RNA–Protein interactions for RNA: ENST00000512234.1

SQSTM1-214, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 1,722 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-214ENST00000512234 PALLDQ8WX93 1383 aa20.32■□□□□ 0.84
SQSTM1-214ENST00000512234 NEFMP07197 916 aa20.32■□□□□ 0.84
SQSTM1-214ENST00000512234 RUNDC1Q96C34 613 aa20.32■□□□□ 0.84
SQSTM1-214ENST00000512234 SCN11AQ9UI33 1791 aa20.31■□□□□ 0.84
SQSTM1-214ENST00000512234 RIPK4P57078 832 aa20.31■□□□□ 0.84
SQSTM1-214ENST00000512234 PTCD1O75127 700 aaKnown RBP20.3■□□□□ 0.84
SQSTM1-214ENST00000512234 TMPOP42166 694 aaKnown RBP20.3■□□□□ 0.84
SQSTM1-214ENST00000512234 MIS18AQ9NYP9 233 aa20.3■□□□□ 0.84
SQSTM1-214ENST00000512234 APAF1O14727 1248 aa20.3■□□□□ 0.84
SQSTM1-214ENST00000512234 SLC4A9Q96Q91 983 aa20.3■□□□□ 0.84
SQSTM1-214ENST00000512234 RBM42Q9BTD8 480 aaKnown RBP20.3■□□□□ 0.84
SQSTM1-214ENST00000512234 CCNL1Q9UK58 526 aaPredicted RBP20.3■□□□□ 0.84
SQSTM1-214ENST00000512234 KCNQ3O43525 872 aa20.29■□□□□ 0.84
SQSTM1-214ENST00000512234 R3HDM1Q15032 1099 aaKnown RBP20.29■□□□□ 0.84
SQSTM1-214ENST00000512234 RTF1Q92541 710 aaKnown RBP20.29■□□□□ 0.84
SQSTM1-214ENST00000512234 PNNQ9H307 717 aaKnown RBP20.29■□□□□ 0.84
SQSTM1-214ENST00000512234 VIRMAQ69YN4 1812 aaKnown RBP20.28■□□□□ 0.84
SQSTM1-214ENST00000512234 TEFQ10587 303 aa20.28■□□□□ 0.84
SQSTM1-214ENST00000512234 SMIM5Q71RC9 77 aa20.28■□□□□ 0.84
SQSTM1-214ENST00000512234 DLG5Q8TDM6 1919 aa20.28■□□□□ 0.84
SQSTM1-214ENST00000512234 RREB1Q92766 1687 aa20.28■□□□□ 0.84
SQSTM1-214ENST00000512234 NUP188Q5SRE5 1749 aa20.27■□□□□ 0.84
SQSTM1-214ENST00000512234 SRCAPQ6ZRS2 3230 aa20.27■□□□□ 0.84
SQSTM1-214ENST00000512234 ZNF827Q17R98 1081 aa20.27■□□□□ 0.83
SQSTM1-214ENST00000512234 SALL2Q9Y467 1007 aaPredicted RBP20.27■□□□□ 0.83
SQSTM1-214ENST00000512234 ADAMTS7Q9UKP4 1686 aa20.26■□□□□ 0.83
SQSTM1-214ENST00000512234 CEMIPQ8WUJ3 1361 aa20.26■□□□□ 0.83
SQSTM1-214ENST00000512234 ITPK1Q13572 414 aa20.26■□□□□ 0.83
SQSTM1-214ENST00000512234 PDGFDQ9GZP0 370 aaPredicted RBP20.26■□□□□ 0.83
SQSTM1-214ENST00000512234 LOC102724428A0A0B4J2F2 783 aa20.25■□□□□ 0.83
SQSTM1-214ENST00000512234 SIK1P57059 783 aa20.25■□□□□ 0.83
SQSTM1-214ENST00000512234 TRIM35Q9UPQ4 493 aa20.25■□□□□ 0.83
SQSTM1-214ENST00000512234 SMARCC1Q92922 1105 aaPredicted RBP20.24■□□□□ 0.83
SQSTM1-214ENST00000512234 MRC1P22897 1456 aa20.24■□□□□ 0.83
SQSTM1-214ENST00000512234 ATP6V1AP38606 617 aa20.24■□□□□ 0.83
SQSTM1-214ENST00000512234 LY75O60449 1722 aa20.24■□□□□ 0.83
SQSTM1-214ENST00000512234 LINC00116Q8NCU8 138 aa20.23■□□□□ 0.83
SQSTM1-214ENST00000512234 BTBD11A6QL63 1104 aa20.22■□□□□ 0.83
SQSTM1-214ENST00000512234 RGPD3A6NKT7 1758 aaPredicted RBP20.22■□□□□ 0.83
SQSTM1-214ENST00000512234 RGPD4Q7Z3J3 1758 aa20.22■□□□□ 0.83
SQSTM1-214ENST00000512234 SLC27A3Q5K4L6 730 aa20.22■□□□□ 0.83
SQSTM1-214ENST00000512234 AMIGO3Q86WK7 504 aa20.22■□□□□ 0.83
SQSTM1-214ENST00000512234 HTATSF1O43719 755 aaKnown RBP20.21■□□□□ 0.83
SQSTM1-214ENST00000512234 NBPF14Q5TI25 921 aa20.2■□□□□ 0.82
SQSTM1-214ENST00000512234 ZNF496Q96IT1 587 aaPredicted RBP20.2■□□□□ 0.82
SQSTM1-214ENST00000512234 PRAMEF22A3QJZ6 481 aa20.19■□□□□ 0.82
SQSTM1-214ENST00000512234 SLC15A2Q16348 729 aa20.19■□□□□ 0.82
SQSTM1-214ENST00000512234 ZNF790Q6PG37 636 aa20.19■□□□□ 0.82
SQSTM1-214ENST00000512234 TAF7Q15545 349 aaPredicted RBP20.19■□□□□ 0.82
SQSTM1-214ENST00000512234 DNAJC10Q8IXB1 793 aa20.19■□□□□ 0.82
SQSTM1-214ENST00000512234 AKT1S1Q96B36 256 aa20.19■□□□□ 0.82
SQSTM1-214ENST00000512234 STK32BQ9NY57 414 aa20.19■□□□□ 0.82
SQSTM1-214ENST00000512234 LAS1LQ9Y4W2 734 aaKnown RBP20.19■□□□□ 0.82
SQSTM1-214ENST00000512234 SIPA1L3O60292 1781 aaPredicted RBP20.18■□□□□ 0.82
SQSTM1-214ENST00000512234 CCER2I3L3R5 266 aa20.17■□□□□ 0.82
SQSTM1-214ENST00000512234 TTC5Q8N0Z6 440 aa20.17■□□□□ 0.82
SQSTM1-214ENST00000512234 KCPQ6ZWJ8 1503 aa20.17■□□□□ 0.82
SQSTM1-214ENST00000512234 PAPPAQ13219 1627 aa20.17■□□□□ 0.82
SQSTM1-214ENST00000512234 TFCP2L1Q9NZI6 479 aa20.16■□□□□ 0.82
SQSTM1-214ENST00000512234 PHF14O94880 888 aa20.15■□□□□ 0.82
SQSTM1-214ENST00000512234 C5P01031 1676 aa20.14■□□□□ 0.81
SQSTM1-214ENST00000512234 TAF1LQ8IZX4 1826 aa20.13■□□□□ 0.81
SQSTM1-214ENST00000512234 PIP4K2AP48426 406 aaPredicted RBP20.13■□□□□ 0.81
SQSTM1-214ENST00000512234 LMOD3Q0VAK6 560 aa20.13■□□□□ 0.81
SQSTM1-214ENST00000512234 KRT24Q2M2I5 525 aa20.13■□□□□ 0.81
SQSTM1-214ENST00000512234 PNPLA7Q6ZV29 1317 aa20.12■□□□□ 0.81
SQSTM1-214ENST00000512234 GNPATO15228 680 aa20.12■□□□□ 0.81
SQSTM1-214ENST00000512234 AK7Q96M32 723 aa20.12■□□□□ 0.81
SQSTM1-214ENST00000512234 TSPYL4Q9UJ04 414 aa20.12■□□□□ 0.81
SQSTM1-214ENST00000512234 C4BP0C0L5 1744 aa20.12■□□□□ 0.81
SQSTM1-214ENST00000512234 MSH5O43196 834 aa20.11■□□□□ 0.81
SQSTM1-214ENST00000512234 ZBTB7AO95365 584 aa20.11■□□□□ 0.81
SQSTM1-214ENST00000512234 CRKLP46109 303 aaKnown RBP20.11■□□□□ 0.81
SQSTM1-214ENST00000512234 USP16Q9Y5T5 823 aa20.11■□□□□ 0.81
SQSTM1-214ENST00000512234 TJP1Q07157 1748 aa20.11■□□□□ 0.81
SQSTM1-214ENST00000512234 COL23A1Q86Y22 540 aaPredicted RBP20.1■□□□□ 0.81
SQSTM1-214ENST00000512234 FMNL2Q96PY5 1086 aa20.1■□□□□ 0.81
SQSTM1-214ENST00000512234 HEG1Q9ULI3 1381 aa20.1■□□□□ 0.81
SQSTM1-214ENST00000512234 CYP19A1P11511 503 aaPredicted RBP20.1■□□□□ 0.81
SQSTM1-214ENST00000512234 WWC1Q8IX03 1113 aa20.1■□□□□ 0.81
SQSTM1-214ENST00000512234 UBR2Q8IWV8 1755 aa20.1■□□□□ 0.81
SQSTM1-214ENST00000512234 TUBGCP6Q96RT7 1819 aa20.09■□□□□ 0.81
SQSTM1-214ENST00000512234 EIF4A1P60842 406 aaKnown RBP20.09■□□□□ 0.81
SQSTM1-214ENST00000512234 INTS5Q6P9B9 1019 aaKnown RBP20.09■□□□□ 0.81
SQSTM1-214ENST00000512234 ATF5Q9Y2D1 282 aaPredicted RBP20.09■□□□□ 0.81
SQSTM1-214ENST00000512234 MYH14Q7Z406 1995 aaKnown RBP20.08■□□□□ 0.8
SQSTM1-214ENST00000512234 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.07■□□□□ 0.8
SQSTM1-214ENST00000512234 CHL1O00533 1208 aa20.07■□□□□ 0.8
SQSTM1-214ENST00000512234 A1BGP04217 495 aa20.07■□□□□ 0.8
SQSTM1-214ENST00000512234 CANXP27824 592 aaKnown RBP20.07■□□□□ 0.8
SQSTM1-214ENST00000512234 MBIPQ9NS73 344 aa20.07■□□□□ 0.8
SQSTM1-214ENST00000512234 ZBTB1Q9Y2K1 713 aa20.07■□□□□ 0.8
SQSTM1-214ENST00000512234 MSL1Q68DK7 614 aa20.06■□□□□ 0.8
SQSTM1-214ENST00000512234 NECTIN2Q92692 538 aa20.06■□□□□ 0.8
SQSTM1-214ENST00000512234 TSR2Q969E8 191 aaKnown RBP20.06■□□□□ 0.8
SQSTM1-214ENST00000512234 SPINK5Q9NQ38 1064 aaPredicted RBP20.06■□□□□ 0.8
SQSTM1-214ENST00000512234 COL5A3P25940 1745 aaPredicted RBP20.06■□□□□ 0.8
SQSTM1-214ENST00000512234 KDM3BQ7LBC6 1761 aa20.05■□□□□ 0.8
SQSTM1-214ENST00000512234 VSIG10Q8N0Z9 540 aa20.05■□□□□ 0.8
SQSTM1-214ENST00000512234 CCDC87Q9NVE4 849 aa20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms