RNA–Protein interactions for RNA: ENST00000535659.6

CNN1-202, Transcript of calponin 1, humanhuman

TSL 2 BASIC

Gene CNN1, Length 1,527 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNN1-202ENST00000535659 BCL11BQ9C0K0 894 aaPredicted RBP20.35■□□□□ 0.85
CNN1-202ENST00000535659 VIRMAQ69YN4 1812 aaKnown RBP20.34■□□□□ 0.85
CNN1-202ENST00000535659 BTBD11A6QL63 1104 aa20.33■□□□□ 0.85
CNN1-202ENST00000535659 TRIM37O94972 964 aa20.33■□□□□ 0.85
CNN1-202ENST00000535659 PTF1AQ7RTS3 328 aa20.33■□□□□ 0.85
CNN1-202ENST00000535659 IL16Q14005 1332 aa20.33■□□□□ 0.85
CNN1-202ENST00000535659 MRC1P22897 1456 aa20.33■□□□□ 0.84
CNN1-202ENST00000535659 GOLGA2Q08379 1002 aa20.32■□□□□ 0.84
CNN1-202ENST00000535659 CFAP44Q96MT7 982 aa20.32■□□□□ 0.84
CNN1-202ENST00000535659 BABAM1Q9NWV8 329 aa20.32■□□□□ 0.84
CNN1-202ENST00000535659 MIS18AQ9NYP9 233 aa20.32■□□□□ 0.84
CNN1-202ENST00000535659 LAS1LQ9Y4W2 734 aaKnown RBP20.32■□□□□ 0.84
CNN1-202ENST00000535659 CHL1O00533 1208 aa20.32■□□□□ 0.84
CNN1-202ENST00000535659 ZNF853P0CG23 659 aa20.32■□□□□ 0.84
CNN1-202ENST00000535659 GNAI1P63096 354 aa20.32■□□□□ 0.84
CNN1-202ENST00000535659 IFT57Q9NWB7 429 aa20.32■□□□□ 0.84
CNN1-202ENST00000535659 ZBED9Q6R2W3 1325 aa20.31■□□□□ 0.84
CNN1-202ENST00000535659 NHSQ6T4R5 1651 aa20.31■□□□□ 0.84
CNN1-202ENST00000535659 KAT6BQ8WYB5 2073 aa20.31■□□□□ 0.84
CNN1-202ENST00000535659 ITGB4P16144 1822 aa20.3■□□□□ 0.84
CNN1-202ENST00000535659 SBF2Q86WG5 1849 aa20.3■□□□□ 0.84
CNN1-202ENST00000535659 SLC39A6Q13433 755 aa20.29■□□□□ 0.84
CNN1-202ENST00000535659 ATG3Q9NT62 314 aa20.29■□□□□ 0.84
CNN1-202ENST00000535659 TSPYL4Q9UJ04 414 aa20.29■□□□□ 0.84
CNN1-202ENST00000535659 ASAP1Q9ULH1 1129 aa20.29■□□□□ 0.84
CNN1-202ENST00000535659 SIPA1L3O60292 1781 aaPredicted RBP20.29■□□□□ 0.84
CNN1-202ENST00000535659 ZNF790Q6PG37 636 aa20.28■□□□□ 0.84
CNN1-202ENST00000535659 SPINK5Q9NQ38 1064 aaPredicted RBP20.28■□□□□ 0.84
CNN1-202ENST00000535659 CDCA7LQ96GN5 454 aa20.27■□□□□ 0.84
CNN1-202ENST00000535659 E9PSI1 815 aa20.27■□□□□ 0.83
CNN1-202ENST00000535659 KCNQ3O43525 872 aa20.27■□□□□ 0.83
CNN1-202ENST00000535659 SLFN5Q08AF3 891 aa20.27■□□□□ 0.83
CNN1-202ENST00000535659 TTC5Q8N0Z6 440 aa20.27■□□□□ 0.83
CNN1-202ENST00000535659 SMARCC1Q92922 1105 aaPredicted RBP20.27■□□□□ 0.83
CNN1-202ENST00000535659 MBIPQ9NS73 344 aa20.27■□□□□ 0.83
CNN1-202ENST00000535659 MYH16Q9H6N6 1097 aa20.26■□□□□ 0.83
CNN1-202ENST00000535659 APBA3O96018 575 aa20.25■□□□□ 0.83
CNN1-202ENST00000535659 CCDC125Q86Z20 511 aa20.25■□□□□ 0.83
CNN1-202ENST00000535659 TRMT2AQ8IZ69 625 aaKnown RBP20.23■□□□□ 0.83
CNN1-202ENST00000535659 TSR2Q969E8 191 aaKnown RBP20.23■□□□□ 0.83
CNN1-202ENST00000535659 BTAF1O14981 1849 aa20.23■□□□□ 0.83
CNN1-202ENST00000535659 PLSCR1O15162 318 aa20.22■□□□□ 0.83
CNN1-202ENST00000535659 PTCD1O75127 700 aaKnown RBP20.22■□□□□ 0.83
CNN1-202ENST00000535659 EIF4A1P60842 406 aaKnown RBP20.22■□□□□ 0.83
CNN1-202ENST00000535659 SF3B2Q13435 895 aaKnown RBP20.22■□□□□ 0.83
CNN1-202ENST00000535659 PAPPAQ13219 1627 aa20.22■□□□□ 0.83
CNN1-202ENST00000535659 SRCAPQ6ZRS2 3230 aa20.22■□□□□ 0.83
CNN1-202ENST00000535659 ZNF496Q96IT1 587 aaPredicted RBP20.22■□□□□ 0.83
CNN1-202ENST00000535659 FMNL2Q96PY5 1086 aa20.22■□□□□ 0.83
CNN1-202ENST00000535659 RBM42Q9BTD8 480 aaKnown RBP20.22■□□□□ 0.83
CNN1-202ENST00000535659 FANCIQ9NVI1 1328 aa20.21■□□□□ 0.83
CNN1-202ENST00000535659 PALLDQ8WX93 1383 aa20.2■□□□□ 0.82
CNN1-202ENST00000535659 KDM3BQ7LBC6 1761 aa20.2■□□□□ 0.82
CNN1-202ENST00000535659 TNS1Q9HBL0 1735 aaKnown RBP20.2■□□□□ 0.82
CNN1-202ENST00000535659 DUSP27Q5VZP5 1158 aa20.19■□□□□ 0.82
CNN1-202ENST00000535659 LOC102724428A0A0B4J2F2 783 aa20.18■□□□□ 0.82
CNN1-202ENST00000535659 SIK1P57059 783 aa20.18■□□□□ 0.82
CNN1-202ENST00000535659 VSIG10Q8N0Z9 540 aa20.18■□□□□ 0.82
CNN1-202ENST00000535659 EXOSC9Q06265 439 aaKnown RBP20.17■□□□□ 0.82
CNN1-202ENST00000535659 SLC4A9Q96Q91 983 aa20.17■□□□□ 0.82
CNN1-202ENST00000535659 KCPQ6ZWJ8 1503 aa20.17■□□□□ 0.82
CNN1-202ENST00000535659 HEG1Q9ULI3 1381 aa20.17■□□□□ 0.82
CNN1-202ENST00000535659 GIGYF1O75420 1035 aaPredicted RBP20.17■□□□□ 0.82
CNN1-202ENST00000535659 SNRPA1P09661 255 aaKnown RBP20.17■□□□□ 0.82
CNN1-202ENST00000535659 ATP6V1AP38606 617 aa20.17■□□□□ 0.82
CNN1-202ENST00000535659 BAG6P46379 1132 aa20.17■□□□□ 0.82
CNN1-202ENST00000535659 C8orf58Q8NAV2 365 aa20.17■□□□□ 0.82
CNN1-202ENST00000535659 UBR2Q8IWV8 1755 aa20.16■□□□□ 0.82
CNN1-202ENST00000535659 ELL2O00472 640 aaPredicted RBP20.16■□□□□ 0.82
CNN1-202ENST00000535659 KRT24Q2M2I5 525 aa20.16■□□□□ 0.82
CNN1-202ENST00000535659 PROM2Q8N271 834 aa20.16■□□□□ 0.82
CNN1-202ENST00000535659 TEX13AQ9BXU3 409 aaPredicted RBP20.16■□□□□ 0.82
CNN1-202ENST00000535659 EN1Q05925 392 aaPredicted RBP20.15■□□□□ 0.82
CNN1-202ENST00000535659 TXNRD1Q16881 649 aa20.15■□□□□ 0.82
CNN1-202ENST00000535659 CAMKK2Q96RR4 588 aa20.15■□□□□ 0.82
CNN1-202ENST00000535659 CCNL1Q9UK58 526 aaPredicted RBP20.15■□□□□ 0.82
CNN1-202ENST00000535659 SLC27A3Q5K4L6 730 aa20.14■□□□□ 0.81
CNN1-202ENST00000535659 TSPYL6Q8N831 410 aa20.14■□□□□ 0.81
CNN1-202ENST00000535659 PRAMEF22A3QJZ6 481 aa20.13■□□□□ 0.81
CNN1-202ENST00000535659 DEFB132Q7Z7B7 95 aa20.13■□□□□ 0.81
CNN1-202ENST00000535659 USP16Q9Y5T5 823 aa20.13■□□□□ 0.81
CNN1-202ENST00000535659 HOXB7P09629 217 aa20.12■□□□□ 0.81
CNN1-202ENST00000535659 KCNQ4P56696 695 aa20.12■□□□□ 0.81
CNN1-202ENST00000535659 EZH2Q15910 746 aaKnown RBP20.12■□□□□ 0.81
CNN1-202ENST00000535659 TWISTNBQ3B726 338 aaPredicted RBP20.12■□□□□ 0.81
CNN1-202ENST00000535659 DNAJC10Q8IXB1 793 aa20.12■□□□□ 0.81
CNN1-202ENST00000535659 SOS1Q07889 1333 aaPredicted RBP20.12■□□□□ 0.81
CNN1-202ENST00000535659 LY75O60449 1722 aa20.12■□□□□ 0.81
CNN1-202ENST00000535659 HMGB2P26583 209 aaKnown RBP20.12■□□□□ 0.81
CNN1-202ENST00000535659 ITPK1Q13572 414 aa20.12■□□□□ 0.81
CNN1-202ENST00000535659 LRRC4BQ9NT99 713 aa20.12■□□□□ 0.81
CNN1-202ENST00000535659 VAMP4O75379 141 aa20.11■□□□□ 0.81
CNN1-202ENST00000535659 STARD3NLO95772 234 aa20.11■□□□□ 0.81
CNN1-202ENST00000535659 CHMP4AQ9BY43 222 aa20.1■□□□□ 0.81
CNN1-202ENST00000535659 CYP19A1P11511 503 aaPredicted RBP20.09■□□□□ 0.81
CNN1-202ENST00000535659 EIF2S2P20042 333 aaKnown RBP20.09■□□□□ 0.81
CNN1-202ENST00000535659 RGPD3A6NKT7 1758 aaPredicted RBP20.09■□□□□ 0.81
CNN1-202ENST00000535659 RGPD4Q7Z3J3 1758 aa20.09■□□□□ 0.81
CNN1-202ENST00000535659 CT47B1P0C2W7 299 aaPredicted RBP20.08■□□□□ 0.81
CNN1-202ENST00000535659 LINC00116Q8NCU8 138 aa20.07■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms