RNA–Protein interactions for RNA: ENST00000530567.1

CAPN1-220, Transcript of calpain 1, humanhuman

TSL 2

Gene CAPN1, Length 1,415 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-220ENST00000530567 RTF1Q92541 710 aaKnown RBP28.12■■■□□ 2.09
CAPN1-220ENST00000530567 PAPPAQ13219 1627 aa28.12■■■□□ 2.09
CAPN1-220ENST00000530567 PLSCR1O15162 318 aa28.11■■■□□ 2.09
CAPN1-220ENST00000530567 BAG6P46379 1132 aa28.11■■■□□ 2.09
CAPN1-220ENST00000530567 TRIM35Q9UPQ4 493 aa28.11■■■□□ 2.09
CAPN1-220ENST00000530567 LY75O60449 1722 aa28.11■■■□□ 2.09
CAPN1-220ENST00000530567 EN1Q05925 392 aaPredicted RBP28.1■■■□□ 2.09
CAPN1-220ENST00000530567 NEUROD2Q15784 382 aa28.1■■■□□ 2.09
CAPN1-220ENST00000530567 CAMKK2Q96RR4 588 aa28.1■■■□□ 2.09
CAPN1-220ENST00000530567 THUMPD2Q9BTF0 503 aaKnown RBP28.1■■■□□ 2.09
CAPN1-220ENST00000530567 RREB1Q92766 1687 aa28.09■■■□□ 2.09
CAPN1-220ENST00000530567 ATG3Q9NT62 314 aa28.09■■■□□ 2.09
CAPN1-220ENST00000530567 ASAP1Q9ULH1 1129 aa28.09■■■□□ 2.09
CAPN1-220ENST00000530567 SENP3-EIF4A1A0A087X0R7 540 aa28.07■■■□□ 2.08
CAPN1-220ENST00000530567 LMOD3Q0VAK6 560 aa28.07■■■□□ 2.08
CAPN1-220ENST00000530567 TEFQ10587 303 aa28.07■■■□□ 2.08
CAPN1-220ENST00000530567 EZH2Q15910 746 aaKnown RBP28.07■■■□□ 2.08
CAPN1-220ENST00000530567 PALLDQ8WX93 1383 aa28.07■■■□□ 2.08
CAPN1-220ENST00000530567 PROM2Q8N271 834 aa28.06■■■□□ 2.08
CAPN1-220ENST00000530567 SMARCC1Q92922 1105 aaPredicted RBP28.03■■■□□ 2.08
CAPN1-220ENST00000530567 UBR2Q8IWV8 1755 aa28.03■■■□□ 2.08
CAPN1-220ENST00000530567 NUP188Q5SRE5 1749 aa28.03■■■□□ 2.08
CAPN1-220ENST00000530567 KCPQ6ZWJ8 1503 aa28.01■■■□□ 2.08
CAPN1-220ENST00000530567 SLC39A6Q13433 755 aa28.01■■■□□ 2.08
CAPN1-220ENST00000530567 TXNRD1Q16881 649 aa28.01■■■□□ 2.08
CAPN1-220ENST00000530567 NCBP3Q53F19 620 aaKnown RBP28.01■■■□□ 2.07
CAPN1-220ENST00000530567 CCDC27Q2M243 656 aa28■■■□□ 2.07
CAPN1-220ENST00000530567 KDM3BQ7LBC6 1761 aa27.99■■■□□ 2.07
CAPN1-220ENST00000530567 TAF7Q15545 349 aaPredicted RBP27.99■■■□□ 2.07
CAPN1-220ENST00000530567 LRRC4BQ9NT99 713 aa27.99■■■□□ 2.07
CAPN1-220ENST00000530567 ZNF831Q5JPB2 1677 aa27.97■■■□□ 2.07
CAPN1-220ENST00000530567 BTBD11A6QL63 1104 aa27.97■■■□□ 2.07
CAPN1-220ENST00000530567 SLC4A9Q96Q91 983 aa27.97■■■□□ 2.07
CAPN1-220ENST00000530567 LOC102724428A0A0B4J2F2 783 aa27.96■■■□□ 2.07
CAPN1-220ENST00000530567 KCNQ3O43525 872 aa27.96■■■□□ 2.07
CAPN1-220ENST00000530567 KCNQ4P56696 695 aa27.96■■■□□ 2.07
CAPN1-220ENST00000530567 SIK1P57059 783 aa27.96■■■□□ 2.07
CAPN1-220ENST00000530567 SLC27A3Q5K4L6 730 aa27.96■■■□□ 2.07
CAPN1-220ENST00000530567 ZNF790Q6PG37 636 aa27.96■■■□□ 2.07
CAPN1-220ENST00000530567 CICQ96RK0 1608 aaPredicted RBP27.95■■■□□ 2.07
CAPN1-220ENST00000530567 WWC1Q8IX03 1113 aa27.95■■■□□ 2.07
CAPN1-220ENST00000530567 CCNL1Q9UK58 526 aaPredicted RBP27.95■■■□□ 2.07
CAPN1-220ENST00000530567 MIS18AQ9NYP9 233 aa27.94■■■□□ 2.06
CAPN1-220ENST00000530567 TAF1LQ8IZX4 1826 aa27.94■■■□□ 2.06
CAPN1-220ENST00000530567 PTCD1O75127 700 aaKnown RBP27.93■■■□□ 2.06
CAPN1-220ENST00000530567 SALL2Q9Y467 1007 aaPredicted RBP27.93■■■□□ 2.06
CAPN1-220ENST00000530567 TJP1Q07157 1748 aa27.93■■■□□ 2.06
CAPN1-220ENST00000530567 NGEFQ8N5V2 710 aa27.92■■■□□ 2.06
CAPN1-220ENST00000530567 C5P01031 1676 aa27.92■■■□□ 2.06
CAPN1-220ENST00000530567 ITPK1Q13572 414 aa27.92■■■□□ 2.06
CAPN1-220ENST00000530567 ZNF496Q96IT1 587 aaPredicted RBP27.92■■■□□ 2.06
CAPN1-220ENST00000530567 RBM42Q9BTD8 480 aaKnown RBP27.92■■■□□ 2.06
CAPN1-220ENST00000530567 TTC5Q8N0Z6 440 aa27.91■■■□□ 2.06
CAPN1-220ENST00000530567 BABAM1Q9NWV8 329 aa27.9■■■□□ 2.06
CAPN1-220ENST00000530567 ZNF521Q96K83 1311 aa27.9■■■□□ 2.06
CAPN1-220ENST00000530567 COL5A3P25940 1745 aaPredicted RBP27.89■■■□□ 2.06
CAPN1-220ENST00000530567 CHL1O00533 1208 aa27.89■■■□□ 2.06
CAPN1-220ENST00000530567 ZNF853P0CG23 659 aa27.89■■■□□ 2.06
CAPN1-220ENST00000530567 ATP6V1AP38606 617 aa27.88■■■□□ 2.05
CAPN1-220ENST00000530567 ANO8Q9HCE9 1232 aaPredicted RBP27.88■■■□□ 2.05
CAPN1-220ENST00000530567 TSPYL4Q9UJ04 414 aa27.88■■■□□ 2.05
CAPN1-220ENST00000530567 HEG1Q9ULI3 1381 aa27.88■■■□□ 2.05
CAPN1-220ENST00000530567 CALD1Q05682 793 aaKnown RBP27.87■■■□□ 2.05
CAPN1-220ENST00000530567 CFAP44Q96MT7 982 aa27.87■■■□□ 2.05
CAPN1-220ENST00000530567 LINC00116Q8NCU8 138 aa27.86■■■□□ 2.05
CAPN1-220ENST00000530567 IFT57Q9NWB7 429 aa27.86■■■□□ 2.05
CAPN1-220ENST00000530567 C4BP0C0L5 1744 aa27.86■■■□□ 2.05
CAPN1-220ENST00000530567 FMNL2Q96PY5 1086 aa27.85■■■□□ 2.05
CAPN1-220ENST00000530567 EIF4A1P60842 406 aaKnown RBP27.84■■■□□ 2.05
CAPN1-220ENST00000530567 VSIG10Q8N0Z9 540 aa27.84■■■□□ 2.05
CAPN1-220ENST00000530567 LAS1LQ9Y4W2 734 aaKnown RBP27.84■■■□□ 2.05
CAPN1-220ENST00000530567 IL16Q14005 1332 aa27.84■■■□□ 2.05
CAPN1-220ENST00000530567 WDR63Q8IWG1 891 aa27.84■■■□□ 2.05
CAPN1-220ENST00000530567 DNAJC10Q8IXB1 793 aa27.84■■■□□ 2.05
CAPN1-220ENST00000530567 MBIPQ9NS73 344 aa27.84■■■□□ 2.05
CAPN1-220ENST00000530567 ZNF827Q17R98 1081 aa27.83■■■□□ 2.05
CAPN1-220ENST00000530567 AKT1S1Q96B36 256 aa27.83■■■□□ 2.05
CAPN1-220ENST00000530567 GNAI1P63096 354 aa27.82■■■□□ 2.04
CAPN1-220ENST00000530567 TUBGCP6Q96RT7 1819 aa27.81■■■□□ 2.04
CAPN1-220ENST00000530567 MYH14Q7Z406 1995 aaKnown RBP27.81■■■□□ 2.04
CAPN1-220ENST00000530567 PRAMEF22A3QJZ6 481 aa27.8■■■□□ 2.04
CAPN1-220ENST00000530567 SPINK5Q9NQ38 1064 aaPredicted RBP27.8■■■□□ 2.04
CAPN1-220ENST00000530567 LAMB4A4D0S4 1761 aa27.79■■■□□ 2.04
CAPN1-220ENST00000530567 CNTNAP4Q9C0A0 1308 aa27.78■■■□□ 2.04
CAPN1-220ENST00000530567 SNRPA1P09661 255 aaKnown RBP27.77■■■□□ 2.04
CAPN1-220ENST00000530567 CYP19A1P11511 503 aaPredicted RBP27.77■■■□□ 2.04
CAPN1-220ENST00000530567 SLC15A2Q16348 729 aa27.77■■■□□ 2.04
CAPN1-220ENST00000530567 KRT24Q2M2I5 525 aa27.77■■■□□ 2.04
CAPN1-220ENST00000530567 UBR3Q6ZT12 1888 aa27.77■■■□□ 2.04
CAPN1-220ENST00000530567 GIGYF1O75420 1035 aaPredicted RBP27.76■■■□□ 2.04
CAPN1-220ENST00000530567 HNRNPUQ00839 825 aaKnown RBP eCLIP27.76■■■□□ 2.04
CAPN1-220ENST00000530567 NBPF14Q5TI25 921 aa27.76■■■□□ 2.04
CAPN1-220ENST00000530567 TSR2Q969E8 191 aaKnown RBP27.76■■■□□ 2.04
CAPN1-220ENST00000530567 STK32BQ9NY57 414 aa27.76■■■□□ 2.04
CAPN1-220ENST00000530567 QSER1Q2KHR3 1735 aa27.76■■■□□ 2.03
CAPN1-220ENST00000530567 CRKLP46109 303 aaKnown RBP27.75■■■□□ 2.03
CAPN1-220ENST00000530567 RC3H1Q5TC82 1133 aaKnown RBP27.75■■■□□ 2.03
CAPN1-220ENST00000530567 AMIGO3Q86WK7 504 aa27.75■■■□□ 2.03
CAPN1-220ENST00000530567 USP16Q9Y5T5 823 aa27.75■■■□□ 2.03
CAPN1-220ENST00000530567 FANCIQ9NVI1 1328 aa27.74■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms