RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 MX1P20591 662 aa12.4□□□□□ -0.43
MCF2-209ENST00000520602 HSPA2P54652 639 aa12.4□□□□□ -0.43
MCF2-209ENST00000520602 IL17REQ8NFR9 667 aa12.4□□□□□ -0.43
MCF2-209ENST00000520602 CPSF1Q10570 1443 aaKnown RBP12.39□□□□□ -0.43
MCF2-209ENST00000520602 SDSP20132 328 aa12.39□□□□□ -0.43
MCF2-209ENST00000520602 PLEKHM2Q8IWE5 1019 aa12.39□□□□□ -0.43
MCF2-209ENST00000520602 DDX17Q92841 729 aaKnown RBP12.39□□□□□ -0.43
MCF2-209ENST00000520602 SPG7Q9UQ90 795 aa12.39□□□□□ -0.43
MCF2-209ENST00000520602 AGLP35573 1532 aa12.39□□□□□ -0.43
MCF2-209ENST00000520602 ABCC4O15439 1325 aa12.39□□□□□ -0.43
MCF2-209ENST00000520602 HTATSF1O43719 755 aaKnown RBP12.39□□□□□ -0.43
MCF2-209ENST00000520602 TRAK2O60296 914 aa12.39□□□□□ -0.43
MCF2-209ENST00000520602 SLC39A6Q13433 755 aa12.39□□□□□ -0.43
MCF2-209ENST00000520602 BRPF3Q9ULD4 1205 aa12.39□□□□□ -0.43
MCF2-209ENST00000520602 PIK3R4Q99570 1358 aa12.39□□□□□ -0.43
MCF2-209ENST00000520602 CABP4P57796 275 aa12.39□□□□□ -0.43
MCF2-209ENST00000520602 SYTL4Q96C24 671 aaPredicted RBP12.39□□□□□ -0.43
MCF2-209ENST00000520602 MAP3K5Q99683 1374 aa12.39□□□□□ -0.43
MCF2-209ENST00000520602 CDK12Q9NYV4 1490 aaPredicted RBP12.38□□□□□ -0.43
MCF2-209ENST00000520602 PPP1R42Q7Z4L9 355 aa12.38□□□□□ -0.43
MCF2-209ENST00000520602 RICTORQ6R327 1708 aa12.38□□□□□ -0.43
MCF2-209ENST00000520602 MCM4P33991 863 aa12.38□□□□□ -0.43
MCF2-209ENST00000520602 DBF4Q9UBU7 674 aaPredicted RBP12.38□□□□□ -0.43
MCF2-209ENST00000520602 SIGLEC1Q9BZZ2 1709 aa12.38□□□□□ -0.43
MCF2-209ENST00000520602 GORABQ5T7V8 394 aa12.38□□□□□ -0.43
MCF2-209ENST00000520602 MED14O60244 1454 aa12.37□□□□□ -0.43
MCF2-209ENST00000520602 CD163L1Q9NR16 1453 aa12.37□□□□□ -0.43
MCF2-209ENST00000520602 TAF7LQ5H9L4 462 aa12.37□□□□□ -0.43
MCF2-209ENST00000520602 LRRC7Q96NW7 1537 aa12.37□□□□□ -0.43
MCF2-209ENST00000520602 ARHGEF28Q8N1W1 1705 aaKnown RBP12.37□□□□□ -0.43
MCF2-209ENST00000520602 C19orf44Q9H6X5 657 aa12.37□□□□□ -0.43
MCF2-209ENST00000520602 MAP3K2Q9Y2U5 619 aa12.37□□□□□ -0.43
MCF2-209ENST00000520602 IQSEC2Q5JU85 1478 aa12.37□□□□□ -0.43
MCF2-209ENST00000520602 MCTP1Q6DN14 999 aa12.36□□□□□ -0.43
MCF2-209ENST00000520602 SIRT2Q8IXJ6 389 aa12.36□□□□□ -0.43
MCF2-209ENST00000520602 CPS1P31327 1500 aa12.36□□□□□ -0.43
MCF2-209ENST00000520602 CNTROBQ8N137 903 aa12.36□□□□□ -0.43
MCF2-209ENST00000520602 ARHGEF10O15013 1369 aa12.36□□□□□ -0.43
MCF2-209ENST00000520602 PIP4K2AP48426 406 aaPredicted RBP12.36□□□□□ -0.43
MCF2-209ENST00000520602 PDE1AP54750 535 aa12.36□□□□□ -0.43
MCF2-209ENST00000520602 AKAP4Q5JQC9 854 aa12.36□□□□□ -0.43
MCF2-209ENST00000520602 RUFY2Q8WXA3 655 aa12.36□□□□□ -0.43
MCF2-209ENST00000520602 KCNQ3O43525 872 aa12.35□□□□□ -0.43
MCF2-209ENST00000520602 PTCD1O75127 700 aaKnown RBP12.35□□□□□ -0.43
MCF2-209ENST00000520602 IL27Q8NEV9 243 aa12.35□□□□□ -0.43
MCF2-209ENST00000520602 JARID2Q92833 1246 aaPredicted RBP12.35□□□□□ -0.43
MCF2-209ENST00000520602 ADAMTS13Q76LX8 1427 aa12.35□□□□□ -0.43
MCF2-209ENST00000520602 PLCB2Q00722 1185 aa12.35□□□□□ -0.43
MCF2-209ENST00000520602 USP19O94966 1318 aa12.35□□□□□ -0.43
MCF2-209ENST00000520602 BRPF1P55201 1214 aaPredicted RBP12.35□□□□□ -0.43
MCF2-209ENST00000520602 CWC27Q6UX04 472 aaKnown RBP12.35□□□□□ -0.43
MCF2-209ENST00000520602 UPF3BQ9BZI7 483 aaKnown RBP12.35□□□□□ -0.43
MCF2-209ENST00000520602 IGSF1Q8N6C5 1336 aa12.35□□□□□ -0.43
MCF2-209ENST00000520602 AACSQ86V21 672 aa12.34□□□□□ -0.43
MCF2-209ENST00000520602 NEUROD6Q96NK8 337 aa12.34□□□□□ -0.43
MCF2-209ENST00000520602 MYO3AQ8NEV4 1616 aa12.34□□□□□ -0.43
MCF2-209ENST00000520602 ATP8B2P98198 1209 aa12.34□□□□□ -0.43
MCF2-209ENST00000520602 KIF1BPQ96EK5 621 aa12.34□□□□□ -0.43
MCF2-209ENST00000520602 KIAA0232Q92628 1395 aa12.34□□□□□ -0.43
MCF2-209ENST00000520602 PTMSP20962 102 aa12.34□□□□□ -0.43
MCF2-209ENST00000520602 NUCB2P80303 420 aa12.34□□□□□ -0.43
MCF2-209ENST00000520602 PNMA6EA0A0J9YXQ4 647 aa12.33□□□□□ -0.43
MCF2-209ENST00000520602 MYO5BQ9ULV0 1848 aa12.33□□□□□ -0.44
MCF2-209ENST00000520602 CADPS2Q86UW7 1296 aa12.33□□□□□ -0.44
MCF2-209ENST00000520602 NFATC2IPQ8NCF5 419 aa12.33□□□□□ -0.44
MCF2-209ENST00000520602 DLC1Q96QB1 1528 aa12.32□□□□□ -0.44
MCF2-209ENST00000520602 ZKSCAN1P17029 563 aaPredicted RBP12.32□□□□□ -0.44
MCF2-209ENST00000520602 MYD88Q99836 296 aa12.32□□□□□ -0.44
MCF2-209ENST00000520602 FSD1Q9BTV5 496 aa12.32□□□□□ -0.44
MCF2-209ENST00000520602 SPATA31D1Q6ZQQ2 1576 aa12.32□□□□□ -0.44
MCF2-209ENST00000520602 RNMTO43148 476 aaKnown RBP12.32□□□□□ -0.44
MCF2-209ENST00000520602 CWF19L2Q2TBE0 894 aaKnown RBP12.32□□□□□ -0.44
MCF2-209ENST00000520602 PTMAP06454 111 aaKnown RBP12.31□□□□□ -0.44
MCF2-209ENST00000520602 SKOR2Q2VWA4 1001 aaPredicted RBP12.31□□□□□ -0.44
MCF2-209ENST00000520602 RHPN1Q8TCX5 695 aa12.31□□□□□ -0.44
MCF2-209ENST00000520602 CCDC8Q9H0W5 538 aaPredicted RBP12.31□□□□□ -0.44
MCF2-209ENST00000520602 RTL1A6NKG5 1358 aa12.31□□□□□ -0.44
MCF2-209ENST00000520602 GSPT1P15170 499 aaKnown RBP12.31□□□□□ -0.44
MCF2-209ENST00000520602 IFNL2Q8IZJ0 200 aa12.31□□□□□ -0.44
MCF2-209ENST00000520602 TNPO1Q92973 898 aaKnown RBP12.31□□□□□ -0.44
MCF2-209ENST00000520602 HYPKQ9NX55 129 aa12.31□□□□□ -0.44
MCF2-209ENST00000520602 IFT172Q9UG01 1749 aa12.31□□□□□ -0.44
MCF2-209ENST00000520602 ATP5J2-PTCD1G3V325 749 aa12.31□□□□□ -0.44
MCF2-209ENST00000520602 RAB11FIP3O75154 756 aa12.31□□□□□ -0.44
MCF2-209ENST00000520602 HSP90B1P14625 803 aaKnown RBP12.31□□□□□ -0.44
MCF2-209ENST00000520602 PTPRUQ92729 1446 aa12.3□□□□□ -0.44
MCF2-209ENST00000520602 NBPF7P0C2Y1 421 aaPredicted RBP12.3□□□□□ -0.44
MCF2-209ENST00000520602 SSFA2P28290 1259 aa12.3□□□□□ -0.44
MCF2-209ENST00000520602 LARP1Q6PKG0 1096 aaKnown RBP12.3□□□□□ -0.44
MCF2-209ENST00000520602 ERC1Q8IUD2 1116 aa12.3□□□□□ -0.44
MCF2-209ENST00000520602 DNAJC2Q99543 621 aaKnown RBP12.3□□□□□ -0.44
MCF2-209ENST00000520602 PA2G4Q9UQ80 394 aaKnown RBP12.3□□□□□ -0.44
MCF2-209ENST00000520602 GOLGA6L4A6NEF3 574 aa12.3□□□□□ -0.44
MCF2-209ENST00000520602 EIF4A1P60842 406 aaKnown RBP12.3□□□□□ -0.44
MCF2-209ENST00000520602 PRPF40AO75400 957 aaKnown RBP12.29□□□□□ -0.44
MCF2-209ENST00000520602 COPS6Q7L5N1 327 aa12.29□□□□□ -0.44
MCF2-209ENST00000520602 LARP6Q9BRS8 491 aaKnown RBP12.29□□□□□ -0.44
MCF2-209ENST00000520602 RBM25P49756 843 aaKnown RBP12.29□□□□□ -0.44
MCF2-209ENST00000520602 CCDC85AQ96PX6 553 aaPredicted RBP12.29□□□□□ -0.44
MCF2-209ENST00000520602 USP44Q9H0E7 712 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms