RNA–Protein interactions for RNA: ENST00000537380.1

CIITA-203, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best)

Gene CIITA, Length 1,062 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-203ENST00000537380 TRIM37O94972 964 aa12.18□□□□□ -0.46
CIITA-203ENST00000537380 APBA3O96018 575 aa12.18□□□□□ -0.46
CIITA-203ENST00000537380 NEFLP07196 543 aa12.18□□□□□ -0.46
CIITA-203ENST00000537380 HSP90AB1P08238 724 aaKnown RBP12.18□□□□□ -0.46
CIITA-203ENST00000537380 EN1Q05925 392 aaPredicted RBP12.18□□□□□ -0.46
CIITA-203ENST00000537380 C1orf141Q5JVX7 400 aa12.18□□□□□ -0.46
CIITA-203ENST00000537380 BRPF1P55201 1214 aaPredicted RBP12.17□□□□□ -0.46
CIITA-203ENST00000537380 NBPF14Q5TI25 921 aa12.17□□□□□ -0.46
CIITA-203ENST00000537380 ZNF530Q6P9A1 599 aaPredicted RBP12.17□□□□□ -0.46
CIITA-203ENST00000537380 DOT1LQ8TEK3 1739 aa12.17□□□□□ -0.46
CIITA-203ENST00000537380 TAF7Q15545 349 aaPredicted RBP12.16□□□□□ -0.46
CIITA-203ENST00000537380 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.16□□□□□ -0.46
CIITA-203ENST00000537380 IL17REQ8NFR9 667 aa12.16□□□□□ -0.46
CIITA-203ENST00000537380 CHMP4AQ9BY43 222 aa12.16□□□□□ -0.46
CIITA-203ENST00000537380 NUP188Q5SRE5 1749 aa12.16□□□□□ -0.46
CIITA-203ENST00000537380 BTAF1O14981 1849 aa12.16□□□□□ -0.46
CIITA-203ENST00000537380 PSDA5PKW4 1024 aaPredicted RBP12.15□□□□□ -0.46
CIITA-203ENST00000537380 NKX1-1Q15270 411 aaPredicted RBP12.15□□□□□ -0.46
CIITA-203ENST00000537380 ALDH1L2Q3SY69 923 aa12.15□□□□□ -0.46
CIITA-203ENST00000537380 IFNL2Q8IZJ0 200 aa12.15□□□□□ -0.46
CIITA-203ENST00000537380 ZCRB1Q8TBF4 217 aaKnown RBP12.15□□□□□ -0.46
CIITA-203ENST00000537380 BCL11BQ9C0K0 894 aaPredicted RBP12.15□□□□□ -0.46
CIITA-203ENST00000537380 MBIPQ9NS73 344 aa12.15□□□□□ -0.46
CIITA-203ENST00000537380 PCDH11XQ9BZA7 1347 aa12.14□□□□□ -0.47
CIITA-203ENST00000537380 PCDH11YQ9BZA8 1340 aa12.14□□□□□ -0.47
CIITA-203ENST00000537380 RNMTO43148 476 aaKnown RBP12.14□□□□□ -0.47
CIITA-203ENST00000537380 PHKG2P15735 406 aa12.14□□□□□ -0.47
CIITA-203ENST00000537380 RARSP54136 660 aaKnown RBP12.14□□□□□ -0.47
CIITA-203ENST00000537380 RRP1P56182 461 aaKnown RBP12.14□□□□□ -0.47
CIITA-203ENST00000537380 MCM10Q7L590 875 aa12.14□□□□□ -0.47
CIITA-203ENST00000537380 DCAF5Q96JK2 942 aa12.14□□□□□ -0.47
CIITA-203ENST00000537380 CAMKK2Q96RR4 588 aa12.14□□□□□ -0.47
CIITA-203ENST00000537380 GTF3C3Q9Y5Q9 886 aa12.14□□□□□ -0.47
CIITA-203ENST00000537380 TOGARAM1Q9Y4F4 1720 aa12.14□□□□□ -0.47
CIITA-203ENST00000537380 EXOSC9Q06265 439 aaKnown RBP12.13□□□□□ -0.47
CIITA-203ENST00000537380 DCTN1Q14203 1278 aa12.13□□□□□ -0.47
CIITA-203ENST00000537380 EZH2Q15910 746 aaKnown RBP12.13□□□□□ -0.47
CIITA-203ENST00000537380 PTF1AQ7RTS3 328 aa12.13□□□□□ -0.47
CIITA-203ENST00000537380 THUMPD2Q9BTF0 503 aaKnown RBP12.13□□□□□ -0.47
CIITA-203ENST00000537380 MRC1P22897 1456 aa12.13□□□□□ -0.47
CIITA-203ENST00000537380 SCN11AQ9UI33 1791 aa12.13□□□□□ -0.47
CIITA-203ENST00000537380 PLSCR1O15162 318 aa12.12□□□□□ -0.47
CIITA-203ENST00000537380 VAMP4O75379 141 aa12.12□□□□□ -0.47
CIITA-203ENST00000537380 HOXB7P09629 217 aa12.12□□□□□ -0.47
CIITA-203ENST00000537380 R3HDM1Q15032 1099 aaKnown RBP12.12□□□□□ -0.47
CIITA-203ENST00000537380 DDX54Q8TDD1 881 aaKnown RBP12.12□□□□□ -0.47
CIITA-203ENST00000537380 TSR2Q969E8 191 aaKnown RBP12.12□□□□□ -0.47
CIITA-203ENST00000537380 KAT6BQ8WYB5 2073 aa12.11□□□□□ -0.47
CIITA-203ENST00000537380 SIPA1L3O60292 1781 aaPredicted RBP12.11□□□□□ -0.47
CIITA-203ENST00000537380 ERVV-2B6SEH9 535 aa12.11□□□□□ -0.47
CIITA-203ENST00000537380 CYP27B1O15528 508 aa12.11□□□□□ -0.47
CIITA-203ENST00000537380 KCNQ2O43526 872 aa12.11□□□□□ -0.47
CIITA-203ENST00000537380 TEFQ10587 303 aa12.11□□□□□ -0.47
CIITA-203ENST00000537380 PDE3AQ14432 1141 aa12.11□□□□□ -0.47
CIITA-203ENST00000537380 ITGB4P16144 1822 aa12.11□□□□□ -0.47
CIITA-203ENST00000537380 VIRMAQ69YN4 1812 aaKnown RBP12.1□□□□□ -0.47
CIITA-203ENST00000537380 DCAF8L1A6NGE4 600 aa12.1□□□□□ -0.47
CIITA-203ENST00000537380 MS4A1P11836 297 aa12.1□□□□□ -0.47
CIITA-203ENST00000537380 TSPYL4Q9UJ04 414 aa12.1□□□□□ -0.47
CIITA-203ENST00000537380 LY75O60449 1722 aa12.1□□□□□ -0.47
CIITA-203ENST00000537380 SRCAPQ6ZRS2 3230 aa12.1□□□□□ -0.47
CIITA-203ENST00000537380 KIF16BQ96L93 1317 aa12.1□□□□□ -0.47
CIITA-203ENST00000537380 PAPPAQ13219 1627 aa12.09□□□□□ -0.47
CIITA-203ENST00000537380 AAMPQ13685 434 aa12.09□□□□□ -0.47
CIITA-203ENST00000537380 TWISTNBQ3B726 338 aaPredicted RBP12.09□□□□□ -0.47
CIITA-203ENST00000537380 ARHGAP45Q92619 1136 aa12.09□□□□□ -0.47
CIITA-203ENST00000537380 ACSBG1Q96GR2 724 aa12.09□□□□□ -0.47
CIITA-203ENST00000537380 LGR6Q9HBX8 967 aa12.09□□□□□ -0.47
CIITA-203ENST00000537380 LAS1LQ9Y4W2 734 aaKnown RBP12.09□□□□□ -0.47
CIITA-203ENST00000537380 KDM3BQ7LBC6 1761 aa12.09□□□□□ -0.47
CIITA-203ENST00000537380 KDM6AO15550 1401 aaPredicted RBP12.09□□□□□ -0.47
CIITA-203ENST00000537380 CACNA1FO60840 1977 aa12.09□□□□□ -0.47
CIITA-203ENST00000537380 LRP5O75197 1615 aa12.08□□□□□ -0.48
CIITA-203ENST00000537380 HEG1Q9ULI3 1381 aa12.08□□□□□ -0.48
CIITA-203ENST00000537380 IPO8O15397 1037 aaKnown RBP12.08□□□□□ -0.48
CIITA-203ENST00000537380 FKBP8Q14318 412 aa12.08□□□□□ -0.48
CIITA-203ENST00000537380 SLC52A2Q9HAB3 445 aa12.08□□□□□ -0.48
CIITA-203ENST00000537380 PPP1R1BQ9UD71 204 aaPredicted RBP12.08□□□□□ -0.48
CIITA-203ENST00000537380 MPRIPQ6WCQ1 1025 aa12.07□□□□□ -0.48
CIITA-203ENST00000537380 C8orf58Q8NAV2 365 aa12.07□□□□□ -0.48
CIITA-203ENST00000537380 BTBD11A6QL63 1104 aa12.06□□□□□ -0.48
CIITA-203ENST00000537380 BCAR3O75815 825 aa12.06□□□□□ -0.48
CIITA-203ENST00000537380 PROM2Q8N271 834 aa12.06□□□□□ -0.48
CIITA-203ENST00000537380 SSH1Q8WYL5 1049 aa12.06□□□□□ -0.48
CIITA-203ENST00000537380 PRIM1P49642 420 aaKnown RBP12.05□□□□□ -0.48
CIITA-203ENST00000537380 EIF4A1P60842 406 aaKnown RBP12.05□□□□□ -0.48
CIITA-203ENST00000537380 TSPYL6Q8N831 410 aa12.05□□□□□ -0.48
CIITA-203ENST00000537380 SMC4Q9NTJ3 1288 aa12.05□□□□□ -0.48
CIITA-203ENST00000537380 CCDC30Q5VVM6 783 aa12.04□□□□□ -0.48
CIITA-203ENST00000537380 ZKSCAN2Q63HK3 967 aa12.04□□□□□ -0.48
CIITA-203ENST00000537380 MRPL50Q8N5N7 158 aaKnown RBP12.04□□□□□ -0.48
CIITA-203ENST00000537380 QSER1Q2KHR3 1735 aa12.03□□□□□ -0.48
CIITA-203ENST00000537380 CABP4P57796 275 aa12.03□□□□□ -0.48
CIITA-203ENST00000537380 TXNRD1Q16881 649 aa12.03□□□□□ -0.48
CIITA-203ENST00000537380 ZNF790Q6PG37 636 aa12.03□□□□□ -0.48
CIITA-203ENST00000537380 ATF7IPQ6VMQ6 1270 aa12.03□□□□□ -0.48
CIITA-203ENST00000537380 PPP4R2Q9NY27 417 aa12.03□□□□□ -0.48
CIITA-203ENST00000537380 PTPRCP08575 1304 aa12.03□□□□□ -0.48
CIITA-203ENST00000537380 CASZ1Q86V15 1759 aa12.02□□□□□ -0.48
CIITA-203ENST00000537380 TAF1LQ8IZX4 1826 aa12.02□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms