa24.41■■□□□ 1.5
SNRPA1-203ENST00000540017 SLC4A9Q96Q91 983 aa24.41■■□□□ 1.5
SNRPA1-203ENST00000540017 GNAT3A8MTJ3 354 aa24.4■■□□□ 1.5
SNRPA1-203ENST00000540017 ITPK1Q13572 414 aa24.4■■□□□ 1.5
SNRPA1-203ENST00000540017 IL17REQ8NFR9 667 aa24.4■■□□□ 1.5
SNRPA1-203ENST00000540017 PNPLA7Q6ZV29 1317 aa24.38■■□□□ 1.49
SNRPA1-203ENST00000540017 ZBTB7AO95365 584 aa24.38■■□□□ 1.49
SNRPA1-203ENST00000540017 LINC00116Q8NCU8 138 aa24.38■■□□□ 1.49
SNRPA1-203ENST00000540017 PLEKHF1Q96S99 279 aa24.38■■□□□ 1.49
SNRPA1-203ENST00000540017 TFCP2L1Q9NZI6 479 aa24.38■■□□□ 1.49
SNRPA1-203ENST00000540017 ATP6V1AP38606 617 aa24.37■■□□□ 1.49
SNRPA1-203ENST00000540017 RBM42Q9BTD8 480 aaKnown RBP24.37■■□□□ 1.49
SNRPA1-203ENST00000540017 C4BP0C0L5 1744 aa24.36■■□□□ 1.49
SNRPA1-203ENST00000540017 QSER1Q2KHR3 1735 aa24.36■■□□□ 1.49
SNRPA1-203ENST00000540017 PTCD1O75127 700 aaKnown RBP24.35■■□□□ 1.49
SNRPA1-203ENST00000540017 SLC39A6Q13433 755 aa24.35■■□□□ 1.49
SNRPA1-203ENST00000540017 AMIGO3Q86WK7 504 aa24.35■■□□□ 1.49
SNRPA1-203ENST00000540017 SPON1Q9HCB6 807 aa24.35■■□□□ 1.49
SNRPA1-203ENST00000540017 SMIM5Q71RC9 77 aa24.34■■□□□ 1.49
SNRPA1-203ENST00000540017 ATF5Q9Y2D1 282 aaPredicted RBP24.34■■□□□ 1.49
SNRPA1-203ENST00000540017 CEMIPQ8WUJ3 1361 aa24.33■■□□□ 1.49
SNRPA1-203ENST00000540017 ZNF831Q5JPB2 1677 aa24.33■■□□□ 1.49
SNRPA1-203ENST00000540017 COL23A1Q86Y22 540 aaPredicted RBP24.32■■□□□ 1.48
SNRPA1-203ENST00000540017 SIPA1L3O60292 1781 aaPredicted RBP24.31■■□□□ 1.48
SNRPA1-203ENST00000540017 PTGER2P43116 358 aa24.3■■□□□ 1.48
SNRPA1-203ENST00000540017 TEFQ10587 303 aa24.3■■□□□ 1.48
SNRPA1-203ENST00000540017 DCTN1Q14203 1278 aa24.3■■□□□ 1.48
SNRPA1-203ENST00000540017 MCM10Q7L590 875 aa24.3■■□□□ 1.48
SNRPA1-203ENST00000540017 AK7Q96M32 723 aa24.3■■□□□ 1.48
SNRPA1-203ENST00000540017 MTFR1LQ9H019 292 aa24.3■■□□□ 1.48
SNRPA1-203ENST00000540017 UBR3Q6ZT12 1888 aa24.29■■□□□ 1.48
SNRPA1-203ENST00000540017 COL5A3P25940 1745 aaPredicted RBP24.29■■□□□ 1.48
SNRPA1-203ENST00000540017 KCPQ6ZWJ8 1503 aa24.29■■□□□ 1.48
SNRPA1-203ENST00000540017 HMGB2P26583 209 aaKnown RBP24.28■■□□□ 1.48
SNRPA1-203ENST00000540017 DLG5Q8TDM6 1919 aa24.27■■□□□ 1.48
SNRPA1-203ENST00000540017 TJP1Q07157 1748 aa24.27■■□□□ 1.48
SNRPA1-203ENST00000540017 NFE2L2Q16236 605 aa24.27■■□□□ 1.48
SNRPA1-203ENST00000540017 CCDC184Q52MB2 194 aa24.27■■□□□ 1.48
SNRPA1-203ENST00000540017 SGIP1Q9BQI5 828 aa24.27■■□□□ 1.48
SNRPA1-203ENST00000540017 HTATSF1O43719 755 aaKnown RBP24.26■■□□□ 1.47
SNRPA1-203ENST00000540017 NEFMP07197 916 aa24.26■■□□□ 1.47
SNRPA1-203ENST00000540017 SLC16A10Q8TF71 515 aa24.26■■□□□ 1.47
SNRPA1-203ENST00000540017 RTF1Q92541 710 aaKnown RBP24.26■■□□□ 1.47
SNRPA1-203ENST00000540017 PNNQ9H307 717 aaKnown RBP24.26■■□□□ 1.47
SNRPA1-203ENST00000540017 ADAMTS8Q9UP79 889 aa24.26■■□□□ 1.47
SNRPA1-203ENST00000540017 UBR2Q8IWV8 1755 aa24.25■■□□□ 1.47
SNRPA1-203ENST00000540017 GNPATO15228 680 aa24.25■■□□□ 1.47
SNRPA1-203ENST00000540017 MSH5O43196 834 aa24.25■■□□□ 1.47
SNRPA1-203ENST00000540017 PHF14O94880 888 aa24.25■■□□□ 1.47
SNRPA1-203ENST00000540017 CCDC146Q8IYE0 955 aa24.25■■□□□ 1.47
SNRPA1-203ENST00000540017 MAPK8IP3Q9UPT6 1336 aa24.25■■□□□ 1.47
SNRPA1-203ENST00000540017 CICQ96RK0 1608 aaPredicted RBP24.24■■□□□ 1.47
SNRPA1-203ENST00000540017 MYH14Q7Z406 1995 aaKnown RBP24.24■■□□□ 1.47
SNRPA1-203ENST00000540017 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.24■■□□□ 1.47
SNRPA1-203ENST00000540017 WDR43Q15061 677 aaKnown RBP eCLIP24.24■■□□□ 1.47
SNRPA1-203ENST00000540017 KCNQ3O43525 872 aa24.23■■□□□ 1.47
SNRPA1-203ENST00000540017 RC3H1Q5TC82 1133 aaKnown RBP24.23■■□□□ 1.47
SNRPA1-203ENST00000540017 ZNF790Q6PG37 636 aa24.23■■□□□ 1.47
SNRPA1-203ENST00000540017 DNAJC10Q8IXB1 793 aa24.23■■□□□ 1.47
SNRPA1-203ENST00000540017 CNTNAP4Q9C0A0 1308 aa24.23■■□□□ 1.47
SNRPA1-203ENST00000540017 SSFA2P28290 1259 aa24.22■■□□□ 1.47
SNRPA1-203ENST00000540017 CRKLP46109 303 aaKnown RBP24.22■■□□□ 1.47
SNRPA1-203ENST00000540017 FLAD1Q8NFF5 587 aa24.22■■□□□ 1.47
SNRPA1-203ENST00000540017 ZNF496Q96IT1 587 aaPredicted RBP24.22■■□□□ 1.47
SNRPA1-203ENST00000540017 COL24A1Q17RW2 1714 aa24.21■■□□□ 1.47
SNRPA1-203ENST00000540017 BTBD11A6QL63 1104 aa24.21■■□□□ 1.47
SNRPA1-203ENST00000540017 TTC5Q8N0Z6 440 aa24.21■■□□□ 1.47
SNRPA1-203ENST00000540017 THUMPD2Q9BTF0 503 aaKnown RBP24.21■■□□□ 1.47
SNRPA1-203ENST00000540017 PPP1R1BQ9UD71 204 aaPredicted RBP24.21■■□□□ 1.47
SNRPA1-203ENST00000540017 ANP32CO43423 234 aa24.2■■□□□ 1.46
SNRPA1-203ENST00000540017 MSL1Q68DK7 614 aa24.2■■□□□ 1.46
SNRPA1-203ENST00000540017 TMPOP42166 694 aaKnown RBP24.19■■□□□ 1.46
SNRPA1-203ENST00000540017 INTS5Q6P9B9 1019 aaKnown RBP24.19■■□□□ 1.46
SNRPA1-203ENST00000540017 RPS6KA4O75676 772 aa24.18■■□□□ 1.46
SNRPA1-203ENST00000540017 CYP19A1P11511 503 aaPredicted RBP24.18■■□□□ 1.46
SNRPA1-203ENST00000540017 RIPK4P57078 832 aa24.18■■□□□ 1.46
SNRPA1-203ENST00000540017 VSIG10Q8N0Z9 540 aa24.18■■□□□ 1.46
SNRPA1-203ENST00000540017 RUNDC1Q96C34 613 aa24.18■■□□□ 1.46
SNRPA1-203ENST00000540017 RRP7AQ9Y3A4 280 aaKnown RBP24.18■■□□□ 1.46
SNRPA1-203ENST00000540017 RTCBQ9Y3I0 505 aaKnown RBP24.18■■□□□ 1.46
SNRPA1-203ENST00000540017 HEG1Q9ULI3 1381 aa24.17■■□□□ 1.46
SNRPA1-203ENST00000540017 MIS18AQ9NYP9 233 aa24.17■■□□□ 1.46
SNRPA1-203ENST00000540017 TAF7Q15545 349 aaPredicted RBP24.16■■□□□ 1.46
SNRPA1-203ENST00000540017 ARHGEF1Q92888 912 aaKnown RBP24.16■■□□□ 1.46
SNRPA1-203ENST00000540017 ARXQ96QS3 562 aa24.15■■□□□ 1.46
SNRPA1-203ENST00000540017 CCDC87Q9NVE4 849 aa24.15■■□□□ 1.46
SNRPA1-203ENST00000540017 NEUROD2Q15784 382 aa24.14■■□□□ 1.45
SNRPA1-203ENST00000540017 TRAPPC3LQ5T215 181 aa24.14■■□□□ 1.45
SNRPA1-203ENST00000540017 FMNL2Q96PY5 1086 aa24.14■■□□□ 1.45
SNRPA1-203ENST00000540017 POLD1P28340 1107 aa24.12■■□□□ 1.45
SNRPA1-203ENST00000540017 FHDC1Q9C0D6 1143 aaPredicted RBP24.12■■□□□ 1.45
SNRPA1-203ENST00000540017 ZBTB1Q9Y2K1 713 aa24.12■■□□□ 1.45
SNRPA1-203ENST00000540017 PRAMEF22A3QJZ6 481 aa24.11■■□□□ 1.45
SNRPA1-203ENST00000540017 ADRA2BP18089 450 aa24.11■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 118.8 ms