RNA–Protein interactions for RNA: ENST00000532542.1

TRIM3-211, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 4,419 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-211ENST00000532542 GBP4Q96PP9 640 aa13.62□□□□□ -0.23
TRIM3-211ENST00000532542 CABLES1Q8TDN4 633 aa13.62□□□□□ -0.23
TRIM3-211ENST00000532542 MEIS3Q99687 375 aa13.62□□□□□ -0.23
TRIM3-211ENST00000532542 OVOS2A0A0J9YW53 1432 aa13.62□□□□□ -0.23
TRIM3-211ENST00000532542 OVOS2Q6IE36 1432 aa13.62□□□□□ -0.23
TRIM3-211ENST00000532542 MSH5O43196 834 aa13.62□□□□□ -0.23
TRIM3-211ENST00000532542 MYL6BP14649 208 aa13.62□□□□□ -0.23
TRIM3-211ENST00000532542 NCLP19338 710 aaKnown RBP13.62□□□□□ -0.23
TRIM3-211ENST00000532542 C8orf34Q49A92 452 aa13.62□□□□□ -0.23
TRIM3-211ENST00000532542 BMP2KLQ5H9B9 411 aa13.62□□□□□ -0.23
TRIM3-211ENST00000532542 HOXB7P09629 217 aa13.61□□□□□ -0.23
TRIM3-211ENST00000532542 GORABQ5T7V8 394 aa13.61□□□□□ -0.23
TRIM3-211ENST00000532542 DIAPH3Q9NSV4 1193 aa13.61□□□□□ -0.23
TRIM3-211ENST00000532542 ARHGEF25Q86VW2 580 aa13.61□□□□□ -0.23
TRIM3-211ENST00000532542 RNMTO43148 476 aaKnown RBP13.61□□□□□ -0.23
TRIM3-211ENST00000532542 LARP1Q6PKG0 1096 aaKnown RBP13.61□□□□□ -0.23
TRIM3-211ENST00000532542 FMNL2Q96PY5 1086 aa13.61□□□□□ -0.23
TRIM3-211ENST00000532542 EXOC6BQ9Y2D4 811 aa13.61□□□□□ -0.23
TRIM3-211ENST00000532542 ABCC4O15439 1325 aa13.6□□□□□ -0.23
TRIM3-211ENST00000532542 LRRFIP2Q9Y608 721 aaKnown RBP13.6□□□□□ -0.23
TRIM3-211ENST00000532542 PI4KAP2A4QPH2 592 aa13.59□□□□□ -0.23
TRIM3-211ENST00000532542 PTMSP20962 102 aa13.59□□□□□ -0.23
TRIM3-211ENST00000532542 PI4KAP1Q8N8J0 262 aa13.59□□□□□ -0.23
TRIM3-211ENST00000532542 RIMS1Q86UR5 1692 aaKnown RBP13.59□□□□□ -0.23
TRIM3-211ENST00000532542 SETD1BQ9UPS6 1966 aaKnown RBP13.59□□□□□ -0.23
TRIM3-211ENST00000532542 RAB11FIP3O75154 756 aa13.59□□□□□ -0.23
TRIM3-211ENST00000532542 FGD1P98174 961 aa13.59□□□□□ -0.23
TRIM3-211ENST00000532542 ANO2Q9NQ90 1003 aa13.59□□□□□ -0.23
TRIM3-211ENST00000532542 CHPF2Q9P2E5 772 aa13.59□□□□□ -0.23
TRIM3-211ENST00000532542 UBR1Q8IWV7 1749 aa13.59□□□□□ -0.23
TRIM3-211ENST00000532542 IL17REQ8NFR9 667 aa13.59□□□□□ -0.23
TRIM3-211ENST00000532542 NPHP1O15259 732 aa13.58□□□□□ -0.24
TRIM3-211ENST00000532542 CNTROBQ8N137 903 aa13.58□□□□□ -0.24
TRIM3-211ENST00000532542 DCTPP1Q9H773 170 aa13.58□□□□□ -0.24
TRIM3-211ENST00000532542 CHMP5Q9NZZ3 219 aa13.58□□□□□ -0.24
TRIM3-211ENST00000532542 KIF1BPQ96EK5 621 aa13.57□□□□□ -0.24
TRIM3-211ENST00000532542 SNRPA1P09661 255 aaKnown RBP13.57□□□□□ -0.24
TRIM3-211ENST00000532542 DEKP35659 375 aaKnown RBP13.57□□□□□ -0.24
TRIM3-211ENST00000532542 LGR6Q9HBX8 967 aa13.57□□□□□ -0.24
TRIM3-211ENST00000532542 SLAIN2Q9P270 581 aa13.57□□□□□ -0.24
TRIM3-211ENST00000532542 ITSN1Q15811 1721 aa13.57□□□□□ -0.24
TRIM3-211ENST00000532542 COL3A1P02461 1466 aaPredicted RBP13.57□□□□□ -0.24
TRIM3-211ENST00000532542 CEP85Q6P2H3 762 aa13.57□□□□□ -0.24
TRIM3-211ENST00000532542 DCAF5Q96JK2 942 aa13.57□□□□□ -0.24
TRIM3-211ENST00000532542 G2E3Q7L622 706 aa13.57□□□□□ -0.24
TRIM3-211ENST00000532542 ZCRB1Q8TBF4 217 aaKnown RBP13.57□□□□□ -0.24
TRIM3-211ENST00000532542 SMARCA5O60264 1052 aaPredicted RBP13.56□□□□□ -0.24
TRIM3-211ENST00000532542 RBM42Q9BTD8 480 aaKnown RBP13.56□□□□□ -0.24
TRIM3-211ENST00000532542 KIF20BQ96Q89 1820 aa13.56□□□□□ -0.24
TRIM3-211ENST00000532542 MAP3K2Q9Y2U5 619 aa13.56□□□□□ -0.24
TRIM3-211ENST00000532542 DDX17Q92841 729 aaKnown RBP13.56□□□□□ -0.24
TRIM3-211ENST00000532542 MX1P20591 662 aa13.55□□□□□ -0.24
TRIM3-211ENST00000532542 KIF6Q6ZMV9 814 aa13.55□□□□□ -0.24
TRIM3-211ENST00000532542 TMOD3Q9NYL9 352 aa13.55□□□□□ -0.24
TRIM3-211ENST00000532542 ANXA1P04083 346 aa13.55□□□□□ -0.24
TRIM3-211ENST00000532542 RABEP1Q15276 862 aa13.55□□□□□ -0.24
TRIM3-211ENST00000532542 IL1RAPL2Q9NP60 686 aa13.55□□□□□ -0.24
TRIM3-211ENST00000532542 FOXD4L1Q9NU39 408 aa13.55□□□□□ -0.24
TRIM3-211ENST00000532542 ALDH1L1O75891 902 aa13.55□□□□□ -0.24
TRIM3-211ENST00000532542 TBC1D32Q96NH3 1257 aa13.55□□□□□ -0.24
TRIM3-211ENST00000532542 ATP8B2P98198 1209 aa13.54□□□□□ -0.24
TRIM3-211ENST00000532542 KSR2Q6VAB6 950 aa13.54□□□□□ -0.24
TRIM3-211ENST00000532542 PTCD1O75127 700 aaKnown RBP13.54□□□□□ -0.24
TRIM3-211ENST00000532542 EIF4A1P60842 406 aaKnown RBP13.54□□□□□ -0.24
TRIM3-211ENST00000532542 NFATC2IPQ8NCF5 419 aa13.54□□□□□ -0.24
TRIM3-211ENST00000532542 SLC39A6Q13433 755 aa13.53□□□□□ -0.24
TRIM3-211ENST00000532542 C3P01024 1663 aa13.53□□□□□ -0.24
TRIM3-211ENST00000532542 IL2RBP14784 551 aa13.53□□□□□ -0.24
TRIM3-211ENST00000532542 LRRFIP1Q32MZ4 808 aaKnown RBP13.53□□□□□ -0.24
TRIM3-211ENST00000532542 PPP1R42Q7Z4L9 355 aa13.53□□□□□ -0.24
TRIM3-211ENST00000532542 ZKSCAN1P17029 563 aaPredicted RBP13.53□□□□□ -0.24
TRIM3-211ENST00000532542 TTC22Q5TAA0 569 aa13.53□□□□□ -0.24
TRIM3-211ENST00000532542 MYD88Q99836 296 aa13.52□□□□□ -0.24
TRIM3-211ENST00000532542 DDX11L8A8MPP1 907 aa13.52□□□□□ -0.25
TRIM3-211ENST00000532542 STARD3NLO95772 234 aa13.52□□□□□ -0.25
TRIM3-211ENST00000532542 NFKBIBQ15653 356 aa13.52□□□□□ -0.25
TRIM3-211ENST00000532542 PHAXQ9H814 394 aaKnown RBP13.52□□□□□ -0.25
TRIM3-211ENST00000532542 USP19O94966 1318 aa13.52□□□□□ -0.25
TRIM3-211ENST00000532542 HIP1O00291 1037 aa13.52□□□□□ -0.25
TRIM3-211ENST00000532542 ZNF790Q6PG37 636 aa13.51□□□□□ -0.25
TRIM3-211ENST00000532542 TBC1D9Q6ZT07 1266 aa13.51□□□□□ -0.25
TRIM3-211ENST00000532542 DDX21Q9NR30 783 aaKnown RBP eCLIP13.51□□□□□ -0.25
TRIM3-211ENST00000532542 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.51□□□□□ -0.25
TRIM3-211ENST00000532542 KDRP35968 1356 aa13.51□□□□□ -0.25
TRIM3-211ENST00000532542 ERBB3P21860 1342 aa13.51□□□□□ -0.25
TRIM3-211ENST00000532542 PCDH11XQ9BZA7 1347 aa13.51□□□□□ -0.25
TRIM3-211ENST00000532542 PCDH11YQ9BZA8 1340 aa13.51□□□□□ -0.25
TRIM3-211ENST00000532542 NUTM2BA6NNL0 878 aaPredicted RBP13.51□□□□□ -0.25
TRIM3-211ENST00000532542 NUTM2EB1AL46 878 aaPredicted RBP13.51□□□□□ -0.25
TRIM3-211ENST00000532542 NUTM2AQ8IVF1 878 aaPredicted RBP13.51□□□□□ -0.25
TRIM3-211ENST00000532542 LINS1Q8NG48 757 aa13.51□□□□□ -0.25
TRIM3-211ENST00000532542 ANKRD13DQ6ZTN6 518 aa13.5□□□□□ -0.25
TRIM3-211ENST00000532542 MAP2P11137 1827 aaKnown RBP13.5□□□□□ -0.25
TRIM3-211ENST00000532542 NOL8Q76FK4 1167 aaKnown RBP13.5□□□□□ -0.25
TRIM3-211ENST00000532542 TEX13AQ9BXU3 409 aaPredicted RBP13.5□□□□□ -0.25
TRIM3-211ENST00000532542 SLC52A2Q9HAB3 445 aa13.5□□□□□ -0.25
TRIM3-211ENST00000532542 GTF2E1P29083 439 aaPredicted RBP13.5□□□□□ -0.25
TRIM3-211ENST00000532542 SIL1Q9H173 461 aa13.5□□□□□ -0.25
TRIM3-211ENST00000532542 EXOC5O00471 708 aa13.5□□□□□ -0.25
TRIM3-211ENST00000532542 GLRX3O76003 335 aaKnown RBP13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms