RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 LINC00528Q8N1L1 170 aa7.82□□□□□ -1.16
CD44-236ENST00000533222 AAASQ9NRG9 546 aa7.82□□□□□ -1.16
CD44-236ENST00000533222 A0A1W2PRU2 124 aa7.81□□□□□ -1.16
CD44-236ENST00000533222 AXIN1O15169 862 aa7.81□□□□□ -1.16
CD44-236ENST00000533222 PPP1R15AO75807 674 aaPredicted RBP7.81□□□□□ -1.16
CD44-236ENST00000533222 PTGIRP43119 386 aa7.81□□□□□ -1.16
CD44-236ENST00000533222 SMCPP49901 116 aaPredicted RBP7.81□□□□□ -1.16
CD44-236ENST00000533222 LAPTM4AQ15012 233 aa7.81□□□□□ -1.16
CD44-236ENST00000533222 TMEM164Q5U3C3 297 aa7.81□□□□□ -1.16
CD44-236ENST00000533222 MRPL14Q6P1L8 145 aaKnown RBP7.81□□□□□ -1.16
CD44-236ENST00000533222 ANKMY2Q8IV38 441 aa7.81□□□□□ -1.16
CD44-236ENST00000533222 LARGE2Q8N3Y3 721 aa7.81□□□□□ -1.16
CD44-236ENST00000533222 ZNF358Q9NW07 568 aa7.81□□□□□ -1.16
CD44-236ENST00000533222 SERTAD1Q9UHV2 236 aa7.81□□□□□ -1.16
CD44-236ENST00000533222 CRIPAKQ8N1N5 446 aa7.8□□□□□ -1.16
CD44-236ENST00000533222 PURBQ96QR8 312 aaKnown RBP7.8□□□□□ -1.16
CD44-236ENST00000533222 INSM2Q96T92 566 aaPredicted RBP7.8□□□□□ -1.16
CD44-236ENST00000533222 MEN1O00255 615 aa7.79□□□□□ -1.16
CD44-236ENST00000533222 GNRH1P01148 92 aa7.79□□□□□ -1.16
CD44-236ENST00000533222 CTC1Q2NKJ3 1217 aa7.79□□□□□ -1.16
CD44-236ENST00000533222 Q6ZNB5 142 aa7.79□□□□□ -1.16
CD44-236ENST00000533222 TSEN2Q8NCE0 465 aaKnown RBP7.79□□□□□ -1.16
CD44-236ENST00000533222 GAS2L2Q8NHY3 880 aa7.79□□□□□ -1.16
CD44-236ENST00000533222 SLAIN2Q9P270 581 aa7.79□□□□□ -1.16
CD44-236ENST00000533222 USP3Q9Y6I4 520 aa7.79□□□□□ -1.16
CD44-236ENST00000533222 INHAP05111 366 aa7.78□□□□□ -1.16
CD44-236ENST00000533222 BMP2P12643 396 aa7.78□□□□□ -1.16
CD44-236ENST00000533222 CTSOP43234 321 aaPredicted RBP7.78□□□□□ -1.16
CD44-236ENST00000533222 FGD1P98174 961 aa7.78□□□□□ -1.16
CD44-236ENST00000533222 ELOAQ14241 798 aaKnown RBP7.78□□□□□ -1.16
CD44-236ENST00000533222 FOXD4L5Q5VV16 416 aaPredicted RBP7.78□□□□□ -1.16
CD44-236ENST00000533222 HRH3Q9Y5N1 445 aa7.78□□□□□ -1.16
CD44-236ENST00000533222 TMEM88BA6NKF7 163 aa7.77□□□□□ -1.17
CD44-236ENST00000533222 SPINT1O43278 529 aa7.77□□□□□ -1.17
CD44-236ENST00000533222 FAM69CQ0P6D2 419 aa7.77□□□□□ -1.17
CD44-236ENST00000533222 CLN3Q13286 438 aa7.77□□□□□ -1.17
CD44-236ENST00000533222 CNKSR1Q969H4 720 aa7.77□□□□□ -1.17
CD44-236ENST00000533222 ZFP42Q96MM3 310 aa7.77□□□□□ -1.17
CD44-236ENST00000533222 TSEN34Q9BSV6 310 aaKnown RBP7.77□□□□□ -1.17
CD44-236ENST00000533222 ATP13A2Q9NQ11 1180 aa7.77□□□□□ -1.17
CD44-236ENST00000533222 WASLO00401 505 aaPredicted RBP7.76□□□□□ -1.17
CD44-236ENST00000533222 SEC13P55735 322 aa7.76□□□□□ -1.17
CD44-236ENST00000533222 TBCELQ5QJ74 424 aa7.76□□□□□ -1.17
CD44-236ENST00000533222 TNS4Q8IZW8 715 aa7.76□□□□□ -1.17
CD44-236ENST00000533222 FAM200AQ8TCP9 573 aa7.76□□□□□ -1.17
CD44-236ENST00000533222 XAGE2Q96GT9 111 aa7.76□□□□□ -1.17
CD44-236ENST00000533222 FHDC1Q9C0D6 1143 aaPredicted RBP7.76□□□□□ -1.17
CD44-236ENST00000533222 SOBPA7XYQ1 873 aa7.75□□□□□ -1.17
CD44-236ENST00000533222 EPHA4P54764 986 aa7.75□□□□□ -1.17
CD44-236ENST00000533222 TLR1Q15399 786 aa7.75□□□□□ -1.17
CD44-236ENST00000533222 NPM2Q86SE8 214 aaKnown RBP7.75□□□□□ -1.17
CD44-236ENST00000533222 ESYT1Q9BSJ8 1104 aa7.75□□□□□ -1.17
CD44-236ENST00000533222 POLMQ9NP87 494 aaPredicted RBP7.75□□□□□ -1.17
CD44-236ENST00000533222 UPP2O95045 317 aa7.74□□□□□ -1.17
CD44-236ENST00000533222 CSB-PGBD3P0DP91 1061 aa7.74□□□□□ -1.17
CD44-236ENST00000533222 BRD2P25440 801 aaKnown RBP7.74□□□□□ -1.17
CD44-236ENST00000533222 CENPCQ03188 943 aa7.74□□□□□ -1.17
CD44-236ENST00000533222 ESCO1Q5FWF5 840 aa7.74□□□□□ -1.17
CD44-236ENST00000533222 TRIM52Q96A61 297 aa7.74□□□□□ -1.17
CD44-236ENST00000533222 FIGNL2A6NMB9 653 aa7.73□□□□□ -1.17
CD44-236ENST00000533222 SCARF1Q14162 830 aa7.73□□□□□ -1.17
CD44-236ENST00000533222 RNF217Q8TC41 542 aa7.73□□□□□ -1.17
CD44-236ENST00000533222 NLRP3Q96P20 1036 aa7.73□□□□□ -1.17
CD44-236ENST00000533222 SLC4A9Q96Q91 983 aa7.73□□□□□ -1.17
CD44-236ENST00000533222 TSPAN10Q9H1Z9 355 aaPredicted RBP7.73□□□□□ -1.17
CD44-236ENST00000533222 GMPR2Q9P2T1 348 aaKnown RBP7.73□□□□□ -1.17
CD44-236ENST00000533222 PRMT3O60678 531 aa7.72□□□□□ -1.17
CD44-236ENST00000533222 SMTNP53814 917 aa7.72□□□□□ -1.17
CD44-236ENST00000533222 PRIMPOLQ96LW4 560 aa7.72□□□□□ -1.17
CD44-236ENST00000533222 DNMT3LQ9UJW3 386 aa7.72□□□□□ -1.17
CD44-236ENST00000533222 RBM19Q9Y4C8 960 aaKnown RBP7.72□□□□□ -1.17
CD44-236ENST00000533222 SOS2Q07890 1332 aaPredicted RBP7.72□□□□□ -1.17
CD44-236ENST00000533222 A6NJY4 79 aa7.71□□□□□ -1.18
CD44-236ENST00000533222 TTLL8A6PVC2 850 aa7.71□□□□□ -1.18
CD44-236ENST00000533222 POTECB2RU33 542 aa7.71□□□□□ -1.18
CD44-236ENST00000533222 C21orf2O43822 256 aa7.71□□□□□ -1.18
CD44-236ENST00000533222 SCNN1AP37088 669 aa7.71□□□□□ -1.18
CD44-236ENST00000533222 FOXK2Q01167 660 aa7.71□□□□□ -1.18
CD44-236ENST00000533222 MTFR1Q15390 333 aa7.71□□□□□ -1.18
CD44-236ENST00000533222 HINFPQ9BQA5 517 aa7.71□□□□□ -1.18
CD44-236ENST00000533222 IQSEC3Q9UPP2 1182 aaPredicted RBP7.71□□□□□ -1.18
CD44-236ENST00000533222 M0R2N6 131 aa7.7□□□□□ -1.18
CD44-236ENST00000533222 BACH1O14867 736 aa7.7□□□□□ -1.18
CD44-236ENST00000533222 RHOQP17081 205 aa7.7□□□□□ -1.18
CD44-236ENST00000533222 RNF144AP50876 292 aaPredicted RBP7.7□□□□□ -1.18
CD44-236ENST00000533222 SH3PXD2AQ5TCZ1 1133 aa7.7□□□□□ -1.18
CD44-236ENST00000533222 SLC9A9Q8IVB4 645 aa7.7□□□□□ -1.18
CD44-236ENST00000533222 ZNF295-AS1Q8N0V1 137 aa7.7□□□□□ -1.18
CD44-236ENST00000533222 GRIP2Q9C0E4 1043 aa7.7□□□□□ -1.18
CD44-236ENST00000533222 SCHIP1Q9P0W5 487 aaPredicted RBP7.7□□□□□ -1.18
CD44-236ENST00000533222 USTQ9Y2C2 406 aa7.7□□□□□ -1.18
CD44-236ENST00000533222 HMGB1P09429 215 aaKnown RBP7.69□□□□□ -1.18
CD44-236ENST00000533222 OCLNQ16625 522 aa7.69□□□□□ -1.18
CD44-236ENST00000533222 SWI5Q1ZZU3 235 aa7.69□□□□□ -1.18
CD44-236ENST00000533222 SLC27A3Q5K4L6 730 aa7.69□□□□□ -1.18
CD44-236ENST00000533222 PRICKLE2Q7Z3G6 844 aa7.69□□□□□ -1.18
CD44-236ENST00000533222 ZDHHC1Q8WTX9 485 aa7.69□□□□□ -1.18
CD44-236ENST00000533222 SCG3Q8WXD2 468 aaKnown RBP7.69□□□□□ -1.18
CD44-236ENST00000533222 CLP1Q92989 425 aaKnown RBP7.69□□□□□ -1.18
CD44-236ENST00000533222 ZSCAN10Q96SZ4 725 aaPredicted RBP7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms