RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	RIPK4	P57078	832 aa		27.34	■■□□□ 1.97
CD44-222	ENST00000526025	FAM9B	Q8IZU0	186 aa		27.34	■■□□□ 1.97
CD44-222	ENST00000526025	SMARCC1	Q92922	1105 aa	Predicted RBP	27.33	■■□□□ 1.97
CD44-222	ENST00000526025	ZNF831	Q5JPB2	1677 aa		27.33	■■□□□ 1.97
CD44-222	ENST00000526025	APAF1	O14727	1248 aa		27.32	■■□□□ 1.96
CD44-222	ENST00000526025	CAMKK2	Q96RR4	588 aa		27.32	■■□□□ 1.96
CD44-222	ENST00000526025	TEF	Q10587	303 aa		27.31	■■□□□ 1.96
CD44-222	ENST00000526025	NFATC2IP	Q8NCF5	419 aa		27.31	■■□□□ 1.96
CD44-222	ENST00000526025	UBR2	Q8IWV8	1755 aa		27.3	■■□□□ 1.96
CD44-222	ENST00000526025	MCM10	Q7L590	875 aa		27.29	■■□□□ 1.96
CD44-222	ENST00000526025	DEFB132	Q7Z7B7	95 aa		27.29	■■□□□ 1.96
CD44-222	ENST00000526025	NGEF	Q8N5V2	710 aa		27.29	■■□□□ 1.96
CD44-222	ENST00000526025	NUP188	Q5SRE5	1749 aa		27.28	■■□□□ 1.96
CD44-222	ENST00000526025	CIC	Q96RK0	1608 aa	Predicted RBP	27.28	■■□□□ 1.96
CD44-222	ENST00000526025	PALLD	Q8WX93	1383 aa		27.28	■■□□□ 1.96
CD44-222	ENST00000526025	EN1	Q05925	392 aa	Predicted RBP	27.27	■■□□□ 1.96
CD44-222	ENST00000526025	TRIM35	Q9UPQ4	493 aa		27.27	■■□□□ 1.96
CD44-222	ENST00000526025	RRP7A	Q9Y3A4	280 aa	Known RBP	27.27	■■□□□ 1.96
CD44-222	ENST00000526025	CCDC27	Q2M243	656 aa		27.26	■■□□□ 1.95
CD44-222	ENST00000526025	ATG3	Q9NT62	314 aa		27.26	■■□□□ 1.95
CD44-222	ENST00000526025	KDM3B	Q7LBC6	1761 aa		27.25	■■□□□ 1.95
CD44-222	ENST00000526025	DCTN1	Q14203	1278 aa		27.25	■■□□□ 1.95
CD44-222	ENST00000526025	SLC27A3	Q5K4L6	730 aa		27.25	■■□□□ 1.95
CD44-222	ENST00000526025	ASAP1	Q9ULH1	1129 aa		27.25	■■□□□ 1.95
CD44-222	ENST00000526025	HMGB2	P26583	209 aa	Known RBP	27.24	■■□□□ 1.95
CD44-222	ENST00000526025	NEUROD2	Q15784	382 aa		27.24	■■□□□ 1.95
CD44-222	ENST00000526025	EZH2	Q15910	746 aa	Known RBP	27.24	■■□□□ 1.95
CD44-222	ENST00000526025	TAF1L	Q8IZX4	1826 aa		27.24	■■□□□ 1.95
CD44-222	ENST00000526025	TAF7	Q15545	349 aa	Predicted RBP	27.22	■■□□□ 1.95
CD44-222	ENST00000526025	TXNRD1	Q16881	649 aa		27.22	■■□□□ 1.95
CD44-222	ENST00000526025	BABAM1	Q9NWV8	329 aa		27.22	■■□□□ 1.95
CD44-222	ENST00000526025	KCP	Q6ZWJ8	1503 aa		27.21	■■□□□ 1.95
CD44-222	ENST00000526025	C5	P01031	1676 aa		27.21	■■□□□ 1.95
CD44-222	ENST00000526025	PROM2	Q8N271	834 aa		27.21	■■□□□ 1.95
CD44-222	ENST00000526025	BTBD11	A6QL63	1104 aa		27.2	■■□□□ 1.94
CD44-222	ENST00000526025	CALD1	Q05682	793 aa	Known RBP	27.2	■■□□□ 1.94
CD44-222	ENST00000526025	THUMPD2	Q9BTF0	503 aa	Known RBP	27.19	■■□□□ 1.94
CD44-222	ENST00000526025	LOC102724428	A0A0B4J2F2	783 aa		27.18	■■□□□ 1.94
CD44-222	ENST00000526025	SIK1	P57059	783 aa		27.18	■■□□□ 1.94
CD44-222	ENST00000526025	ZNF790	Q6PG37	636 aa		27.18	■■□□□ 1.94
CD44-222	ENST00000526025	COL5A3	P25940	1745 aa	Predicted RBP	27.18	■■□□□ 1.94
CD44-222	ENST00000526025	TTC5	Q8N0Z6	440 aa		27.17	■■□□□ 1.94
CD44-222	ENST00000526025	CCNL1	Q9UK58	526 aa	Predicted RBP	27.17	■■□□□ 1.94
CD44-222	ENST00000526025	TJP1	Q07157	1748 aa		27.16	■■□□□ 1.94
CD44-222	ENST00000526025	SLC39A6	Q13433	755 aa		27.15	■■□□□ 1.94
CD44-222	ENST00000526025	WWC1	Q8IX03	1113 aa		27.15	■■□□□ 1.94
CD44-222	ENST00000526025	VSIG10	Q8N0Z9	540 aa		27.15	■■□□□ 1.94
CD44-222	ENST00000526025	LRRC4B	Q9NT99	713 aa		27.15	■■□□□ 1.94
CD44-222	ENST00000526025	IL16	Q14005	1332 aa		27.13	■■□□□ 1.93
CD44-222	ENST00000526025	CFAP44	Q96MT7	982 aa		27.12	■■□□□ 1.93
CD44-222	ENST00000526025	QSER1	Q2KHR3	1735 aa		27.12	■■□□□ 1.93
CD44-222	ENST00000526025	C4B	P0C0L5	1744 aa		27.11	■■□□□ 1.93
CD44-222	ENST00000526025	CHL1	O00533	1208 aa		27.11	■■□□□ 1.93
CD44-222	ENST00000526025	FMNL2	Q96PY5	1086 aa		27.11	■■□□□ 1.93
CD44-222	ENST00000526025	SLC4A9	Q96Q91	983 aa		27.11	■■□□□ 1.93
CD44-222	ENST00000526025	RBM42	Q9BTD8	480 aa	Known RBP	27.11	■■□□□ 1.93
CD44-222	ENST00000526025	IFT57	Q9NWB7	429 aa		27.11	■■□□□ 1.93
CD44-222	ENST00000526025	PTCD1	O75127	700 aa	Known RBP	27.1	■■□□□ 1.93
CD44-222	ENST00000526025	ZNF853	P0CG23	659 aa		27.1	■■□□□ 1.93
CD44-222	ENST00000526025	ATP6V1A	P38606	617 aa		27.1	■■□□□ 1.93
CD44-222	ENST00000526025	WDR63	Q8IWG1	891 aa		27.1	■■□□□ 1.93
CD44-222	ENST00000526025	HEG1	Q9ULI3	1381 aa		27.09	■■□□□ 1.93
CD44-222	ENST00000526025	GNAI1	P63096	354 aa		27.09	■■□□□ 1.93
CD44-222	ENST00000526025	ZNF496	Q96IT1	587 aa	Predicted RBP	27.09	■■□□□ 1.93
CD44-222	ENST00000526025	TSPYL4	Q9UJ04	414 aa		27.09	■■□□□ 1.93
CD44-222	ENST00000526025	LAMB4	A4D0S4	1761 aa		27.09	■■□□□ 1.93
CD44-222	ENST00000526025	NBPF14	Q5TI25	921 aa		27.08	■■□□□ 1.93
CD44-222	ENST00000526025	ZNF521	Q96K83	1311 aa		27.08	■■□□□ 1.93
CD44-222	ENST00000526025	KCNQ3	O43525	872 aa		27.07	■■□□□ 1.92
CD44-222	ENST00000526025	ITPK1	Q13572	414 aa		27.07	■■□□□ 1.92
CD44-222	ENST00000526025	TEX13A	Q9BXU3	409 aa	Predicted RBP	27.06	■■□□□ 1.92
CD44-222	ENST00000526025	MIS18A	Q9NYP9	233 aa		27.06	■■□□□ 1.92
CD44-222	ENST00000526025	TUBGCP6	Q96RT7	1819 aa		27.05	■■□□□ 1.92
CD44-222	ENST00000526025	UBR3	Q6ZT12	1888 aa		27.05	■■□□□ 1.92
CD44-222	ENST00000526025	MYH14	Q7Z406	1995 aa	Known RBP	27.05	■■□□□ 1.92
CD44-222	ENST00000526025	KCNQ4	P56696	695 aa		27.04	■■□□□ 1.92
CD44-222	ENST00000526025	EIF4A1	P60842	406 aa	Known RBP	27.04	■■□□□ 1.92
CD44-222	ENST00000526025	AKT1S1	Q96B36	256 aa		27.04	■■□□□ 1.92
CD44-222	ENST00000526025	CNTNAP4	Q9C0A0	1308 aa		27.04	■■□□□ 1.92
CD44-222	ENST00000526025	RC3H1	Q5TC82	1133 aa	Known RBP	27.03	■■□□□ 1.92
CD44-222	ENST00000526025	LINC00116	Q8NCU8	138 aa		27.03	■■□□□ 1.92
CD44-222	ENST00000526025	STK32B	Q9NY57	414 aa		27.03	■■□□□ 1.92
CD44-222	ENST00000526025	SENP3-EIF4A1	A0A087X0R7	540 aa		27.02	■■□□□ 1.92
CD44-222	ENST00000526025	SNRPA1	P09661	255 aa	Known RBP	27.02	■■□□□ 1.92
CD44-222	ENST00000526025	ANO8	Q9HCE9	1232 aa	Predicted RBP	27.02	■■□□□ 1.92
CD44-222	ENST00000526025	SALL2	Q9Y467	1007 aa	Predicted RBP	27.02	■■□□□ 1.92
CD44-222	ENST00000526025	SLC15A2	Q16348	729 aa		27.01	■■□□□ 1.91
CD44-222	ENST00000526025	DNAJC10	Q8IXB1	793 aa		27.01	■■□□□ 1.91
CD44-222	ENST00000526025	MBIP	Q9NS73	344 aa		27.01	■■□□□ 1.91
CD44-222	ENST00000526025	LAS1L	Q9Y4W2	734 aa	Known RBP	27.01	■■□□□ 1.91
CD44-222	ENST00000526025	STARD3NL	O95772	234 aa		26.99	■■□□□ 1.91
CD44-222	ENST00000526025	CYP19A1	P11511	503 aa	Predicted RBP	26.99	■■□□□ 1.91
CD44-222	ENST00000526025	ZNF827	Q17R98	1081 aa		26.99	■■□□□ 1.91
CD44-222	ENST00000526025	GIGYF1	O75420	1035 aa	Predicted RBP	26.98	■■□□□ 1.91
CD44-222	ENST00000526025	HOXB7	P09629	217 aa		26.97	■■□□□ 1.91
CD44-222	ENST00000526025	AK7	Q96M32	723 aa		26.97	■■□□□ 1.91
CD44-222	ENST00000526025	CRKL	P46109	303 aa	Known RBP	26.96	■■□□□ 1.91
CD44-222	ENST00000526025	CASZ1	Q86V15	1759 aa		26.96	■■□□□ 1.91
CD44-222	ENST00000526025	SOS1	Q07889	1333 aa	Predicted RBP	26.95	■■□□□ 1.91
CD44-222	ENST00000526025	MYH16	Q9H6N6	1097 aa		26.95	■■□□□ 1.9

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