RNA–Protein interactions for RNA: ENST00000506244.5

SNCA-209, Transcript of synuclein alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SNCA, Length 570 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-209ENST00000506244 ZNF831Q5JPB2 1677 aa22.16■■□□□ 1.14
SNCA-209ENST00000506244 TAF1LQ8IZX4 1826 aa22.15■■□□□ 1.14
SNCA-209ENST00000506244 MAPK8IP3Q9UPT6 1336 aa22.15■■□□□ 1.14
SNCA-209ENST00000506244 LOC102724428A0A0B4J2F2 783 aa22.15■■□□□ 1.14
SNCA-209ENST00000506244 SIK1P57059 783 aa22.15■■□□□ 1.14
SNCA-209ENST00000506244 ATG3Q9NT62 314 aa22.15■■□□□ 1.14
SNCA-209ENST00000506244 WDR43Q15061 677 aaKnown RBP eCLIP22.14■■□□□ 1.13
SNCA-209ENST00000506244 NFATC2IPQ8NCF5 419 aa22.14■■□□□ 1.13
SNCA-209ENST00000506244 ANP32CO43423 234 aa22.13■■□□□ 1.13
SNCA-209ENST00000506244 ZNF827Q17R98 1081 aa22.13■■□□□ 1.13
SNCA-209ENST00000506244 RTF1Q92541 710 aaKnown RBP22.13■■□□□ 1.13
SNCA-209ENST00000506244 AKT1S1Q96B36 256 aa22.13■■□□□ 1.13
SNCA-209ENST00000506244 LGR6Q9HBX8 967 aa22.13■■□□□ 1.13
SNCA-209ENST00000506244 C4BP0C0L5 1744 aa22.12■■□□□ 1.13
SNCA-209ENST00000506244 KCNQ4P56696 695 aa22.12■■□□□ 1.13
SNCA-209ENST00000506244 TEFQ10587 303 aa22.12■■□□□ 1.13
SNCA-209ENST00000506244 TFCP2L1Q9NZI6 479 aa22.11■■□□□ 1.13
SNCA-209ENST00000506244 CEMIPQ8WUJ3 1361 aa22.11■■□□□ 1.13
SNCA-209ENST00000506244 CICQ96RK0 1608 aaPredicted RBP22.1■■□□□ 1.13
SNCA-209ENST00000506244 HTATSF1O43719 755 aaKnown RBP22.1■■□□□ 1.13
SNCA-209ENST00000506244 ATP6V1AP38606 617 aa22.1■■□□□ 1.13
SNCA-209ENST00000506244 RBM42Q9BTD8 480 aaKnown RBP22.1■■□□□ 1.13
SNCA-209ENST00000506244 TUBGCP6Q96RT7 1819 aa22.1■■□□□ 1.13
SNCA-209ENST00000506244 AK7Q96M32 723 aa22.09■■□□□ 1.13
SNCA-209ENST00000506244 PLEKHF1Q96S99 279 aa22.09■■□□□ 1.13
SNCA-209ENST00000506244 SIPA1L3O60292 1781 aaPredicted RBP22.08■■□□□ 1.13
SNCA-209ENST00000506244 IL17REQ8NFR9 667 aa22.07■■□□□ 1.12
SNCA-209ENST00000506244 SPON1Q9HCB6 807 aa22.07■■□□□ 1.12
SNCA-209ENST00000506244 COL5A3P25940 1745 aaPredicted RBP22.06■■□□□ 1.12
SNCA-209ENST00000506244 NFE2L2Q16236 605 aa22.06■■□□□ 1.12
SNCA-209ENST00000506244 TTC5Q8N0Z6 440 aa22.06■■□□□ 1.12
SNCA-209ENST00000506244 FLAD1Q8NFF5 587 aa22.06■■□□□ 1.12
SNCA-209ENST00000506244 PNPLA7Q6ZV29 1317 aa22.06■■□□□ 1.12
SNCA-209ENST00000506244 UBR2Q8IWV8 1755 aa22.05■■□□□ 1.12
SNCA-209ENST00000506244 PTCD1O75127 700 aaKnown RBP22.05■■□□□ 1.12
SNCA-209ENST00000506244 MTFR1LQ9H019 292 aa22.05■■□□□ 1.12
SNCA-209ENST00000506244 DLG5Q8TDM6 1919 aa22.04■■□□□ 1.12
SNCA-209ENST00000506244 ITPK1Q13572 414 aa22.04■■□□□ 1.12
SNCA-209ENST00000506244 LINC00116Q8NCU8 138 aa22.04■■□□□ 1.12
SNCA-209ENST00000506244 SLC16A10Q8TF71 515 aa22.04■■□□□ 1.12
SNCA-209ENST00000506244 KCPQ6ZWJ8 1503 aa22.04■■□□□ 1.12
SNCA-209ENST00000506244 UBR3Q6ZT12 1888 aa22.03■■□□□ 1.12
SNCA-209ENST00000506244 TJP1Q07157 1748 aa22.03■■□□□ 1.12
SNCA-209ENST00000506244 LMOD3Q0VAK6 560 aa22.02■■□□□ 1.12
SNCA-209ENST00000506244 MCM10Q7L590 875 aa22.02■■□□□ 1.12
SNCA-209ENST00000506244 CNTNAP4Q9C0A0 1308 aa22.02■■□□□ 1.12
SNCA-209ENST00000506244 ZBTB7AO95365 584 aa22.01■■□□□ 1.11
SNCA-209ENST00000506244 SSFA2P28290 1259 aa22.01■■□□□ 1.11
SNCA-209ENST00000506244 SLC39A6Q13433 755 aa22.01■■□□□ 1.11
SNCA-209ENST00000506244 RUNDC1Q96C34 613 aa22.01■■□□□ 1.11
SNCA-209ENST00000506244 SLC4A9Q96Q91 983 aa22.01■■□□□ 1.11
SNCA-209ENST00000506244 PDGFDQ9GZP0 370 aaPredicted RBP22.01■■□□□ 1.11
SNCA-209ENST00000506244 BTBD11A6QL63 1104 aa22■■□□□ 1.11
SNCA-209ENST00000506244 GNPATO15228 680 aa22■■□□□ 1.11
SNCA-209ENST00000506244 ZNF790Q6PG37 636 aa22■■□□□ 1.11
SNCA-209ENST00000506244 VSIG10Q8N0Z9 540 aa22■■□□□ 1.11
SNCA-209ENST00000506244 ADAMTS8Q9UP79 889 aa22■■□□□ 1.11
SNCA-209ENST00000506244 MSH5O43196 834 aa21.99■■□□□ 1.11
SNCA-209ENST00000506244 RC3H1Q5TC82 1133 aaKnown RBP21.99■■□□□ 1.11
SNCA-209ENST00000506244 SRCAPQ6ZRS2 3230 aa21.99■■□□□ 1.11
SNCA-209ENST00000506244 PPP1R1BQ9UD71 204 aaPredicted RBP21.98■■□□□ 1.11
SNCA-209ENST00000506244 DCTN1Q14203 1278 aa21.97■■□□□ 1.11
SNCA-209ENST00000506244 CCDC146Q8IYE0 955 aa21.97■■□□□ 1.11
SNCA-209ENST00000506244 MRS2Q9HD23 443 aa21.97■■□□□ 1.11
SNCA-209ENST00000506244 RTCBQ9Y3I0 505 aaKnown RBP21.97■■□□□ 1.11
SNCA-209ENST00000506244 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.96■■□□□ 1.11
SNCA-209ENST00000506244 PHF14O94880 888 aa21.96■■□□□ 1.11
SNCA-209ENST00000506244 ADRA2BP18089 450 aa21.96■■□□□ 1.11
SNCA-209ENST00000506244 TMPOP42166 694 aaKnown RBP21.96■■□□□ 1.11
SNCA-209ENST00000506244 RIPK4P57078 832 aa21.96■■□□□ 1.11
SNCA-209ENST00000506244 COL23A1Q86Y22 540 aaPredicted RBP21.96■■□□□ 1.11
SNCA-209ENST00000506244 PNISRQ8TF01 805 aaKnown RBP21.96■■□□□ 1.11
SNCA-209ENST00000506244 FMNL2Q96PY5 1086 aa21.96■■□□□ 1.11
SNCA-209ENST00000506244 HEG1Q9ULI3 1381 aa21.96■■□□□ 1.11
SNCA-209ENST00000506244 CRKLP46109 303 aaKnown RBP21.95■■□□□ 1.1
SNCA-209ENST00000506244 TAF7Q15545 349 aaPredicted RBP21.95■■□□□ 1.1
SNCA-209ENST00000506244 ATF5Q9Y2D1 282 aaPredicted RBP21.95■■□□□ 1.1
SNCA-209ENST00000506244 POLD1P28340 1107 aa21.94■■□□□ 1.1
SNCA-209ENST00000506244 DNAJC10Q8IXB1 793 aa21.94■■□□□ 1.1
SNCA-209ENST00000506244 ZNF496Q96IT1 587 aaPredicted RBP21.94■■□□□ 1.1
SNCA-209ENST00000506244 TEX13AQ9BXU3 409 aaPredicted RBP21.94■■□□□ 1.1
SNCA-209ENST00000506244 COL24A1Q17RW2 1714 aa21.94■■□□□ 1.1
SNCA-209ENST00000506244 STARD3NLO95772 234 aa21.93■■□□□ 1.1
SNCA-209ENST00000506244 RPS6KA4O75676 772 aa21.92■■□□□ 1.1
SNCA-209ENST00000506244 PTGER2P43116 358 aa21.92■■□□□ 1.1
SNCA-209ENST00000506244 CCDC87Q9NVE4 849 aa21.92■■□□□ 1.1
SNCA-209ENST00000506244 MYH14Q7Z406 1995 aaKnown RBP21.92■■□□□ 1.1
SNCA-209ENST00000506244 KDM3BQ7LBC6 1761 aa21.92■■□□□ 1.1
SNCA-209ENST00000506244 TRAPPC3LQ5T215 181 aa21.91■■□□□ 1.1
SNCA-209ENST00000506244 CYP19A1P11511 503 aaPredicted RBP21.9■■□□□ 1.1
SNCA-209ENST00000506244 SGIP1Q9BQI5 828 aa21.9■■□□□ 1.1
SNCA-209ENST00000506244 RRP7AQ9Y3A4 280 aaKnown RBP21.9■■□□□ 1.1
SNCA-209ENST00000506244 C4AP0C0L4 1744 aa21.89■■□□□ 1.1
SNCA-209ENST00000506244 NEUROD2Q15784 382 aa21.89■■□□□ 1.09
SNCA-209ENST00000506244 CCDC184Q52MB2 194 aa21.89■■□□□ 1.09
SNCA-209ENST00000506244 AMIGO3Q86WK7 504 aa21.89■■□□□ 1.09
SNCA-209ENST00000506244 THUMPD2Q9BTF0 503 aaKnown RBP21.88■■□□□ 1.09
SNCA-209ENST00000506244 BABAM1Q9NWV8 329 aa21.88■■□□□ 1.09
SNCA-209ENST00000506244 RFC4P35249 363 aa21.87■■□□□ 1.09
SNCA-209ENST00000506244 INTS5Q6P9B9 1019 aaKnown RBP21.87■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms