RNA–Protein interactions for RNA: ENST00000509490.5

PDGFRA-208, Transcript of platelet derived growth factor receptor alpha, humanhuman

TSL 1 (best)

Gene PDGFRA, Length 2,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-208ENST00000509490 CEP170BQ9Y4F5 1589 aaPredicted RBP11.34□□□□□ -0.59
PDGFRA-208ENST00000509490 DCTN1Q14203 1278 aa11.34□□□□□ -0.59
PDGFRA-208ENST00000509490 INTS4Q96HW7 963 aaKnown RBP11.34□□□□□ -0.59
PDGFRA-208ENST00000509490 PDLIM2Q96JY6 352 aa11.34□□□□□ -0.59
PDGFRA-208ENST00000509490 MEIS3Q99687 375 aa11.34□□□□□ -0.59
PDGFRA-208ENST00000509490 HSP90AA1P07900 732 aaKnown RBP11.34□□□□□ -0.59
PDGFRA-208ENST00000509490 PDE1AP54750 535 aa11.34□□□□□ -0.59
PDGFRA-208ENST00000509490 C16orf71Q8IYS4 520 aaPredicted RBP11.33□□□□□ -0.6
PDGFRA-208ENST00000509490 SRCIN1Q9C0H9 1055 aa11.33□□□□□ -0.6
PDGFRA-208ENST00000509490 MAP3K19Q56UN5 1328 aa11.33□□□□□ -0.6
PDGFRA-208ENST00000509490 ERBB4Q15303 1308 aa11.32□□□□□ -0.6
PDGFRA-208ENST00000509490 NCKAP5LQ9HCH0 1330 aa11.32□□□□□ -0.6
PDGFRA-208ENST00000509490 KDM3BQ7LBC6 1761 aa11.32□□□□□ -0.6
PDGFRA-208ENST00000509490 GNAI2P04899 355 aa11.32□□□□□ -0.6
PDGFRA-208ENST00000509490 GNAI3P08754 354 aa11.32□□□□□ -0.6
PDGFRA-208ENST00000509490 OTUD7AQ8TE49 926 aaPredicted RBP11.32□□□□□ -0.6
PDGFRA-208ENST00000509490 UBE2Q2Q8WVN8 375 aa11.32□□□□□ -0.6
PDGFRA-208ENST00000509490 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.32□□□□□ -0.6
PDGFRA-208ENST00000509490 ZDHHC9Q9Y397 364 aa11.32□□□□□ -0.6
PDGFRA-208ENST00000509490 ATP8B2P98198 1209 aa11.31□□□□□ -0.6
PDGFRA-208ENST00000509490 PPP4R3CPQ6ZMV5 832 aa11.31□□□□□ -0.6
PDGFRA-208ENST00000509490 TBX22Q9Y458 520 aa11.31□□□□□ -0.6
PDGFRA-208ENST00000509490 SLC4A2P04920 1241 aa11.31□□□□□ -0.6
PDGFRA-208ENST00000509490 NASPP49321 788 aaPredicted RBP11.31□□□□□ -0.6
PDGFRA-208ENST00000509490 HSP90AB2PQ58FF8 381 aa11.31□□□□□ -0.6
PDGFRA-208ENST00000509490 MCM10Q7L590 875 aa11.31□□□□□ -0.6
PDGFRA-208ENST00000509490 DDX49Q9Y6V7 483 aaKnown RBP11.31□□□□□ -0.6
PDGFRA-208ENST00000509490 MTHFSDQ2M296 383 aaKnown RBP11.3□□□□□ -0.6
PDGFRA-208ENST00000509490 ESYT1Q9BSJ8 1104 aa11.3□□□□□ -0.6
PDGFRA-208ENST00000509490 LMO7Q8WWI1 1683 aa11.3□□□□□ -0.6
PDGFRA-208ENST00000509490 KRT24Q2M2I5 525 aa11.3□□□□□ -0.6
PDGFRA-208ENST00000509490 ZSCAN30Q86W11 494 aa11.3□□□□□ -0.6
PDGFRA-208ENST00000509490 BRD1O95696 1058 aa11.29□□□□□ -0.6
PDGFRA-208ENST00000509490 MBD3O95983 291 aa11.29□□□□□ -0.6
PDGFRA-208ENST00000509490 TPM2P07951 284 aa11.29□□□□□ -0.6
PDGFRA-208ENST00000509490 ZSCAN23Q3MJ62 389 aa11.29□□□□□ -0.6
PDGFRA-208ENST00000509490 OVOS2A0A0G2JMS6 1433 aa11.29□□□□□ -0.6
PDGFRA-208ENST00000509490 ADGRL3Q9HAR2 1447 aa11.29□□□□□ -0.6
PDGFRA-208ENST00000509490 MCM5P33992 734 aa11.29□□□□□ -0.6
PDGFRA-208ENST00000509490 CCDC30Q5VVM6 783 aa11.29□□□□□ -0.6
PDGFRA-208ENST00000509490 TRIM44Q96DX7 344 aaPredicted RBP11.29□□□□□ -0.6
PDGFRA-208ENST00000509490 USP42Q9H9J4 1324 aaKnown RBP11.29□□□□□ -0.6
PDGFRA-208ENST00000509490 RGPD8O14715 1765 aaPredicted RBP11.29□□□□□ -0.6
PDGFRA-208ENST00000509490 NCAPD2Q15021 1401 aa11.29□□□□□ -0.6
PDGFRA-208ENST00000509490 HOXB7P09629 217 aa11.28□□□□□ -0.6
PDGFRA-208ENST00000509490 CEMIPQ8WUJ3 1361 aa11.28□□□□□ -0.6
PDGFRA-208ENST00000509490 LRRCC1Q9C099 1032 aa11.28□□□□□ -0.6
PDGFRA-208ENST00000509490 TSPYL4Q9UJ04 414 aa11.28□□□□□ -0.6
PDGFRA-208ENST00000509490 AK9Q5TCS8 1911 aa11.28□□□□□ -0.6
PDGFRA-208ENST00000509490 RAB11FIP3O75154 756 aa11.28□□□□□ -0.6
PDGFRA-208ENST00000509490 G2E3Q7L622 706 aa11.28□□□□□ -0.6
PDGFRA-208ENST00000509490 SSH3Q8TE77 659 aa11.28□□□□□ -0.6
PDGFRA-208ENST00000509490 RTF1Q92541 710 aaKnown RBP11.28□□□□□ -0.6
PDGFRA-208ENST00000509490 CHMP4AQ9BY43 222 aa11.28□□□□□ -0.6
PDGFRA-208ENST00000509490 CAMTA1Q9Y6Y1 1673 aa11.27□□□□□ -0.6
PDGFRA-208ENST00000509490 MAP3K5Q99683 1374 aa11.27□□□□□ -0.6
PDGFRA-208ENST00000509490 SMARCA5O60264 1052 aaPredicted RBP11.27□□□□□ -0.61
PDGFRA-208ENST00000509490 ZNF500O60304 480 aaPredicted RBP11.27□□□□□ -0.61
PDGFRA-208ENST00000509490 MCCP23508 829 aa11.27□□□□□ -0.61
PDGFRA-208ENST00000509490 CHMLP26374 656 aa11.27□□□□□ -0.61
PDGFRA-208ENST00000509490 POLA2Q14181 598 aa11.27□□□□□ -0.61
PDGFRA-208ENST00000509490 TMEM87AQ8NBN3 555 aa11.27□□□□□ -0.61
PDGFRA-208ENST00000509490 ADAMTS7Q9UKP4 1686 aa11.27□□□□□ -0.61
PDGFRA-208ENST00000509490 RRP9O43818 475 aaKnown RBP11.27□□□□□ -0.61
PDGFRA-208ENST00000509490 MX1P20591 662 aa11.27□□□□□ -0.61
PDGFRA-208ENST00000509490 FLIIQ13045 1269 aa11.27□□□□□ -0.61
PDGFRA-208ENST00000509490 LRSAM1Q6UWE0 723 aa11.27□□□□□ -0.61
PDGFRA-208ENST00000509490 GPT2Q8TD30 523 aa11.27□□□□□ -0.61
PDGFRA-208ENST00000509490 EYA1Q99502 592 aa11.27□□□□□ -0.61
PDGFRA-208ENST00000509490 OFD1O75665 1012 aa11.26□□□□□ -0.61
PDGFRA-208ENST00000509490 MCTP1Q6DN14 999 aa11.26□□□□□ -0.61
PDGFRA-208ENST00000509490 TMX3Q96JJ7 454 aa11.26□□□□□ -0.61
PDGFRA-208ENST00000509490 STK31Q9BXU1 1019 aa11.26□□□□□ -0.61
PDGFRA-208ENST00000509490 LTKP29376 864 aa11.26□□□□□ -0.61
PDGFRA-208ENST00000509490 CYB5RLQ6IPT4 315 aa11.26□□□□□ -0.61
PDGFRA-208ENST00000509490 ANP32BQ92688 251 aaKnown RBP11.26□□□□□ -0.61
PDGFRA-208ENST00000509490 NOL7Q9UMY1 257 aaKnown RBP11.26□□□□□ -0.61
PDGFRA-208ENST00000509490 NFAT5O94916 1531 aa11.26□□□□□ -0.61
PDGFRA-208ENST00000509490 CHD2O14647 1828 aaKnown RBP11.26□□□□□ -0.61
PDGFRA-208ENST00000509490 GNAT3A8MTJ3 354 aa11.25□□□□□ -0.61
PDGFRA-208ENST00000509490 ZGPATQ8N5A5 531 aaKnown RBP11.25□□□□□ -0.61
PDGFRA-208ENST00000509490 PKP1Q13835 747 aa11.25□□□□□ -0.61
PDGFRA-208ENST00000509490 ESF1Q9H501 851 aaKnown RBP11.25□□□□□ -0.61
PDGFRA-208ENST00000509490 FOXD4L1Q9NU39 408 aa11.25□□□□□ -0.61
PDGFRA-208ENST00000509490 HSPA4P34932 840 aa11.24□□□□□ -0.61
PDGFRA-208ENST00000509490 LTN1O94822 1766 aa11.24□□□□□ -0.61
PDGFRA-208ENST00000509490 KCNB2Q92953 911 aa11.23□□□□□ -0.61
PDGFRA-208ENST00000509490 RBSNQ9H1K0 784 aa11.23□□□□□ -0.61
PDGFRA-208ENST00000509490 FOXO3O43524 673 aa11.23□□□□□ -0.61
PDGFRA-208ENST00000509490 MTX1Q13505 466 aa11.23□□□□□ -0.61
PDGFRA-208ENST00000509490 TAF7Q15545 349 aaPredicted RBP11.23□□□□□ -0.61
PDGFRA-208ENST00000509490 CAVIN1Q6NZI2 390 aaKnown RBP11.23□□□□□ -0.61
PDGFRA-208ENST00000509490 USP44Q9H0E7 712 aa11.23□□□□□ -0.61
PDGFRA-208ENST00000509490 HOXC9P31274 260 aa11.22□□□□□ -0.61
PDGFRA-208ENST00000509490 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.22□□□□□ -0.61
PDGFRA-208ENST00000509490 SIPA1L3O60292 1781 aaPredicted RBP11.22□□□□□ -0.61
PDGFRA-208ENST00000509490 RPAP1Q9BWH6 1393 aaPredicted RBP11.22□□□□□ -0.61
PDGFRA-208ENST00000509490 PNMA6EA0A0J9YXQ4 647 aa11.22□□□□□ -0.61
PDGFRA-208ENST00000509490 TMEM63CQ9P1W3 806 aa11.22□□□□□ -0.61
PDGFRA-208ENST00000509490 RAD50Q92878 1312 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms