RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 KCPQ6ZWJ8 1503 aa17.18■□□□□ 0.34
CCDC42-202ENST00000539522 SLC52A2Q9HAB3 445 aa17.18■□□□□ 0.34
CCDC42-202ENST00000539522 SOCS7O14512 581 aa17.17■□□□□ 0.34
CCDC42-202ENST00000539522 HTATSF1O43719 755 aaKnown RBP17.17■□□□□ 0.34
CCDC42-202ENST00000539522 NEUROD2Q15784 382 aa17.17■□□□□ 0.34
CCDC42-202ENST00000539522 SYTL4Q96C24 671 aaPredicted RBP17.17■□□□□ 0.34
CCDC42-202ENST00000539522 CAMKK2Q96RR4 588 aa17.17■□□□□ 0.34
CCDC42-202ENST00000539522 ATG3Q9NT62 314 aa17.17■□□□□ 0.34
CCDC42-202ENST00000539522 ASAP1Q9ULH1 1129 aa17.17■□□□□ 0.34
CCDC42-202ENST00000539522 TAF1LQ8IZX4 1826 aa17.17■□□□□ 0.34
CCDC42-202ENST00000539522 TJP1Q07157 1748 aa17.16■□□□□ 0.34
CCDC42-202ENST00000539522 SLC4A9Q96Q91 983 aa17.16■□□□□ 0.34
CCDC42-202ENST00000539522 CICQ96RK0 1608 aaPredicted RBP17.16■□□□□ 0.34
CCDC42-202ENST00000539522 ZNF831Q5JPB2 1677 aa17.16■□□□□ 0.34
CCDC42-202ENST00000539522 APBA3O96018 575 aa17.15■□□□□ 0.34
CCDC42-202ENST00000539522 EN1Q05925 392 aaPredicted RBP17.15■□□□□ 0.34
CCDC42-202ENST00000539522 COL5A3P25940 1745 aaPredicted RBP17.14■□□□□ 0.33
CCDC42-202ENST00000539522 PLSCR1O15162 318 aa17.14■□□□□ 0.33
CCDC42-202ENST00000539522 KCNQ3O43525 872 aa17.14■□□□□ 0.33
CCDC42-202ENST00000539522 CABP4P57796 275 aa17.14■□□□□ 0.33
CCDC42-202ENST00000539522 EZH2Q15910 746 aaKnown RBP17.14■□□□□ 0.33
CCDC42-202ENST00000539522 CCDC125Q86Z20 511 aa17.14■□□□□ 0.33
CCDC42-202ENST00000539522 TMOD3Q9NYL9 352 aa17.14■□□□□ 0.33
CCDC42-202ENST00000539522 SLC39A6Q13433 755 aa17.13■□□□□ 0.33
CCDC42-202ENST00000539522 LRRC4BQ9NT99 713 aa17.13■□□□□ 0.33
CCDC42-202ENST00000539522 ZNF521Q96K83 1311 aa17.13■□□□□ 0.33
CCDC42-202ENST00000539522 C5P01031 1676 aa17.13■□□□□ 0.33
CCDC42-202ENST00000539522 PALLDQ8WX93 1383 aa17.13■□□□□ 0.33
CCDC42-202ENST00000539522 KCNQ4P56696 695 aa17.12■□□□□ 0.33
CCDC42-202ENST00000539522 MIS18AQ9NYP9 233 aa17.12■□□□□ 0.33
CCDC42-202ENST00000539522 NEFMP07197 916 aa17.11■□□□□ 0.33
CCDC42-202ENST00000539522 CCDC27Q2M243 656 aa17.11■□□□□ 0.33
CCDC42-202ENST00000539522 TUBGCP6Q96RT7 1819 aa17.11■□□□□ 0.33
CCDC42-202ENST00000539522 NCBP3Q53F19 620 aaKnown RBP17.1■□□□□ 0.33
CCDC42-202ENST00000539522 WWC1Q8IX03 1113 aa17.1■□□□□ 0.33
CCDC42-202ENST00000539522 RTF1Q92541 710 aaKnown RBP17.1■□□□□ 0.33
CCDC42-202ENST00000539522 ZNF853P0CG23 659 aa17.09■□□□□ 0.33
CCDC42-202ENST00000539522 TXNRD1Q16881 649 aa17.09■□□□□ 0.33
CCDC42-202ENST00000539522 SPINK5Q9NQ38 1064 aaPredicted RBP17.09■□□□□ 0.33
CCDC42-202ENST00000539522 SALL2Q9Y467 1007 aaPredicted RBP17.09■□□□□ 0.33
CCDC42-202ENST00000539522 TEFQ10587 303 aa17.08■□□□□ 0.32
CCDC42-202ENST00000539522 ITPK1Q13572 414 aa17.08■□□□□ 0.32
CCDC42-202ENST00000539522 TAF7Q15545 349 aaPredicted RBP17.08■□□□□ 0.32
CCDC42-202ENST00000539522 MYH14Q7Z406 1995 aaKnown RBP17.08■□□□□ 0.32
CCDC42-202ENST00000539522 HEG1Q9ULI3 1381 aa17.07■□□□□ 0.32
CCDC42-202ENST00000539522 BAG6P46379 1132 aa17.07■□□□□ 0.32
CCDC42-202ENST00000539522 ZNF790Q6PG37 636 aa17.07■□□□□ 0.32
CCDC42-202ENST00000539522 C4BP0C0L5 1744 aa17.07■□□□□ 0.32
CCDC42-202ENST00000539522 BTBD11A6QL63 1104 aa17.06■□□□□ 0.32
CCDC42-202ENST00000539522 CHL1O00533 1208 aa17.06■□□□□ 0.32
CCDC42-202ENST00000539522 LMOD3Q0VAK6 560 aa17.06■□□□□ 0.32
CCDC42-202ENST00000539522 ZNF496Q96IT1 587 aaPredicted RBP17.06■□□□□ 0.32
CCDC42-202ENST00000539522 LOC102724428A0A0B4J2F2 783 aa17.05■□□□□ 0.32
CCDC42-202ENST00000539522 PRAMEF22A3QJZ6 481 aa17.05■□□□□ 0.32
CCDC42-202ENST00000539522 SIK1P57059 783 aa17.05■□□□□ 0.32
CCDC42-202ENST00000539522 SF3B2Q13435 895 aaKnown RBP17.05■□□□□ 0.32
CCDC42-202ENST00000539522 ANO8Q9HCE9 1232 aaPredicted RBP17.05■□□□□ 0.32
CCDC42-202ENST00000539522 LAMB4A4D0S4 1761 aa17.05■□□□□ 0.32
CCDC42-202ENST00000539522 PTCD1O75127 700 aaKnown RBP17.04■□□□□ 0.32
CCDC42-202ENST00000539522 AMIGO3Q86WK7 504 aa17.04■□□□□ 0.32
CCDC42-202ENST00000539522 LINC00116Q8NCU8 138 aa17.04■□□□□ 0.32
CCDC42-202ENST00000539522 SMARCC1Q92922 1105 aaPredicted RBP17.04■□□□□ 0.32
CCDC42-202ENST00000539522 UBR3Q6ZT12 1888 aa17.03■□□□□ 0.32
CCDC42-202ENST00000539522 EIF4A1P60842 406 aaKnown RBP17.03■□□□□ 0.32
CCDC42-202ENST00000539522 KRT24Q2M2I5 525 aa17.03■□□□□ 0.32
CCDC42-202ENST00000539522 MBIPQ9NS73 344 aa17.03■□□□□ 0.32
CCDC42-202ENST00000539522 CCNL1Q9UK58 526 aaPredicted RBP17.03■□□□□ 0.32
CCDC42-202ENST00000539522 QSER1Q2KHR3 1735 aa17.02■□□□□ 0.32
CCDC42-202ENST00000539522 ZNF827Q17R98 1081 aa17.02■□□□□ 0.32
CCDC42-202ENST00000539522 CFAP44Q96MT7 982 aa17.02■□□□□ 0.32
CCDC42-202ENST00000539522 SLC27A3Q5K4L6 730 aa17.01■□□□□ 0.31
CCDC42-202ENST00000539522 DNAJC10Q8IXB1 793 aa17.01■□□□□ 0.31
CCDC42-202ENST00000539522 AKT1S1Q96B36 256 aa17.01■□□□□ 0.31
CCDC42-202ENST00000539522 RBM42Q9BTD8 480 aaKnown RBP17.01■□□□□ 0.31
CCDC42-202ENST00000539522 IFT57Q9NWB7 429 aa17.01■□□□□ 0.31
CCDC42-202ENST00000539522 ATP6V1AP38606 617 aa17■□□□□ 0.31
CCDC42-202ENST00000539522 SMIM5Q71RC9 77 aa17■□□□□ 0.31
CCDC42-202ENST00000539522 WDR63Q8IWG1 891 aa17■□□□□ 0.31
CCDC42-202ENST00000539522 TSR2Q969E8 191 aaKnown RBP17■□□□□ 0.31
CCDC42-202ENST00000539522 BABAM1Q9NWV8 329 aa17■□□□□ 0.31
CCDC42-202ENST00000539522 TSPYL4Q9UJ04 414 aa17■□□□□ 0.31
CCDC42-202ENST00000539522 CASZ1Q86V15 1759 aa17■□□□□ 0.31
CCDC42-202ENST00000539522 IL16Q14005 1332 aa16.99■□□□□ 0.31
CCDC42-202ENST00000539522 CDCA7LQ96GN5 454 aa16.99■□□□□ 0.31
CCDC42-202ENST00000539522 YTHDC1Q96MU7 727 aaKnown RBP16.99■□□□□ 0.31
CCDC42-202ENST00000539522 LAS1LQ9Y4W2 734 aaKnown RBP16.99■□□□□ 0.31
CCDC42-202ENST00000539522 CYP19A1P11511 503 aaPredicted RBP16.98■□□□□ 0.31
CCDC42-202ENST00000539522 VSIG10Q8N0Z9 540 aa16.98■□□□□ 0.31
CCDC42-202ENST00000539522 NGEFQ8N5V2 710 aa16.98■□□□□ 0.31
CCDC42-202ENST00000539522 USP16Q9Y5T5 823 aa16.98■□□□□ 0.31
CCDC42-202ENST00000539522 C4AP0C0L4 1744 aa16.98■□□□□ 0.31
CCDC42-202ENST00000539522 GIGYF1O75420 1035 aaPredicted RBP16.97■□□□□ 0.31
CCDC42-202ENST00000539522 INTS5Q6P9B9 1019 aaKnown RBP16.97■□□□□ 0.31
CCDC42-202ENST00000539522 TTC5Q8N0Z6 440 aa16.97■□□□□ 0.31
CCDC42-202ENST00000539522 FMNL2Q96PY5 1086 aa16.97■□□□□ 0.31
CCDC42-202ENST00000539522 FANCIQ9NVI1 1328 aa16.96■□□□□ 0.31
CCDC42-202ENST00000539522 GNAI1P63096 354 aa16.96■□□□□ 0.31
CCDC42-202ENST00000539522 HNRNPUQ00839 825 aaKnown RBP eCLIP16.96■□□□□ 0.31
CCDC42-202ENST00000539522 TRMT2AQ8IZ69 625 aaKnown RBP16.96■□□□□ 0.31
CCDC42-202ENST00000539522 C8orf58Q8NAV2 365 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms