RNA–Protein interactions for RNA: ENST00000520233.1

SDC2-205, Transcript of syndecan 2, humanhuman

TSL 4

Gene SDC2, Length 563 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC2-205ENST00000520233 TMOD3Q9NYL9 352 aa23.23■■□□□ 1.31
SDC2-205ENST00000520233 GNAI1P63096 354 aa23.22■■□□□ 1.31
SDC2-205ENST00000520233 SYTL4Q96C24 671 aaPredicted RBP23.22■■□□□ 1.31
SDC2-205ENST00000520233 CFAP44Q96MT7 982 aa23.22■■□□□ 1.31
SDC2-205ENST00000520233 BABAM1Q9NWV8 329 aa23.22■■□□□ 1.31
SDC2-205ENST00000520233 ZNF853P0CG23 659 aa23.21■■□□□ 1.31
SDC2-205ENST00000520233 PIGBQ92521 554 aa23.21■■□□□ 1.31
SDC2-205ENST00000520233 SIPA1L3O60292 1781 aaPredicted RBP23.21■■□□□ 1.31
SDC2-205ENST00000520233 CHL1O00533 1208 aa23.2■■□□□ 1.3
SDC2-205ENST00000520233 KCNQ2O43526 872 aa23.2■■□□□ 1.3
SDC2-205ENST00000520233 ITGB4P16144 1822 aa23.19■■□□□ 1.3
SDC2-205ENST00000520233 BTBD11A6QL63 1104 aa23.19■■□□□ 1.3
SDC2-205ENST00000520233 LAS1LQ9Y4W2 734 aaKnown RBP23.19■■□□□ 1.3
SDC2-205ENST00000520233 NHSQ6T4R5 1651 aa23.19■■□□□ 1.3
SDC2-205ENST00000520233 E9PSI1 815 aa23.18■■□□□ 1.3
SDC2-205ENST00000520233 SLFN5Q08AF3 891 aa23.18■■□□□ 1.3
SDC2-205ENST00000520233 BCL11BQ9C0K0 894 aaPredicted RBP23.18■■□□□ 1.3
SDC2-205ENST00000520233 SPINK5Q9NQ38 1064 aaPredicted RBP23.18■■□□□ 1.3
SDC2-205ENST00000520233 SBF2Q86WG5 1849 aa23.17■■□□□ 1.3
SDC2-205ENST00000520233 MYH16Q9H6N6 1097 aa23.17■■□□□ 1.3
SDC2-205ENST00000520233 MIS18AQ9NYP9 233 aa23.17■■□□□ 1.3
SDC2-205ENST00000520233 TSPYL4Q9UJ04 414 aa23.17■■□□□ 1.3
SDC2-205ENST00000520233 CDCA7LQ96GN5 454 aa23.16■■□□□ 1.3
SDC2-205ENST00000520233 MBIPQ9NS73 344 aa23.16■■□□□ 1.3
SDC2-205ENST00000520233 TRIM37O94972 964 aa23.14■■□□□ 1.29
SDC2-205ENST00000520233 ZNF790Q6PG37 636 aa23.14■■□□□ 1.29
SDC2-205ENST00000520233 PTF1AQ7RTS3 328 aa23.14■■□□□ 1.29
SDC2-205ENST00000520233 TRMT2AQ8IZ69 625 aaKnown RBP23.14■■□□□ 1.29
SDC2-205ENST00000520233 SLC39A6Q13433 755 aa23.13■■□□□ 1.29
SDC2-205ENST00000520233 ATG3Q9NT62 314 aa23.13■■□□□ 1.29
SDC2-205ENST00000520233 FANCIQ9NVI1 1328 aa23.12■■□□□ 1.29
SDC2-205ENST00000520233 PAPPAQ13219 1627 aa23.12■■□□□ 1.29
SDC2-205ENST00000520233 KDM3BQ7LBC6 1761 aa23.12■■□□□ 1.29
SDC2-205ENST00000520233 TTC5Q8N0Z6 440 aa23.12■■□□□ 1.29
SDC2-205ENST00000520233 SMARCC1Q92922 1105 aaPredicted RBP23.12■■□□□ 1.29
SDC2-205ENST00000520233 TSR2Q969E8 191 aaKnown RBP23.12■■□□□ 1.29
SDC2-205ENST00000520233 ASAP1Q9ULH1 1129 aa23.12■■□□□ 1.29
SDC2-205ENST00000520233 KCNQ3O43525 872 aa23.11■■□□□ 1.29
SDC2-205ENST00000520233 DUSP27Q5VZP5 1158 aa23.1■■□□□ 1.29
SDC2-205ENST00000520233 KAT6BQ8WYB5 2073 aa23.1■■□□□ 1.29
SDC2-205ENST00000520233 BTAF1O14981 1849 aa23.1■■□□□ 1.29
SDC2-205ENST00000520233 EIF4A1P60842 406 aaKnown RBP23.09■■□□□ 1.29
SDC2-205ENST00000520233 PALLDQ8WX93 1383 aa23.07■■□□□ 1.28
SDC2-205ENST00000520233 ZNF496Q96IT1 587 aaPredicted RBP23.07■■□□□ 1.28
SDC2-205ENST00000520233 FMNL2Q96PY5 1086 aa23.07■■□□□ 1.28
SDC2-205ENST00000520233 KCPQ6ZWJ8 1503 aa23.07■■□□□ 1.28
SDC2-205ENST00000520233 HEG1Q9ULI3 1381 aa23.06■■□□□ 1.28
SDC2-205ENST00000520233 UBR2Q8IWV8 1755 aa23.06■■□□□ 1.28
SDC2-205ENST00000520233 PTCD1O75127 700 aaKnown RBP23.05■■□□□ 1.28
SDC2-205ENST00000520233 APBA3O96018 575 aa23.04■■□□□ 1.28
SDC2-205ENST00000520233 EXOSC9Q06265 439 aaKnown RBP23.04■■□□□ 1.28
SDC2-205ENST00000520233 RBM42Q9BTD8 480 aaKnown RBP23.04■■□□□ 1.28
SDC2-205ENST00000520233 TNS1Q9HBL0 1735 aaKnown RBP23.03■■□□□ 1.28
SDC2-205ENST00000520233 PLSCR1O15162 318 aa23.03■■□□□ 1.28
SDC2-205ENST00000520233 VSIG10Q8N0Z9 540 aa23.03■■□□□ 1.28
SDC2-205ENST00000520233 KRT24Q2M2I5 525 aa23.02■■□□□ 1.28
SDC2-205ENST00000520233 CCDC125Q86Z20 511 aa23.02■■□□□ 1.28
SDC2-205ENST00000520233 C8orf58Q8NAV2 365 aa23.02■■□□□ 1.28
SDC2-205ENST00000520233 SOS1Q07889 1333 aaPredicted RBP23.02■■□□□ 1.28
SDC2-205ENST00000520233 LOC102724428A0A0B4J2F2 783 aa23.01■■□□□ 1.27
SDC2-205ENST00000520233 GIGYF1O75420 1035 aaPredicted RBP23.01■■□□□ 1.27
SDC2-205ENST00000520233 HOXB7P09629 217 aa23.01■■□□□ 1.27
SDC2-205ENST00000520233 SNRPA1P09661 255 aaKnown RBP23.01■■□□□ 1.27
SDC2-205ENST00000520233 SIK1P57059 783 aa23.01■■□□□ 1.27
SDC2-205ENST00000520233 SF3B2Q13435 895 aaKnown RBP23.01■■□□□ 1.27
SDC2-205ENST00000520233 TSPYL6Q8N831 410 aa23■■□□□ 1.27
SDC2-205ENST00000520233 SLC4A9Q96Q91 983 aa23■■□□□ 1.27
SDC2-205ENST00000520233 ELL2O00472 640 aaPredicted RBP22.99■■□□□ 1.27
SDC2-205ENST00000520233 TWISTNBQ3B726 338 aaPredicted RBP22.99■■□□□ 1.27
SDC2-205ENST00000520233 TEX13AQ9BXU3 409 aaPredicted RBP22.99■■□□□ 1.27
SDC2-205ENST00000520233 CT47B1P0C2W7 299 aaPredicted RBP22.98■■□□□ 1.27
SDC2-205ENST00000520233 ATP6V1AP38606 617 aa22.98■■□□□ 1.27
SDC2-205ENST00000520233 LY75O60449 1722 aa22.98■■□□□ 1.27
SDC2-205ENST00000520233 ZNF831Q5JPB2 1677 aa22.97■■□□□ 1.27
SDC2-205ENST00000520233 VAMP4O75379 141 aa22.97■■□□□ 1.27
SDC2-205ENST00000520233 PRAMEF22A3QJZ6 481 aa22.96■■□□□ 1.27
SDC2-205ENST00000520233 SLC27A3Q5K4L6 730 aa22.96■■□□□ 1.27
SDC2-205ENST00000520233 CCNL1Q9UK58 526 aaPredicted RBP22.96■■□□□ 1.27
SDC2-205ENST00000520233 CICQ96RK0 1608 aaPredicted RBP22.96■■□□□ 1.27
SDC2-205ENST00000520233 RGPD3A6NKT7 1758 aaPredicted RBP22.95■■□□□ 1.26
SDC2-205ENST00000520233 BAG6P46379 1132 aa22.95■■□□□ 1.26
SDC2-205ENST00000520233 RGPD4Q7Z3J3 1758 aa22.95■■□□□ 1.26
SDC2-205ENST00000520233 DNAJC10Q8IXB1 793 aa22.95■■□□□ 1.26
SDC2-205ENST00000520233 CHMP4AQ9BY43 222 aa22.95■■□□□ 1.26
SDC2-205ENST00000520233 USP16Q9Y5T5 823 aa22.95■■□□□ 1.26
SDC2-205ENST00000520233 ITPK1Q13572 414 aa22.94■■□□□ 1.26
SDC2-205ENST00000520233 TXNRD1Q16881 649 aa22.94■■□□□ 1.26
SDC2-205ENST00000520233 UPF1Q92900 1129 aaKnown RBP eCLIP22.94■■□□□ 1.26
SDC2-205ENST00000520233 TJP1Q07157 1748 aa22.94■■□□□ 1.26
SDC2-205ENST00000520233 C5P01031 1676 aa22.93■■□□□ 1.26
SDC2-205ENST00000520233 PROM2Q8N271 834 aa22.93■■□□□ 1.26
SDC2-205ENST00000520233 ZNF428Q96B54 188 aa22.93■■□□□ 1.26
SDC2-205ENST00000520233 CAMKK2Q96RR4 588 aa22.93■■□□□ 1.26
SDC2-205ENST00000520233 STARD3NLO95772 234 aa22.92■■□□□ 1.26
SDC2-205ENST00000520233 HMGB2P26583 209 aaKnown RBP22.92■■□□□ 1.26
SDC2-205ENST00000520233 EN1Q05925 392 aaPredicted RBP22.92■■□□□ 1.26
SDC2-205ENST00000520233 HDGFL1Q5TGJ6 251 aa22.92■■□□□ 1.26
SDC2-205ENST00000520233 LRRC4BQ9NT99 713 aa22.92■■□□□ 1.26
SDC2-205ENST00000520233 LAMB4A4D0S4 1761 aa22.91■■□□□ 1.26
SDC2-205ENST00000520233 CYP19A1P11511 503 aaPredicted RBP22.91■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms