RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 CDC45O75419 566 aa8.24□□□□□ -1.09
USP28-206ENST00000538224 GCP02774 474 aa8.24□□□□□ -1.09
USP28-206ENST00000538224 GNAI2P04899 355 aa8.24□□□□□ -1.09
USP28-206ENST00000538224 ATF3P18847 181 aa8.24□□□□□ -1.09
USP28-206ENST00000538224 RBM25P49756 843 aaKnown RBP8.24□□□□□ -1.09
USP28-206ENST00000538224 MFAP1P55081 439 aaKnown RBP8.24□□□□□ -1.09
USP28-206ENST00000538224 TEFQ10587 303 aa8.24□□□□□ -1.09
USP28-206ENST00000538224 FLIIQ13045 1269 aa8.24□□□□□ -1.09
USP28-206ENST00000538224 KRT24Q2M2I5 525 aa8.24□□□□□ -1.09
USP28-206ENST00000538224 C1orf141Q5JVX7 400 aa8.24□□□□□ -1.09
USP28-206ENST00000538224 KRT28Q7Z3Y7 464 aa8.24□□□□□ -1.09
USP28-206ENST00000538224 SIRT2Q8IXJ6 389 aa8.24□□□□□ -1.09
USP28-206ENST00000538224 NPHP3Q7Z494 1330 aa8.24□□□□□ -1.09
USP28-206ENST00000538224 FKBP5Q13451 457 aaPredicted RBP8.23□□□□□ -1.09
USP28-206ENST00000538224 HDGFL1Q5TGJ6 251 aa8.23□□□□□ -1.09
USP28-206ENST00000538224 NBPF6Q5VWK0 638 aa8.23□□□□□ -1.09
USP28-206ENST00000538224 ZNF530Q6P9A1 599 aaPredicted RBP8.23□□□□□ -1.09
USP28-206ENST00000538224 CADPS2Q86UW7 1296 aa8.23□□□□□ -1.09
USP28-206ENST00000538224 HSCBQ8IWL3 235 aa8.23□□□□□ -1.09
USP28-206ENST00000538224 IL17REQ8NFR9 667 aa8.23□□□□□ -1.09
USP28-206ENST00000538224 NBPF4Q96M43 638 aa8.23□□□□□ -1.09
USP28-206ENST00000538224 HDAC5Q9UQL6 1122 aa8.23□□□□□ -1.09
USP28-206ENST00000538224 ABCA3Q99758 1704 aa8.23□□□□□ -1.09
USP28-206ENST00000538224 MRC1P22897 1456 aa8.22□□□□□ -1.09
USP28-206ENST00000538224 PXDNQ92626 1479 aa8.22□□□□□ -1.09
USP28-206ENST00000538224 TTC22Q5TAA0 569 aa8.22□□□□□ -1.09
USP28-206ENST00000538224 ANKRD24Q8TF21 1146 aa8.22□□□□□ -1.09
USP28-206ENST00000538224 ORAI2Q96SN7 254 aa8.22□□□□□ -1.09
USP28-206ENST00000538224 MEIS3Q99687 375 aa8.22□□□□□ -1.09
USP28-206ENST00000538224 TMEM94Q12767 1356 aa8.22□□□□□ -1.09
USP28-206ENST00000538224 IBTKQ9P2D0 1353 aaPredicted RBP8.22□□□□□ -1.09
USP28-206ENST00000538224 DEKP35659 375 aaKnown RBP8.21□□□□□ -1.1
USP28-206ENST00000538224 NFKBIBQ15653 356 aa8.21□□□□□ -1.1
USP28-206ENST00000538224 SLC4A10Q6U841 1118 aa8.21□□□□□ -1.1
USP28-206ENST00000538224 USHBP1Q8N6Y0 703 aa8.21□□□□□ -1.1
USP28-206ENST00000538224 SNX21Q969T3 373 aa8.21□□□□□ -1.1
USP28-206ENST00000538224 MIS18AQ9NYP9 233 aa8.21□□□□□ -1.1
USP28-206ENST00000538224 ERBB3P21860 1342 aa8.21□□□□□ -1.1
USP28-206ENST00000538224 C5P01031 1676 aa8.21□□□□□ -1.1
USP28-206ENST00000538224 ZBTB7CA1YPR0 619 aa8.2□□□□□ -1.1
USP28-206ENST00000538224 RNMTO43148 476 aaKnown RBP8.2□□□□□ -1.1
USP28-206ENST00000538224 SLC4A3P48751 1232 aa8.2□□□□□ -1.1
USP28-206ENST00000538224 EIF4A1P60842 406 aaKnown RBP8.2□□□□□ -1.1
USP28-206ENST00000538224 TBC1D9Q6ZT07 1266 aa8.2□□□□□ -1.1
USP28-206ENST00000538224 G2E3Q7L622 706 aa8.2□□□□□ -1.1
USP28-206ENST00000538224 PLEKHM2Q8IWE5 1019 aa8.2□□□□□ -1.1
USP28-206ENST00000538224 TBC1D2Q9BYX2 928 aa8.2□□□□□ -1.1
USP28-206ENST00000538224 SRCIN1Q9C0H9 1055 aa8.2□□□□□ -1.1
USP28-206ENST00000538224 OSBPL3Q9H4L5 887 aa8.2□□□□□ -1.1
USP28-206ENST00000538224 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.2□□□□□ -1.12e-6■■■■□ 24.3
USP28-206ENST00000538224 AOX1Q06278 1338 aa8.2□□□□□ -1.1
USP28-206ENST00000538224 CPDO75976 1380 aa8.2□□□□□ -1.1
USP28-206ENST00000538224 STRCQ7RTU9 1775 aa8.2□□□□□ -1.1
USP28-206ENST00000538224 NHSL1Q5SYE7 1610 aa8.19□□□□□ -1.1
USP28-206ENST00000538224 BTBD11A6QL63 1104 aa8.19□□□□□ -1.1
USP28-206ENST00000538224 UBTFL1P0CB47 393 aaPredicted RBP8.19□□□□□ -1.1
USP28-206ENST00000538224 LMOD2Q6P5Q4 547 aa8.19□□□□□ -1.1
USP28-206ENST00000538224 IL27Q8NEV9 243 aa8.19□□□□□ -1.1
USP28-206ENST00000538224 RAPGEF4Q8WZA2 1011 aa8.19□□□□□ -1.1
USP28-206ENST00000538224 RBM33Q96EV2 1170 aaKnown RBP8.19□□□□□ -1.1
USP28-206ENST00000538224 LRRCC1Q9C099 1032 aa8.19□□□□□ -1.1
USP28-206ENST00000538224 DBF4Q9UBU7 674 aaPredicted RBP8.19□□□□□ -1.1
USP28-206ENST00000538224 AFDNP55196 1824 aaKnown RBP8.19□□□□□ -1.1
USP28-206ENST00000538224 HEG1Q9ULI3 1381 aa8.19□□□□□ -1.1
USP28-206ENST00000538224 F6X3S4 739 aa8.18□□□□□ -1.1
USP28-206ENST00000538224 RAB11FIP3O75154 756 aa8.18□□□□□ -1.1
USP28-206ENST00000538224 REC8O95072 547 aa8.18□□□□□ -1.1
USP28-206ENST00000538224 HSP90AB1P08238 724 aaKnown RBP8.18□□□□□ -1.1
USP28-206ENST00000538224 TATP17735 454 aaPredicted RBP8.18□□□□□ -1.1
USP28-206ENST00000538224 ATP8B2P98198 1209 aa8.18□□□□□ -1.1
USP28-206ENST00000538224 HSP90AB4PQ58FF6 505 aa8.18□□□□□ -1.1
USP28-206ENST00000538224 LRRC59Q96AG4 307 aaKnown RBP8.18□□□□□ -1.1
USP28-206ENST00000538224 CHMP5Q9NZZ3 219 aa8.18□□□□□ -1.1
USP28-206ENST00000538224 CIZ1Q9ULV3 898 aaPredicted RBP8.18□□□□□ -1.1
USP28-206ENST00000538224 SPG7Q9UQ90 795 aa8.18□□□□□ -1.1
USP28-206ENST00000538224 PAPPAQ13219 1627 aa8.18□□□□□ -1.1
USP28-206ENST00000538224 UBR2Q8IWV8 1755 aa8.17□□□□□ -1.1
USP28-206ENST00000538224 ALDH1L1O75891 902 aa8.17□□□□□ -1.1
USP28-206ENST00000538224 DDX58O95786 925 aaKnown RBP8.17□□□□□ -1.1
USP28-206ENST00000538224 GSPT1P15170 499 aaKnown RBP8.17□□□□□ -1.1
USP28-206ENST00000538224 PTMSP20962 102 aa8.17□□□□□ -1.1
USP28-206ENST00000538224 XPCQ01831 940 aaPredicted RBP8.17□□□□□ -1.1
USP28-206ENST00000538224 RABEP1Q15276 862 aa8.17□□□□□ -1.1
USP28-206ENST00000538224 DNAAF4Q8WXU2 420 aa8.17□□□□□ -1.1
USP28-206ENST00000538224 ANTXR1Q9H6X2 564 aa8.17□□□□□ -1.1
USP28-206ENST00000538224 HYPKQ9NX55 129 aa8.17□□□□□ -1.1
USP28-206ENST00000538224 ARFGEF2Q9Y6D5 1785 aa8.17□□□□□ -1.1
USP28-206ENST00000538224 EPB41L2O43491 1005 aaKnown RBP8.16□□□□□ -1.1
USP28-206ENST00000538224 MEGF6O75095 1541 aa8.16□□□□□ -1.1
USP28-206ENST00000538224 SPATA31A3Q5VYP0 1347 aa8.16□□□□□ -1.1
USP28-206ENST00000538224 SSH3Q8TE77 659 aa8.16□□□□□ -1.1
USP28-206ENST00000538224 LGR6Q9HBX8 967 aa8.16□□□□□ -1.1
USP28-206ENST00000538224 CHPF2Q9P2E5 772 aa8.16□□□□□ -1.1
USP28-206ENST00000538224 KDM6AO15550 1401 aaPredicted RBP8.15□□□□□ -1.1
USP28-206ENST00000538224 SALL3Q9BXA9 1300 aa8.15□□□□□ -1.1
USP28-206ENST00000538224 ERC2O15083 957 aa8.15□□□□□ -1.1
USP28-206ENST00000538224 EIF2S2P20042 333 aaKnown RBP8.15□□□□□ -1.1
USP28-206ENST00000538224 MX1P20591 662 aa8.15□□□□□ -1.1
USP28-206ENST00000538224 MCCP23508 829 aa8.15□□□□□ -1.1
USP28-206ENST00000538224 PDE1AP54750 535 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms