RNA–Protein interactions for RNA: ENST00000517514.1

CLN8-202, Transcript of CLN8, transmembrane ER and ERGIC protein, humanhuman

TSL 4

Gene CLN8, Length 568 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN8-202ENST00000517514 TRIM37O94972 964 aa13□□□□□ -0.33
CLN8-202ENST00000517514 SPINK5Q9NQ38 1064 aaPredicted RBP13□□□□□ -0.33
CLN8-202ENST00000517514 KCPQ6ZWJ8 1503 aa12.99□□□□□ -0.33
CLN8-202ENST00000517514 KCNQ3O43525 872 aa12.99□□□□□ -0.33
CLN8-202ENST00000517514 ZNF853P0CG23 659 aa12.99□□□□□ -0.33
CLN8-202ENST00000517514 HNRNPUQ00839 825 aaKnown RBP eCLIP12.99□□□□□ -0.33
CLN8-202ENST00000517514 LMOD3Q0VAK6 560 aa12.99□□□□□ -0.33
CLN8-202ENST00000517514 RTF1Q92541 710 aaKnown RBP12.99□□□□□ -0.33
CLN8-202ENST00000517514 CABP4P57796 275 aa12.98□□□□□ -0.33
CLN8-202ENST00000517514 NGEFQ8N5V2 710 aa12.98□□□□□ -0.33
CLN8-202ENST00000517514 BCL11BQ9C0K0 894 aaPredicted RBP12.98□□□□□ -0.33
CLN8-202ENST00000517514 ATG3Q9NT62 314 aa12.98□□□□□ -0.33
CLN8-202ENST00000517514 MIS18AQ9NYP9 233 aa12.98□□□□□ -0.33
CLN8-202ENST00000517514 ASAP1Q9ULH1 1129 aa12.98□□□□□ -0.33
CLN8-202ENST00000517514 RGPD3A6NKT7 1758 aaPredicted RBP12.98□□□□□ -0.33
CLN8-202ENST00000517514 RGPD4Q7Z3J3 1758 aa12.98□□□□□ -0.33
CLN8-202ENST00000517514 TJP1Q07157 1748 aa12.97□□□□□ -0.33
CLN8-202ENST00000517514 C5P01031 1676 aa12.97□□□□□ -0.33
CLN8-202ENST00000517514 CHL1O00533 1208 aa12.97□□□□□ -0.33
CLN8-202ENST00000517514 SLC39A6Q13433 755 aa12.97□□□□□ -0.33
CLN8-202ENST00000517514 SYTL4Q96C24 671 aaPredicted RBP12.97□□□□□ -0.33
CLN8-202ENST00000517514 TMOD3Q9NYL9 352 aa12.97□□□□□ -0.33
CLN8-202ENST00000517514 ZNF831Q5JPB2 1677 aa12.96□□□□□ -0.33
CLN8-202ENST00000517514 CICQ96RK0 1608 aaPredicted RBP12.96□□□□□ -0.33
CLN8-202ENST00000517514 TEFQ10587 303 aa12.96□□□□□ -0.33
CLN8-202ENST00000517514 TAF7Q15545 349 aaPredicted RBP12.96□□□□□ -0.33
CLN8-202ENST00000517514 WDR63Q8IWG1 891 aa12.96□□□□□ -0.33
CLN8-202ENST00000517514 SLC4A9Q96Q91 983 aa12.96□□□□□ -0.33
CLN8-202ENST00000517514 TAF1LQ8IZX4 1826 aa12.96□□□□□ -0.33
CLN8-202ENST00000517514 IL16Q14005 1332 aa12.95□□□□□ -0.34
CLN8-202ENST00000517514 CDCA7LQ96GN5 454 aa12.95□□□□□ -0.34
CLN8-202ENST00000517514 RREB1Q92766 1687 aa12.95□□□□□ -0.34
CLN8-202ENST00000517514 HEG1Q9ULI3 1381 aa12.94□□□□□ -0.34
CLN8-202ENST00000517514 ZBED9Q6R2W3 1325 aa12.94□□□□□ -0.34
CLN8-202ENST00000517514 COL5A3P25940 1745 aaPredicted RBP12.94□□□□□ -0.34
CLN8-202ENST00000517514 TRMT2AQ8IZ69 625 aaKnown RBP12.94□□□□□ -0.34
CLN8-202ENST00000517514 PROM2Q8N271 834 aa12.94□□□□□ -0.34
CLN8-202ENST00000517514 UPF1Q92900 1129 aaKnown RBP eCLIP12.94□□□□□ -0.34
CLN8-202ENST00000517514 CFAP44Q96MT7 982 aa12.94□□□□□ -0.34
CLN8-202ENST00000517514 MBIPQ9NS73 344 aa12.94□□□□□ -0.34
CLN8-202ENST00000517514 IFT57Q9NWB7 429 aa12.94□□□□□ -0.34
CLN8-202ENST00000517514 BTBD11A6QL63 1104 aa12.93□□□□□ -0.34
CLN8-202ENST00000517514 SLFN5Q08AF3 891 aa12.93□□□□□ -0.34
CLN8-202ENST00000517514 ZNF790Q6PG37 636 aa12.93□□□□□ -0.34
CLN8-202ENST00000517514 BABAM1Q9NWV8 329 aa12.93□□□□□ -0.34
CLN8-202ENST00000517514 PALLDQ8WX93 1383 aa12.93□□□□□ -0.34
CLN8-202ENST00000517514 EIF4A1P60842 406 aaKnown RBP12.92□□□□□ -0.34
CLN8-202ENST00000517514 KRT24Q2M2I5 525 aa12.92□□□□□ -0.34
CLN8-202ENST00000517514 NUP188Q5SRE5 1749 aa12.92□□□□□ -0.34
CLN8-202ENST00000517514 TSR2Q969E8 191 aaKnown RBP12.92□□□□□ -0.34
CLN8-202ENST00000517514 ZNF496Q96IT1 587 aaPredicted RBP12.92□□□□□ -0.34
CLN8-202ENST00000517514 MYH14Q7Z406 1995 aaKnown RBP12.92□□□□□ -0.34
CLN8-202ENST00000517514 LAMB4A4D0S4 1761 aa12.92□□□□□ -0.34
CLN8-202ENST00000517514 FANCIQ9NVI1 1328 aa12.91□□□□□ -0.34
CLN8-202ENST00000517514 PRAMEF22A3QJZ6 481 aa12.91□□□□□ -0.34
CLN8-202ENST00000517514 PLSCR1O15162 318 aa12.91□□□□□ -0.34
CLN8-202ENST00000517514 APBA3O96018 575 aa12.91□□□□□ -0.34
CLN8-202ENST00000517514 GNAI1P63096 354 aa12.91□□□□□ -0.34
CLN8-202ENST00000517514 GOLGA2Q08379 1002 aa12.91□□□□□ -0.34
CLN8-202ENST00000517514 DEFB132Q7Z7B7 95 aa12.91□□□□□ -0.34
CLN8-202ENST00000517514 YTHDC1Q96MU7 727 aaKnown RBP12.91□□□□□ -0.34
CLN8-202ENST00000517514 CAMKK2Q96RR4 588 aa12.91□□□□□ -0.34
CLN8-202ENST00000517514 LRRC4BQ9NT99 713 aa12.91□□□□□ -0.34
CLN8-202ENST00000517514 TSPYL4Q9UJ04 414 aa12.91□□□□□ -0.34
CLN8-202ENST00000517514 LAS1LQ9Y4W2 734 aaKnown RBP12.91□□□□□ -0.34
CLN8-202ENST00000517514 KCNQ4P56696 695 aa12.9□□□□□ -0.34
CLN8-202ENST00000517514 CALD1Q05682 793 aaKnown RBP12.9□□□□□ -0.34
CLN8-202ENST00000517514 ITPK1Q13572 414 aa12.9□□□□□ -0.34
CLN8-202ENST00000517514 LOC102724428A0A0B4J2F2 783 aa12.89□□□□□ -0.35
CLN8-202ENST00000517514 PTCD1O75127 700 aaKnown RBP12.89□□□□□ -0.35
CLN8-202ENST00000517514 SIK1P57059 783 aa12.89□□□□□ -0.35
CLN8-202ENST00000517514 EN1Q05925 392 aaPredicted RBP12.89□□□□□ -0.35
CLN8-202ENST00000517514 DUSP27Q5VZP5 1158 aa12.89□□□□□ -0.35
CLN8-202ENST00000517514 C8orf58Q8NAV2 365 aa12.89□□□□□ -0.35
CLN8-202ENST00000517514 SMARCC1Q92922 1105 aaPredicted RBP12.89□□□□□ -0.35
CLN8-202ENST00000517514 TUBGCP6Q96RT7 1819 aa12.89□□□□□ -0.35
CLN8-202ENST00000517514 EZH2Q15910 746 aaKnown RBP12.88□□□□□ -0.35
CLN8-202ENST00000517514 TXNRD1Q16881 649 aa12.88□□□□□ -0.35
CLN8-202ENST00000517514 CCDC125Q86Z20 511 aa12.88□□□□□ -0.35
CLN8-202ENST00000517514 TSPYL6Q8N831 410 aa12.88□□□□□ -0.35
CLN8-202ENST00000517514 E9PSI1 815 aa12.87□□□□□ -0.35
CLN8-202ENST00000517514 GIGYF1O75420 1035 aaPredicted RBP12.87□□□□□ -0.35
CLN8-202ENST00000517514 EXOSC9Q06265 439 aaKnown RBP12.87□□□□□ -0.35
CLN8-202ENST00000517514 DNAJC10Q8IXB1 793 aa12.87□□□□□ -0.35
CLN8-202ENST00000517514 C4BP0C0L5 1744 aa12.87□□□□□ -0.35
CLN8-202ENST00000517514 TTC5Q8N0Z6 440 aa12.86□□□□□ -0.35
CLN8-202ENST00000517514 VSIG10Q8N0Z9 540 aa12.86□□□□□ -0.35
CLN8-202ENST00000517514 LINC00116Q8NCU8 138 aa12.86□□□□□ -0.35
CLN8-202ENST00000517514 FMNL2Q96PY5 1086 aa12.86□□□□□ -0.35
CLN8-202ENST00000517514 RBM42Q9BTD8 480 aaKnown RBP12.86□□□□□ -0.35
CLN8-202ENST00000517514 USP16Q9Y5T5 823 aa12.86□□□□□ -0.35
CLN8-202ENST00000517514 UBR3Q6ZT12 1888 aa12.86□□□□□ -0.35
CLN8-202ENST00000517514 MYH16Q9H6N6 1097 aa12.85□□□□□ -0.35
CLN8-202ENST00000517514 ELL2O00472 640 aaPredicted RBP12.84□□□□□ -0.35
CLN8-202ENST00000517514 CYP19A1P11511 503 aaPredicted RBP12.84□□□□□ -0.35
CLN8-202ENST00000517514 ATP6V1AP38606 617 aa12.84□□□□□ -0.35
CLN8-202ENST00000517514 BAG6P46379 1132 aa12.84□□□□□ -0.35
CLN8-202ENST00000517514 AMIGO3Q86WK7 504 aa12.84□□□□□ -0.35
CLN8-202ENST00000517514 CCNL1Q9UK58 526 aaPredicted RBP12.84□□□□□ -0.35
CLN8-202ENST00000517514 VAMP4O75379 141 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms