RNA–Protein interactions for RNA: ENST00000534405.5

SMPD1-210, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene SMPD1, Length 2,446 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-210ENST00000534405 USP6P35125 1406 aa23.35■■□□□ 1.33
SMPD1-210ENST00000534405 PLEKHG3A1L390 1219 aa23.35■■□□□ 1.33
SMPD1-210ENST00000534405 PLCD3Q8N3E9 789 aa23.35■■□□□ 1.33
SMPD1-210ENST00000534405 KIF2CQ99661 725 aa23.35■■□□□ 1.33
SMPD1-210ENST00000534405 LMBRD1Q9NUN5 540 aa23.35■■□□□ 1.33
SMPD1-210ENST00000534405 KIF3AQ9Y496 699 aa23.35■■□□□ 1.33
SMPD1-210ENST00000534405 PAXIP1Q6ZW49 1069 aaPredicted RBP23.34■■□□□ 1.33
SMPD1-210ENST00000534405 PTPRUQ92729 1446 aa23.34■■□□□ 1.33
SMPD1-210ENST00000534405 SOX12O15370 315 aa23.33■■□□□ 1.33
SMPD1-210ENST00000534405 SLC20A2Q08357 652 aa23.33■■□□□ 1.33
SMPD1-210ENST00000534405 SLC26A8Q96RN1 970 aa23.33■■□□□ 1.33
SMPD1-210ENST00000534405 RGS12O14924 1447 aa23.33■■□□□ 1.33
SMPD1-210ENST00000534405 CHL1O00533 1208 aa23.33■■□□□ 1.33
SMPD1-210ENST00000534405 DNTTIP2Q5QJE6 756 aaKnown RBP23.33■■□□□ 1.33
SMPD1-210ENST00000534405 FOXD4L1Q9NU39 408 aa23.33■■□□□ 1.33
SMPD1-210ENST00000534405 PLEKHG1Q9ULL1 1385 aa23.32■■□□□ 1.32
SMPD1-210ENST00000534405 ZBTB22O15209 634 aa23.32■■□□□ 1.32
SMPD1-210ENST00000534405 PDCL2Q8N4E4 241 aa23.32■■□□□ 1.32
SMPD1-210ENST00000534405 CD2BP2O95400 341 aaKnown RBP23.32■■□□□ 1.32
SMPD1-210ENST00000534405 LRSAM1Q6UWE0 723 aa23.32■■□□□ 1.32
SMPD1-210ENST00000534405 TBC1D9Q6ZT07 1266 aa23.32■■□□□ 1.32
SMPD1-210ENST00000534405 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP23.32■■□□□ 1.32
SMPD1-210ENST00000534405 NALCNQ8IZF0 1738 aa23.32■■□□□ 1.32
SMPD1-210ENST00000534405 RGPD1P0DJD0 1748 aa23.31■■□□□ 1.32
SMPD1-210ENST00000534405 BCL2L12Q9HB09 334 aa23.31■■□□□ 1.32
SMPD1-210ENST00000534405 SPDYE4A6NLX3 237 aa23.31■■□□□ 1.32
SMPD1-210ENST00000534405 MCTP1Q6DN14 999 aa23.31■■□□□ 1.32
SMPD1-210ENST00000534405 CEBPAP49715 358 aaPredicted RBP23.3■■□□□ 1.32
SMPD1-210ENST00000534405 INTS3Q68E01 1043 aaKnown RBP23.3■■□□□ 1.32
SMPD1-210ENST00000534405 GAS2L2Q8NHY3 880 aa23.3■■□□□ 1.32
SMPD1-210ENST00000534405 PIBF1Q8WXW3 757 aa23.3■■□□□ 1.32
SMPD1-210ENST00000534405 USP31Q70CQ4 1352 aa23.3■■□□□ 1.32
SMPD1-210ENST00000534405 SSH2Q76I76 1423 aa23.3■■□□□ 1.32
SMPD1-210ENST00000534405 KIF24Q5T7B8 1368 aa23.29■■□□□ 1.32
SMPD1-210ENST00000534405 IRX5P78411 483 aaPredicted RBP23.29■■□□□ 1.32
SMPD1-210ENST00000534405 ZNF771Q7L3S4 317 aaPredicted RBP23.29■■□□□ 1.32
SMPD1-210ENST00000534405 FEZ1Q99689 392 aa23.29■■□□□ 1.32
SMPD1-210ENST00000534405 ATP10DQ9P241 1426 aa23.28■■□□□ 1.32
SMPD1-210ENST00000534405 GSPT1P15170 499 aaKnown RBP23.28■■□□□ 1.32
SMPD1-210ENST00000534405 DCTPP1Q9H773 170 aa23.28■■□□□ 1.32
SMPD1-210ENST00000534405 FOXO3O43524 673 aa23.27■■□□□ 1.32
SMPD1-210ENST00000534405 ANKRD7Q92527 254 aa23.27■■□□□ 1.32
SMPD1-210ENST00000534405 CRB1P82279 1406 aa23.27■■□□□ 1.32
SMPD1-210ENST00000534405 PLEKHM2Q8IWE5 1019 aa23.27■■□□□ 1.31
SMPD1-210ENST00000534405 MAP3K19Q56UN5 1328 aa23.26■■□□□ 1.31
SMPD1-210ENST00000534405 KIAA0232Q92628 1395 aa23.26■■□□□ 1.31
SMPD1-210ENST00000534405 CYP2E1P05181 493 aaPredicted RBP23.26■■□□□ 1.31
SMPD1-210ENST00000534405 GABPB1Q06547 395 aaPredicted RBP23.26■■□□□ 1.31
SMPD1-210ENST00000534405 MIS18AQ9NYP9 233 aa23.26■■□□□ 1.31
SMPD1-210ENST00000534405 NUCB2P80303 420 aa23.25■■□□□ 1.31
SMPD1-210ENST00000534405 NOLC1Q14978 699 aaKnown RBP eCLIP23.25■■□□□ 1.31
SMPD1-210ENST00000534405 PTMAP06454 111 aaKnown RBP23.25■■□□□ 1.31
SMPD1-210ENST00000534405 C16orf71Q8IYS4 520 aaPredicted RBP23.25■■□□□ 1.31
SMPD1-210ENST00000534405 MSH6P52701 1360 aa23.25■■□□□ 1.31
SMPD1-210ENST00000534405 RIMS1Q86UR5 1692 aaKnown RBP23.24■■□□□ 1.31
SMPD1-210ENST00000534405 IGSF3O75054 1194 aa23.24■■□□□ 1.31
SMPD1-210ENST00000534405 ANKRD44Q8N8A2 993 aa23.24■■□□□ 1.31
SMPD1-210ENST00000534405 GPT2Q8TD30 523 aa23.24■■□□□ 1.31
SMPD1-210ENST00000534405 AMOTL2Q9Y2J4 779 aa23.24■■□□□ 1.31
SMPD1-210ENST00000534405 U2AF2P26368 475 aaKnown RBP eCLIP23.23■■□□□ 1.31
SMPD1-210ENST00000534405 RBM42Q9BTD8 480 aaKnown RBP23.23■■□□□ 1.31
SMPD1-210ENST00000534405 OGFRQ9NZT2 677 aa23.23■■□□□ 1.31
SMPD1-210ENST00000534405 FKBP5Q13451 457 aaPredicted RBP23.23■■□□□ 1.31
SMPD1-210ENST00000534405 SPTLC3Q9NUV7 552 aa23.23■■□□□ 1.31
SMPD1-210ENST00000534405 MTHFSDQ2M296 383 aaKnown RBP23.22■■□□□ 1.31
SMPD1-210ENST00000534405 CEP85Q6P2H3 762 aa23.22■■□□□ 1.31
SMPD1-210ENST00000534405 DNAJC2Q99543 621 aaKnown RBP23.22■■□□□ 1.31
SMPD1-210ENST00000534405 RBM27Q9P2N5 1060 aaKnown RBP23.22■■□□□ 1.31
SMPD1-210ENST00000534405 OTUD7AQ8TE49 926 aaPredicted RBP23.22■■□□□ 1.31
SMPD1-210ENST00000534405 MEIS3Q99687 375 aa23.22■■□□□ 1.31
SMPD1-210ENST00000534405 CDC45O75419 566 aa23.21■■□□□ 1.31
SMPD1-210ENST00000534405 AEBP2Q6ZN18 517 aaPredicted RBP23.21■■□□□ 1.31
SMPD1-210ENST00000534405 RTL1A6NKG5 1358 aa23.21■■□□□ 1.31
SMPD1-210ENST00000534405 ARHGEF10O15013 1369 aa23.21■■□□□ 1.31
SMPD1-210ENST00000534405 FAM177BA6PVY3 158 aa23.21■■□□□ 1.31
SMPD1-210ENST00000534405 SLC4A2P04920 1241 aa23.2■■□□□ 1.3
SMPD1-210ENST00000534405 HAP1P54257 671 aaPredicted RBP23.2■■□□□ 1.3
SMPD1-210ENST00000534405 TMEM63CQ9P1W3 806 aa23.2■■□□□ 1.3
SMPD1-210ENST00000534405 FMN2Q9NZ56 1722 aa23.2■■□□□ 1.3
SMPD1-210ENST00000534405 RGPD8O14715 1765 aaPredicted RBP23.2■■□□□ 1.3
SMPD1-210ENST00000534405 PTPRCP08575 1304 aa23.19■■□□□ 1.3
SMPD1-210ENST00000534405 SYCE3A1L190 88 aa23.19■■□□□ 1.3
SMPD1-210ENST00000534405 KCNJ4P48050 445 aa23.19■■□□□ 1.3
SMPD1-210ENST00000534405 TTC21AQ8NDW8 1320 aa23.19■■□□□ 1.3
SMPD1-210ENST00000534405 TTC22Q5TAA0 569 aa23.19■■□□□ 1.3
SMPD1-210ENST00000534405 G2E3Q7L622 706 aa23.19■■□□□ 1.3
SMPD1-210ENST00000534405 PLPPR3Q6T4P5 718 aa23.18■■□□□ 1.3
SMPD1-210ENST00000534405 RPAP2Q8IXW5 612 aaPredicted RBP23.18■■□□□ 1.3
SMPD1-210ENST00000534405 EID1Q9Y6B2 187 aa23.18■■□□□ 1.3
SMPD1-210ENST00000534405 CEP170BQ9Y4F5 1589 aaPredicted RBP23.18■■□□□ 1.3
SMPD1-210ENST00000534405 FLT4P35916 1363 aa23.18■■□□□ 1.3
SMPD1-210ENST00000534405 CCDC66A2RUB6 948 aa23.18■■□□□ 1.3
SMPD1-210ENST00000534405 SBNO1A3KN83 1393 aa23.17■■□□□ 1.3
SMPD1-210ENST00000534405 SMARCA5O60264 1052 aaPredicted RBP23.17■■□□□ 1.3
SMPD1-210ENST00000534405 EYA1Q99502 592 aa23.17■■□□□ 1.3
SMPD1-210ENST00000534405 KDRP35968 1356 aa23.17■■□□□ 1.3
SMPD1-210ENST00000534405 PRPF40AO75400 957 aaKnown RBP23.17■■□□□ 1.3
SMPD1-210ENST00000534405 APBB1O00213 710 aa23.16■■□□□ 1.3
SMPD1-210ENST00000534405 CTIFO43310 598 aaKnown RBP23.16■■□□□ 1.3
SMPD1-210ENST00000534405 SLFN14P0C7P3 912 aa23.16■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms