RNA–Protein interactions for RNA: ENST00000505010.5

TPM3-218, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 540 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-218ENST00000505010 PKD1L3Q7Z443 1732 aa12.21□□□□□ -0.45
TPM3-218ENST00000505010 LMOD3Q0VAK6 560 aa12.21□□□□□ -0.45
TPM3-218ENST00000505010 NLRP2Q9NX02 1062 aa12.21□□□□□ -0.45
TPM3-218ENST00000505010 TRIM35Q9UPQ4 493 aa12.21□□□□□ -0.45
TPM3-218ENST00000505010 E9PSI1 815 aa12.2□□□□□ -0.46
TPM3-218ENST00000505010 GRIN3BO60391 1043 aa12.2□□□□□ -0.46
TPM3-218ENST00000505010 WDR63Q8IWG1 891 aa12.2□□□□□ -0.46
TPM3-218ENST00000505010 GAS2L2Q8NHY3 880 aa12.2□□□□□ -0.46
TPM3-218ENST00000505010 SLC16A10Q8TF71 515 aa12.2□□□□□ -0.46
TPM3-218ENST00000505010 ACSBG1Q96GR2 724 aa12.2□□□□□ -0.46
TPM3-218ENST00000505010 SLFN5Q08AF3 891 aa12.19□□□□□ -0.46
TPM3-218ENST00000505010 MTHFSDQ2M296 383 aaKnown RBP12.19□□□□□ -0.46
TPM3-218ENST00000505010 MEGF6O75095 1541 aa12.18□□□□□ -0.46
TPM3-218ENST00000505010 ZNF827Q17R98 1081 aa12.18□□□□□ -0.46
TPM3-218ENST00000505010 SPINK5Q9NQ38 1064 aaPredicted RBP12.18□□□□□ -0.46
TPM3-218ENST00000505010 CALD1Q05682 793 aaKnown RBP12.17□□□□□ -0.46
TPM3-218ENST00000505010 DUSP27Q5VZP5 1158 aa12.17□□□□□ -0.46
TPM3-218ENST00000505010 THUMPD2Q9BTF0 503 aaKnown RBP12.17□□□□□ -0.46
TPM3-218ENST00000505010 MYH16Q9H6N6 1097 aa12.17□□□□□ -0.46
TPM3-218ENST00000505010 SHANK3Q9BYB0 1731 aa12.17□□□□□ -0.46
TPM3-218ENST00000505010 IL16Q14005 1332 aa12.16□□□□□ -0.46
TPM3-218ENST00000505010 HSPA6P17066 643 aa12.16□□□□□ -0.46
TPM3-218ENST00000505010 NLGN2Q8NFZ4 835 aa12.16□□□□□ -0.46
TPM3-218ENST00000505010 RAPGEF4Q8WZA2 1011 aa12.16□□□□□ -0.46
TPM3-218ENST00000505010 GPBP1L1Q9HC44 474 aaPredicted RBP12.16□□□□□ -0.46
TPM3-218ENST00000505010 LRRC4BQ9NT99 713 aa12.16□□□□□ -0.46
TPM3-218ENST00000505010 SCN11AQ9UI33 1791 aa12.15□□□□□ -0.46
TPM3-218ENST00000505010 TATP17735 454 aaPredicted RBP12.15□□□□□ -0.46
TPM3-218ENST00000505010 DCTN1Q14203 1278 aa12.15□□□□□ -0.46
TPM3-218ENST00000505010 PLEKHO1Q53GL0 409 aaPredicted RBP12.15□□□□□ -0.46
TPM3-218ENST00000505010 ZNF530Q6P9A1 599 aaPredicted RBP12.15□□□□□ -0.46
TPM3-218ENST00000505010 TRMT2AQ8IZ69 625 aaKnown RBP12.15□□□□□ -0.46
TPM3-218ENST00000505010 RTF1Q92541 710 aaKnown RBP12.15□□□□□ -0.46
TPM3-218ENST00000505010 AKT1S1Q96B36 256 aa12.15□□□□□ -0.46
TPM3-218ENST00000505010 FANCIQ9NVI1 1328 aa12.14□□□□□ -0.47
TPM3-218ENST00000505010 TNS2Q63HR2 1409 aa12.14□□□□□ -0.47
TPM3-218ENST00000505010 GNAT3A8MTJ3 354 aa12.14□□□□□ -0.47
TPM3-218ENST00000505010 YBX3P16989 372 aaKnown RBP eCLIP12.14□□□□□ -0.47
TPM3-218ENST00000505010 AMOTQ4VCS5 1084 aa12.14□□□□□ -0.47
TPM3-218ENST00000505010 SLC27A3Q5K4L6 730 aa12.14□□□□□ -0.47
TPM3-218ENST00000505010 MCM10Q7L590 875 aa12.14□□□□□ -0.47
TPM3-218ENST00000505010 TSR2Q969E8 191 aaKnown RBP12.14□□□□□ -0.47
TPM3-218ENST00000505010 TFCP2L1Q9NZI6 479 aa12.14□□□□□ -0.47
TPM3-218ENST00000505010 LAS1LQ9Y4W2 734 aaKnown RBP12.14□□□□□ -0.47
TPM3-218ENST00000505010 SUPT16HQ9Y5B9 1047 aaKnown RBP12.14□□□□□ -0.47
TPM3-218ENST00000505010 PLEKHG2Q9H7P9 1386 aa12.14□□□□□ -0.47
TPM3-218ENST00000505010 ADAMTS7Q9UKP4 1686 aa12.13□□□□□ -0.47
TPM3-218ENST00000505010 SIPA1L3O60292 1781 aaPredicted RBP12.13□□□□□ -0.47
TPM3-218ENST00000505010 NEFLP07196 543 aa12.13□□□□□ -0.47
TPM3-218ENST00000505010 RCAN3Q9UKA8 241 aa12.13□□□□□ -0.47
TPM3-218ENST00000505010 KDM3BQ7LBC6 1761 aa12.13□□□□□ -0.47
TPM3-218ENST00000505010 PNPLA7Q6ZV29 1317 aa12.12□□□□□ -0.47
TPM3-218ENST00000505010 ATP10DQ9P241 1426 aa12.12□□□□□ -0.47
TPM3-218ENST00000505010 KAT6BQ8WYB5 2073 aa12.12□□□□□ -0.47
TPM3-218ENST00000505010 PAPPAQ13219 1627 aa12.12□□□□□ -0.47
TPM3-218ENST00000505010 HTATSF1O43719 755 aaKnown RBP12.12□□□□□ -0.47
TPM3-218ENST00000505010 GNAI1P63096 354 aa12.12□□□□□ -0.47
TPM3-218ENST00000505010 C1orf141Q5JVX7 400 aa12.12□□□□□ -0.47
TPM3-218ENST00000505010 IFT57Q9NWB7 429 aa12.12□□□□□ -0.47
TPM3-218ENST00000505010 GTF3C3Q9Y5Q9 886 aa12.12□□□□□ -0.47
TPM3-218ENST00000505010 NHSQ6T4R5 1651 aa12.12□□□□□ -0.47
TPM3-218ENST00000505010 IL2RBP14784 551 aa12.11□□□□□ -0.47
TPM3-218ENST00000505010 ZNF526Q8TF50 670 aaPredicted RBP12.11□□□□□ -0.47
TPM3-218ENST00000505010 SPG7Q9UQ90 795 aa12.11□□□□□ -0.47
TPM3-218ENST00000505010 AKAP4Q5JQC9 854 aa12.1□□□□□ -0.47
TPM3-218ENST00000505010 MSH5O43196 834 aa12.09□□□□□ -0.47
TPM3-218ENST00000505010 EXOSC9Q06265 439 aaKnown RBP12.09□□□□□ -0.47
TPM3-218ENST00000505010 CFAP44Q96MT7 982 aa12.09□□□□□ -0.47
TPM3-218ENST00000505010 MBIPQ9NS73 344 aa12.09□□□□□ -0.47
TPM3-218ENST00000505010 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.09□□□□□ -0.471e-6■■■■□ 20
TPM3-218ENST00000505010 ZNF853P0CG23 659 aa12.08□□□□□ -0.48
TPM3-218ENST00000505010 MPRIPQ6WCQ1 1025 aa12.08□□□□□ -0.48
TPM3-218ENST00000505010 BTAF1O14981 1849 aa12.08□□□□□ -0.48
TPM3-218ENST00000505010 TOGARAM1Q9Y4F4 1720 aa12.08□□□□□ -0.48
TPM3-218ENST00000505010 PCDH11XQ9BZA7 1347 aa12.08□□□□□ -0.48
TPM3-218ENST00000505010 PCDH11YQ9BZA8 1340 aa12.08□□□□□ -0.48
TPM3-218ENST00000505010 CEMIPQ8WUJ3 1361 aa12.07□□□□□ -0.48
TPM3-218ENST00000505010 KDM6AO15550 1401 aaPredicted RBP12.07□□□□□ -0.48
TPM3-218ENST00000505010 PHKG2P15735 406 aa12.07□□□□□ -0.48
TPM3-218ENST00000505010 RRP1P56182 461 aaKnown RBP12.07□□□□□ -0.48
TPM3-218ENST00000505010 KCNQ4P56696 695 aa12.07□□□□□ -0.48
TPM3-218ENST00000505010 IRX6P78412 446 aaPredicted RBP12.07□□□□□ -0.48
TPM3-218ENST00000505010 IL17REQ8NFR9 667 aa12.07□□□□□ -0.48
TPM3-218ENST00000505010 DDX54Q8TDD1 881 aaKnown RBP12.07□□□□□ -0.48
TPM3-218ENST00000505010 FKBP8Q14318 412 aa12.06□□□□□ -0.48
TPM3-218ENST00000505010 IFNL2Q8IZJ0 200 aa12.06□□□□□ -0.48
TPM3-218ENST00000505010 ZCRB1Q8TBF4 217 aaKnown RBP12.06□□□□□ -0.48
TPM3-218ENST00000505010 SYTL4Q96C24 671 aaPredicted RBP12.06□□□□□ -0.48
TPM3-218ENST00000505010 TSPYL4Q9UJ04 414 aa12.06□□□□□ -0.48
TPM3-218ENST00000505010 CD2APQ9Y5K6 639 aa12.06□□□□□ -0.48
TPM3-218ENST00000505010 MRC1P22897 1456 aa12.06□□□□□ -0.48
TPM3-218ENST00000505010 RNF123Q5XPI4 1314 aa12.06□□□□□ -0.48
TPM3-218ENST00000505010 COL24A1Q17RW2 1714 aa12.06□□□□□ -0.48
TPM3-218ENST00000505010 CHL1O00533 1208 aa12.05□□□□□ -0.48
TPM3-218ENST00000505010 RNMTO43148 476 aaKnown RBP12.05□□□□□ -0.48
TPM3-218ENST00000505010 CT47B1P0C2W7 299 aaPredicted RBP12.05□□□□□ -0.48
TPM3-218ENST00000505010 APLP1P51693 650 aa12.05□□□□□ -0.48
TPM3-218ENST00000505010 TEFQ10587 303 aa12.05□□□□□ -0.48
TPM3-218ENST00000505010 LGR6Q9HBX8 967 aa12.05□□□□□ -0.48
TPM3-218ENST00000505010 MIS18AQ9NYP9 233 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms