RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 ZNF830Q96NB3 372 aaPredicted RBP17.32■□□□□ 0.36
USP48-213ENST00000529637 RIMBP3CA6NJZ7 1639 aa17.32■□□□□ 0.36
USP48-213ENST00000529637 RIMBP3BA6NNM3 1639 aa17.32■□□□□ 0.36
USP48-213ENST00000529637 RIMBP3Q9UFD9 1639 aa17.32■□□□□ 0.36
USP48-213ENST00000529637 CHL1O00533 1208 aa17.32■□□□□ 0.36
USP48-213ENST00000529637 DCTPP1Q9H773 170 aa17.31■□□□□ 0.36
USP48-213ENST00000529637 CCDC39Q9UFE4 941 aa17.31■□□□□ 0.36
USP48-213ENST00000529637 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.3■□□□□ 0.36
USP48-213ENST00000529637 INTS3Q68E01 1043 aaKnown RBP17.3■□□□□ 0.36
USP48-213ENST00000529637 SIRT1Q96EB6 747 aa17.3■□□□□ 0.36
USP48-213ENST00000529637 AMOTL2Q9Y2J4 779 aa17.3■□□□□ 0.36
USP48-213ENST00000529637 MAP3K19Q56UN5 1328 aa17.3■□□□□ 0.36
USP48-213ENST00000529637 C17orf53Q8N3J3 647 aaPredicted RBP17.3■□□□□ 0.36
USP48-213ENST00000529637 ANKRD44Q8N8A2 993 aa17.3■□□□□ 0.36
USP48-213ENST00000529637 MSH6P52701 1360 aa17.29■□□□□ 0.36
USP48-213ENST00000529637 MCM5P33992 734 aa17.29■□□□□ 0.36
USP48-213ENST00000529637 MTHFSDQ2M296 383 aaKnown RBP17.29■□□□□ 0.36
USP48-213ENST00000529637 FOXD4L6Q3SYB3 417 aaPredicted RBP17.29■□□□□ 0.36
USP48-213ENST00000529637 CEP85Q6P2H3 762 aa17.29■□□□□ 0.36
USP48-213ENST00000529637 FOXD4L3Q6VB84 417 aaPredicted RBP17.29■□□□□ 0.36
USP48-213ENST00000529637 ZNF710Q8N1W2 664 aa17.29■□□□□ 0.36
USP48-213ENST00000529637 PTMAP06454 111 aaKnown RBP17.28■□□□□ 0.36
USP48-213ENST00000529637 ZSCAN20P17040 1043 aaPredicted RBP17.28■□□□□ 0.36
USP48-213ENST00000529637 NLRP6P59044 892 aa17.28■□□□□ 0.36
USP48-213ENST00000529637 G2E3Q7L622 706 aa17.28■□□□□ 0.36
USP48-213ENST00000529637 CCDC94Q9BW85 323 aaPredicted RBP17.28■□□□□ 0.36
USP48-213ENST00000529637 TTC22Q5TAA0 569 aa17.28■□□□□ 0.36
USP48-213ENST00000529637 CASC1Q6TDU7 716 aa17.28■□□□□ 0.36
USP48-213ENST00000529637 RPAP2Q8IXW5 612 aaPredicted RBP17.28■□□□□ 0.36
USP48-213ENST00000529637 STK31Q9BXU1 1019 aa17.28■□□□□ 0.36
USP48-213ENST00000529637 DLG5Q8TDM6 1919 aa17.28■□□□□ 0.36
USP48-213ENST00000529637 DNTTIP2Q5QJE6 756 aaKnown RBP17.28■□□□□ 0.36
USP48-213ENST00000529637 NRXN3Q9Y4C0 1643 aa17.27■□□□□ 0.36
USP48-213ENST00000529637 MTERF4Q7Z6M4 381 aaKnown RBP17.27■□□□□ 0.36
USP48-213ENST00000529637 PLEKHG3A1L390 1219 aa17.27■□□□□ 0.36
USP48-213ENST00000529637 CWC22Q9HCG8 908 aaKnown RBP17.26■□□□□ 0.35
USP48-213ENST00000529637 SETD1AO15047 1707 aaKnown RBP17.26■□□□□ 0.35
USP48-213ENST00000529637 HMMRO75330 724 aa17.26■□□□□ 0.35
USP48-213ENST00000529637 CBX1P83916 185 aa17.26■□□□□ 0.35
USP48-213ENST00000529637 SDSP20132 328 aa17.26■□□□□ 0.35
USP48-213ENST00000529637 FKBP5Q13451 457 aaPredicted RBP17.26■□□□□ 0.35
USP48-213ENST00000529637 KIAA2012Q0VF49 1180 aa17.25■□□□□ 0.35
USP48-213ENST00000529637 MYRIPQ8NFW9 859 aa17.25■□□□□ 0.35
USP48-213ENST00000529637 GDPD2Q9HCC8 539 aa17.25■□□□□ 0.35
USP48-213ENST00000529637 USP6P35125 1406 aa17.25■□□□□ 0.35
USP48-213ENST00000529637 ST18O60284 1047 aa17.25■□□□□ 0.35
USP48-213ENST00000529637 DMTNQ08495 405 aa17.25■□□□□ 0.35
USP48-213ENST00000529637 EXOC6BQ9Y2D4 811 aa17.25■□□□□ 0.35
USP48-213ENST00000529637 PTPRCP08575 1304 aa17.24■□□□□ 0.35
USP48-213ENST00000529637 REREQ9P2R6 1566 aa17.24■□□□□ 0.35
USP48-213ENST00000529637 EYA1Q99502 592 aa17.24■□□□□ 0.35
USP48-213ENST00000529637 TECPR2O15040 1411 aa17.24■□□□□ 0.35
USP48-213ENST00000529637 TPRNQ4KMQ1 711 aa17.24■□□□□ 0.35
USP48-213ENST00000529637 TSHZ3Q63HK5 1081 aa17.24■□□□□ 0.35
USP48-213ENST00000529637 RTL1A6NKG5 1358 aa17.23■□□□□ 0.35
USP48-213ENST00000529637 NOL8Q76FK4 1167 aaKnown RBP17.23■□□□□ 0.35
USP48-213ENST00000529637 ITSN1Q15811 1721 aa17.23■□□□□ 0.35
USP48-213ENST00000529637 ADAMTS13Q76LX8 1427 aa17.23■□□□□ 0.35
USP48-213ENST00000529637 TTC12Q9H892 705 aaPredicted RBP17.23■□□□□ 0.35
USP48-213ENST00000529637 ATP2B3Q16720 1220 aa17.23■□□□□ 0.35
USP48-213ENST00000529637 GADD45BO75293 160 aaPredicted RBP17.22■□□□□ 0.35
USP48-213ENST00000529637 TSPY26PQ9H489 355 aa17.22■□□□□ 0.35
USP48-213ENST00000529637 KIAA0232Q92628 1395 aa17.21■□□□□ 0.35
USP48-213ENST00000529637 OVOS2A0A0J9YW53 1432 aa17.21■□□□□ 0.35
USP48-213ENST00000529637 OVOS2Q6IE36 1432 aa17.21■□□□□ 0.35
USP48-213ENST00000529637 MON2Q7Z3U7 1717 aa17.21■□□□□ 0.35
USP48-213ENST00000529637 TMX3Q96JJ7 454 aa17.21■□□□□ 0.34
USP48-213ENST00000529637 NEK4P51957 841 aa17.2■□□□□ 0.34
USP48-213ENST00000529637 USHBP1Q8N6Y0 703 aa17.2■□□□□ 0.34
USP48-213ENST00000529637 FLT4P35916 1363 aa17.2■□□□□ 0.34
USP48-213ENST00000529637 KIF24Q5T7B8 1368 aa17.2■□□□□ 0.34
USP48-213ENST00000529637 GNAI2P04899 355 aa17.2■□□□□ 0.34
USP48-213ENST00000529637 CCT4P50991 539 aaKnown RBP17.2■□□□□ 0.34
USP48-213ENST00000529637 ABTB2Q8N961 1025 aa17.2■□□□□ 0.34
USP48-213ENST00000529637 USP25Q9UHP3 1055 aa17.2■□□□□ 0.34
USP48-213ENST00000529637 KNDC1Q76NI1 1749 aa17.19■□□□□ 0.34
USP48-213ENST00000529637 NOLC1Q14978 699 aaKnown RBP eCLIP17.19■□□□□ 0.34
USP48-213ENST00000529637 ATP10DQ9P241 1426 aa17.19■□□□□ 0.34
USP48-213ENST00000529637 PPP4R3BQ5MIZ7 849 aa17.19■□□□□ 0.34
USP48-213ENST00000529637 RBM33Q96EV2 1170 aaKnown RBP17.19■□□□□ 0.34
USP48-213ENST00000529637 C3P01024 1663 aa17.19■□□□□ 0.34
USP48-213ENST00000529637 TRIM6-TRIM34B2RNG4 842 aa17.19■□□□□ 0.34
USP48-213ENST00000529637 TTC21AQ8NDW8 1320 aa17.18■□□□□ 0.34
USP48-213ENST00000529637 PLEKHG1Q9ULL1 1385 aa17.18■□□□□ 0.34
USP48-213ENST00000529637 SPDYE4A6NLX3 237 aa17.18■□□□□ 0.34
USP48-213ENST00000529637 REC8O95072 547 aa17.18■□□□□ 0.34
USP48-213ENST00000529637 MBD3O95983 291 aa17.18■□□□□ 0.34
USP48-213ENST00000529637 RILPL2Q969X0 211 aa17.18■□□□□ 0.34
USP48-213ENST00000529637 FLIIQ13045 1269 aa17.18■□□□□ 0.34
USP48-213ENST00000529637 UTP14CQ5TAP6 766 aaKnown RBP17.18■□□□□ 0.34
USP48-213ENST00000529637 RGS12O14924 1447 aa17.18■□□□□ 0.34
USP48-213ENST00000529637 BRD1O95696 1058 aa17.17■□□□□ 0.34
USP48-213ENST00000529637 CCDC30Q5VVM6 783 aa17.17■□□□□ 0.34
USP48-213ENST00000529637 PIBF1Q8WXW3 757 aa17.17■□□□□ 0.34
USP48-213ENST00000529637 GNAT3A8MTJ3 354 aa17.17■□□□□ 0.34
USP48-213ENST00000529637 SBNO1A3KN83 1393 aa17.17■□□□□ 0.34
USP48-213ENST00000529637 CRB1P82279 1406 aa17.17■□□□□ 0.34
USP48-213ENST00000529637 IGSF3O75054 1194 aa17.17■□□□□ 0.34
USP48-213ENST00000529637 EIF2S2P20042 333 aaKnown RBP17.17■□□□□ 0.34
USP48-213ENST00000529637 PTPRUQ92729 1446 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms