RNA–Protein interactions for RNA: ENST00000515063.1

CAST-242, Transcript of calpastatin, humanhuman

TSL 1 (best)

Gene CAST, Length 654 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAST-242ENST00000515063 ADAMTS19Q8TE59 1207 aa7.03□□□□□ -1.28
CAST-242ENST00000515063 RHBDD1Q8TEB9 315 aa7.03□□□□□ -1.28
CAST-242ENST00000515063 CALR3Q96L12 384 aaKnown RBP7.03□□□□□ -1.28
CAST-242ENST00000515063 HRH3Q9Y5N1 445 aa7.03□□□□□ -1.28
CAST-242ENST00000515063 A0A1B0GTH6 734 aa7.02□□□□□ -1.29
CAST-242ENST00000515063 USP17L3A6NCW0 530 aa7.02□□□□□ -1.29
CAST-242ENST00000515063 USP17L4A6NCW7 530 aa7.02□□□□□ -1.29
CAST-242ENST00000515063 SCNN1DP51172 638 aa7.02□□□□□ -1.29
CAST-242ENST00000515063 USP17L2Q6R6M4 530 aa7.02□□□□□ -1.29
CAST-242ENST00000515063 RIPOR1Q6ZS17 1223 aa7.02□□□□□ -1.29
CAST-242ENST00000515063 USP17L1Q7RTZ2 530 aa7.02□□□□□ -1.29
CAST-242ENST00000515063 FHDC1Q9C0D6 1143 aaPredicted RBP7.02□□□□□ -1.29
CAST-242ENST00000515063 STK17AQ9UEE5 414 aa7.02□□□□□ -1.29
CAST-242ENST00000515063 RBM19Q9Y4C8 960 aaKnown RBP7.02□□□□□ -1.29
CAST-242ENST00000515063 F11P03951 625 aa7.01□□□□□ -1.29
CAST-242ENST00000515063 PPARGC1BQ86YN6 1023 aaKnown RBP7.01□□□□□ -1.29
CAST-242ENST00000515063 TRIM22Q8IYM9 498 aa7.01□□□□□ -1.29
CAST-242ENST00000515063 DEPDC4Q8N2C3 294 aa7.01□□□□□ -1.29
CAST-242ENST00000515063 VWA5B2Q8N398 1253 aa7.01□□□□□ -1.29
CAST-242ENST00000515063 UCN2Q96RP3 112 aa7.01□□□□□ -1.29
CAST-242ENST00000515063 GAS2L1Q99501 681 aaPredicted RBP7.01□□□□□ -1.29
CAST-242ENST00000515063 PCDHGA11Q9Y5H2 935 aa7.01□□□□□ -1.29
CAST-242ENST00000515063 CSB-PGBD3P0DP91 1061 aa7□□□□□ -1.29
CAST-242ENST00000515063 SMTNP53814 917 aa7□□□□□ -1.29
CAST-242ENST00000515063 TBC1D9Q6ZT07 1266 aa7□□□□□ -1.29
CAST-242ENST00000515063 PGBD3Q8N328 593 aa7□□□□□ -1.29
CAST-242ENST00000515063 ZSCAN1Q8NBB4 408 aa7□□□□□ -1.29
CAST-242ENST00000515063 TRERF1Q96PN7 1200 aa7□□□□□ -1.29
CAST-242ENST00000515063 NIFKQ9BYG3 293 aaKnown RBP7□□□□□ -1.29
CAST-242ENST00000515063 LBRQ14739 615 aaKnown RBP6.99□□□□□ -1.29
CAST-242ENST00000515063 SLC4A9Q96Q91 983 aa6.99□□□□□ -1.29
CAST-242ENST00000515063 A6NJY4 79 aa6.98□□□□□ -1.29
CAST-242ENST00000515063 TMEM229AB2RXF0 380 aa6.98□□□□□ -1.29
CAST-242ENST00000515063 NBPF1Q3BBV0 1214 aa6.98□□□□□ -1.29
CAST-242ENST00000515063 C4orf17Q53FE4 359 aa6.98□□□□□ -1.29
CAST-242ENST00000515063 LARGE2Q8N3Y3 721 aa6.98□□□□□ -1.29
CAST-242ENST00000515063 C1orf216Q8TAB5 229 aa6.98□□□□□ -1.29
CAST-242ENST00000515063 ZNF837Q96EG3 531 aaPredicted RBP6.98□□□□□ -1.29
CAST-242ENST00000515063 COL25A1Q9BXS0 654 aaPredicted RBP6.98□□□□□ -1.29
CAST-242ENST00000515063 DNAAF2Q9NVR5 837 aaKnown RBP6.98□□□□□ -1.29
CAST-242ENST00000515063 SERTAD1Q9UHV2 236 aa6.98□□□□□ -1.29
CAST-242ENST00000515063 PALM3A6NDB9 673 aaPredicted RBP6.97□□□□□ -1.29
CAST-242ENST00000515063 CDK2AP1O14519 115 aa6.97□□□□□ -1.29
CAST-242ENST00000515063 STAU1O95793 577 aaKnown RBP6.97□□□□□ -1.29
CAST-242ENST00000515063 PHKA2P46019 1235 aa6.97□□□□□ -1.29
CAST-242ENST00000515063 MTFR1Q15390 333 aa6.97□□□□□ -1.29
CAST-242ENST00000515063 EFHC2Q5JST6 749 aa6.97□□□□□ -1.29
CAST-242ENST00000515063 NUCKS1Q9H1E3 243 aaKnown RBP6.97□□□□□ -1.29
CAST-242ENST00000515063 MKRN1Q9UHC7 482 aaKnown RBP6.97□□□□□ -1.29
CAST-242ENST00000515063 MAFBQ9Y5Q3 323 aaPredicted RBP6.97□□□□□ -1.29
CAST-242ENST00000515063 PLA2G4AP47712 749 aa6.96□□□□□ -1.3
CAST-242ENST00000515063 OGFOD1Q8N543 542 aa6.96□□□□□ -1.3
CAST-242ENST00000515063 GPR161Q8N6U8 529 aaKnown RBP6.96□□□□□ -1.3
CAST-242ENST00000515063 TPCN2Q8NHX9 752 aa6.96□□□□□ -1.3
CAST-242ENST00000515063 CNTNAP3BQ96NU0 1288 aa6.96□□□□□ -1.3
CAST-242ENST00000515063 CNTNAP3Q9BZ76 1288 aa6.96□□□□□ -1.3
CAST-242ENST00000515063 PPP1R12CQ9BZL4 782 aa6.96□□□□□ -1.3
CAST-242ENST00000515063 ZNF358Q9NW07 568 aa6.96□□□□□ -1.3
CAST-242ENST00000515063 TFIP11Q9UBB9 837 aaKnown RBP6.96□□□□□ -1.3
CAST-242ENST00000515063 PHF24Q9UPV7 400 aa6.96□□□□□ -1.3
CAST-242ENST00000515063 TATP17735 454 aaPredicted RBP6.95□□□□□ -1.3
CAST-242ENST00000515063 DBN1Q16643 649 aa6.95□□□□□ -1.3
CAST-242ENST00000515063 CCDC102BQ68D86 513 aa6.95□□□□□ -1.3
CAST-242ENST00000515063 LARP1Q6PKG0 1096 aaKnown RBP6.95□□□□□ -1.3
CAST-242ENST00000515063 GPAMQ9HCL2 828 aa6.95□□□□□ -1.3
CAST-242ENST00000515063 CUEDC1Q9NWM3 386 aaPredicted RBP6.95□□□□□ -1.3
CAST-242ENST00000515063 NSFL1CQ9UNZ2 370 aaKnown RBP6.95□□□□□ -1.3
CAST-242ENST00000515063 CHMP3Q9Y3E7 222 aa6.95□□□□□ -1.3
CAST-242ENST00000515063 GTF3C3Q9Y5Q9 886 aa6.95□□□□□ -1.3
CAST-242ENST00000515063 M0R2N6 131 aa6.94□□□□□ -1.3
CAST-242ENST00000515063 RASA1P20936 1047 aa6.94□□□□□ -1.3
CAST-242ENST00000515063 MSX1P28360 303 aa6.94□□□□□ -1.3
CAST-242ENST00000515063 FIGNL1Q6PIW4 674 aa6.94□□□□□ -1.3
CAST-242ENST00000515063 SIX5Q8N196 739 aa6.94□□□□□ -1.3
CAST-242ENST00000515063 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.94□□□□□ -1.3
CAST-242ENST00000515063 GTPBP3Q969Y2 492 aaKnown RBP6.94□□□□□ -1.3
CAST-242ENST00000515063 ZDHHC3Q9NYG2 299 aa6.94□□□□□ -1.3
CAST-242ENST00000515063 CABP1Q9NZU7 370 aa6.94□□□□□ -1.3
CAST-242ENST00000515063 SCHIP1Q9P0W5 487 aaPredicted RBP6.94□□□□□ -1.3
CAST-242ENST00000515063 CLDN10P78369 228 aa6.93□□□□□ -1.3
CAST-242ENST00000515063 SRSF11Q05519 484 aaKnown RBP6.93□□□□□ -1.3
CAST-242ENST00000515063 AIDAQ96BJ3 306 aa6.93□□□□□ -1.3
CAST-242ENST00000515063 CRISPLD1Q9H336 500 aa6.93□□□□□ -1.3
CAST-242ENST00000515063 MBIPQ9NS73 344 aa6.93□□□□□ -1.3
CAST-242ENST00000515063 ZNF777Q9ULD5 760 aaPredicted RBP6.93□□□□□ -1.3
CAST-242ENST00000515063 IQSEC3Q9UPP2 1182 aaPredicted RBP6.93□□□□□ -1.3
CAST-242ENST00000515063 KRT76Q01546 638 aa6.92□□□□□ -1.3
CAST-242ENST00000515063 RNFT1Q5M7Z0 435 aa6.92□□□□□ -1.3
CAST-242ENST00000515063 ZNF594Q96JF6 807 aaPredicted RBP6.92□□□□□ -1.3
CAST-242ENST00000515063 CFHR5Q9BXR6 569 aa6.92□□□□□ -1.3
CAST-242ENST00000515063 ZMYND15Q9H091 742 aa6.92□□□□□ -1.3
CAST-242ENST00000515063 ZBTB7BO15156 539 aaPredicted RBP6.91□□□□□ -1.3
CAST-242ENST00000515063 SLURP2P0DP57 97 aa6.91□□□□□ -1.3
CAST-242ENST00000515063 MX2P20592 715 aa6.91□□□□□ -1.3
CAST-242ENST00000515063 LMOD1P29536 600 aaPredicted RBP6.91□□□□□ -1.3
CAST-242ENST00000515063 SEC13P55735 322 aa6.91□□□□□ -1.3
CAST-242ENST00000515063 NLRP8Q86W28 1048 aa6.91□□□□□ -1.3
CAST-242ENST00000515063 SLC9A9Q8IVB4 645 aa6.91□□□□□ -1.3
CAST-242ENST00000515063 RUBCNLQ9H714 662 aa6.91□□□□□ -1.3
CAST-242ENST00000515063 VRTNQ9H8Y1 702 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms