RNA–Protein interactions for RNA: ENST00000503492.5

PCDH1-204, Transcript of protocadherin 1, humanhuman

TSL 5 BASIC

Gene PCDH1, Length 2,373 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-204ENST00000503492 DCCP43146 1447 aa28.06■■■□□ 2.08
PCDH1-204ENST00000503492 DDX17Q92841 729 aaKnown RBP28.06■■■□□ 2.08
PCDH1-204ENST00000503492 EIF4A1P60842 406 aaKnown RBP28.06■■■□□ 2.08
PCDH1-204ENST00000503492 HDGFL1Q5TGJ6 251 aa28.06■■■□□ 2.08
PCDH1-204ENST00000503492 RGPD5Q99666 1765 aa28.05■■■□□ 2.08
PCDH1-204ENST00000503492 MPRIPQ6WCQ1 1025 aa28.05■■■□□ 2.08
PCDH1-204ENST00000503492 PLEKHM2Q8IWE5 1019 aa28.04■■■□□ 2.08
PCDH1-204ENST00000503492 NCOA3Q9Y6Q9 1424 aa28.04■■■□□ 2.08
PCDH1-204ENST00000503492 ZC3H6P61129 1189 aaKnown RBP28.04■■■□□ 2.08
PCDH1-204ENST00000503492 USP35Q9P2H5 1018 aa28.03■■■□□ 2.08
PCDH1-204ENST00000503492 KCNQ3O43525 872 aa28.02■■■□□ 2.08
PCDH1-204ENST00000503492 HSPA2P54652 639 aa28.02■■■□□ 2.08
PCDH1-204ENST00000503492 TEFQ10587 303 aa28.02■■■□□ 2.08
PCDH1-204ENST00000503492 RNMTO43148 476 aaKnown RBP28.02■■■□□ 2.08
PCDH1-204ENST00000503492 C16orf71Q8IYS4 520 aaPredicted RBP28.02■■■□□ 2.08
PCDH1-204ENST00000503492 TBC1D2Q9BYX2 928 aa28.01■■■□□ 2.07
PCDH1-204ENST00000503492 ERBB3P21860 1342 aa28.01■■■□□ 2.07
PCDH1-204ENST00000503492 C1orf141Q5JVX7 400 aa28.01■■■□□ 2.07
PCDH1-204ENST00000503492 GNAI2P04899 355 aa28■■■□□ 2.07
PCDH1-204ENST00000503492 PHAXQ9H814 394 aaKnown RBP28■■■□□ 2.07
PCDH1-204ENST00000503492 BTBD11A6QL63 1104 aa28■■■□□ 2.07
PCDH1-204ENST00000503492 GSPT1P15170 499 aaKnown RBP28■■■□□ 2.07
PCDH1-204ENST00000503492 N4BP2Q86UW6 1770 aaPredicted RBP27.99■■■□□ 2.07
PCDH1-204ENST00000503492 HMMRO75330 724 aa27.99■■■□□ 2.07
PCDH1-204ENST00000503492 HOXB7P09629 217 aa27.99■■■□□ 2.07
PCDH1-204ENST00000503492 EIF2S2P20042 333 aaKnown RBP27.99■■■□□ 2.07
PCDH1-204ENST00000503492 NFKBIBQ15653 356 aa27.99■■■□□ 2.07
PCDH1-204ENST00000503492 CADPS2Q86UW7 1296 aa27.98■■■□□ 2.07
PCDH1-204ENST00000503492 BCL11AQ9H165 835 aa27.98■■■□□ 2.07
PCDH1-204ENST00000503492 PXDNLA1KZ92 1463 aa27.98■■■□□ 2.07
PCDH1-204ENST00000503492 SMARCA5O60264 1052 aaPredicted RBP27.97■■■□□ 2.07
PCDH1-204ENST00000503492 TBC1D9Q6ZT07 1266 aa27.97■■■□□ 2.07
PCDH1-204ENST00000503492 GNAI3P08754 354 aa27.97■■■□□ 2.07
PCDH1-204ENST00000503492 OTUD7AQ8TE49 926 aaPredicted RBP27.97■■■□□ 2.07
PCDH1-204ENST00000503492 OVOS2A0A0G2JMS6 1433 aa27.97■■■□□ 2.07
PCDH1-204ENST00000503492 APBB1O00213 710 aa27.96■■■□□ 2.07
PCDH1-204ENST00000503492 RBM25P49756 843 aaKnown RBP27.96■■■□□ 2.07
PCDH1-204ENST00000503492 TTC22Q5TAA0 569 aa27.95■■■□□ 2.06
PCDH1-204ENST00000503492 NPHP3Q7Z494 1330 aa27.95■■■□□ 2.06
PCDH1-204ENST00000503492 DEKP35659 375 aaKnown RBP27.94■■■□□ 2.06
PCDH1-204ENST00000503492 CHPF2Q9P2E5 772 aa27.94■■■□□ 2.06
PCDH1-204ENST00000503492 CDC45O75419 566 aa27.93■■■□□ 2.06
PCDH1-204ENST00000503492 CABLES1Q8TDN4 633 aa27.92■■■□□ 2.06
PCDH1-204ENST00000503492 USP44Q9H0E7 712 aa27.92■■■□□ 2.06
PCDH1-204ENST00000503492 COL18A1P39060 1754 aa27.92■■■□□ 2.06
PCDH1-204ENST00000503492 TNS3Q68CZ2 1445 aa27.92■■■□□ 2.06
PCDH1-204ENST00000503492 ATP8B2P98198 1209 aa27.91■■■□□ 2.06
PCDH1-204ENST00000503492 PNMA6EA0A0J9YXQ4 647 aa27.9■■■□□ 2.06
PCDH1-204ENST00000503492 CHMP4AQ9BY43 222 aa27.9■■■□□ 2.06
PCDH1-204ENST00000503492 SLKQ9H2G2 1235 aaPredicted RBP27.9■■■□□ 2.06
PCDH1-204ENST00000503492 NLRP2Q9NX02 1062 aa27.9■■■□□ 2.06
PCDH1-204ENST00000503492 LMTK3Q96Q04 1460 aa27.9■■■□□ 2.06
PCDH1-204ENST00000503492 ADAMTS7Q9UKP4 1686 aa27.9■■■□□ 2.06
PCDH1-204ENST00000503492 SIPA1L3O60292 1781 aaPredicted RBP27.9■■■□□ 2.06
PCDH1-204ENST00000503492 LRRFIP2Q9Y608 721 aaKnown RBP27.89■■■□□ 2.06
PCDH1-204ENST00000503492 XIRP1Q702N8 1843 aaKnown RBP27.89■■■□□ 2.06
PCDH1-204ENST00000503492 ANTXR1Q9H6X2 564 aa27.89■■■□□ 2.06
PCDH1-204ENST00000503492 CRYBG1Q9Y4K1 1723 aa27.88■■■□□ 2.05
PCDH1-204ENST00000503492 EXOC6BQ9Y2D4 811 aa27.88■■■□□ 2.05
PCDH1-204ENST00000503492 HEG1Q9ULI3 1381 aa27.88■■■□□ 2.05
PCDH1-204ENST00000503492 ANXA1P04083 346 aa27.87■■■□□ 2.05
PCDH1-204ENST00000503492 RAPGEF4Q8WZA2 1011 aa27.87■■■□□ 2.05
PCDH1-204ENST00000503492 SPATA31A3Q5VYP0 1347 aa27.87■■■□□ 2.05
PCDH1-204ENST00000503492 GIGYF1O75420 1035 aaPredicted RBP27.86■■■□□ 2.05
PCDH1-204ENST00000503492 UBTFL1P0CB47 393 aaPredicted RBP27.86■■■□□ 2.05
PCDH1-204ENST00000503492 SRCIN1Q9C0H9 1055 aa27.86■■■□□ 2.05
PCDH1-204ENST00000503492 PI4KAP2A4QPH2 592 aa27.85■■■□□ 2.05
PCDH1-204ENST00000503492 CHRNA2Q15822 529 aa27.85■■■□□ 2.05
PCDH1-204ENST00000503492 PI4KAP1Q8N8J0 262 aa27.85■■■□□ 2.05
PCDH1-204ENST00000503492 DNAAF4Q8WXU2 420 aa27.84■■■□□ 2.05
PCDH1-204ENST00000503492 FRAT2O75474 233 aaPredicted RBP27.84■■■□□ 2.05
PCDH1-204ENST00000503492 SDSP20132 328 aa27.84■■■□□ 2.05
PCDH1-204ENST00000503492 KIF2CQ99661 725 aa27.84■■■□□ 2.05
PCDH1-204ENST00000503492 DBF4Q9UBU7 674 aaPredicted RBP27.84■■■□□ 2.05
PCDH1-204ENST00000503492 MEGF6O75095 1541 aa27.83■■■□□ 2.05
PCDH1-204ENST00000503492 TATP17735 454 aaPredicted RBP27.83■■■□□ 2.05
PCDH1-204ENST00000503492 BEND3Q5T5X7 828 aa27.83■■■□□ 2.05
PCDH1-204ENST00000503492 PRAMEF22A3QJZ6 481 aa27.82■■■□□ 2.04
PCDH1-204ENST00000503492 ADCY9O60503 1353 aa27.82■■■□□ 2.04
PCDH1-204ENST00000503492 OSBPL3Q9H4L5 887 aa27.82■■■□□ 2.04
PCDH1-204ENST00000503492 CSB-PGBD3P0DP91 1061 aa27.81■■■□□ 2.04
PCDH1-204ENST00000503492 IBTKQ9P2D0 1353 aaPredicted RBP27.81■■■□□ 2.04
PCDH1-204ENST00000503492 BRINP3Q76B58 766 aa27.81■■■□□ 2.04
PCDH1-204ENST00000503492 LRRCC1Q9C099 1032 aa27.81■■■□□ 2.04
PCDH1-204ENST00000503492 KDM6AO15550 1401 aaPredicted RBP27.81■■■□□ 2.04
PCDH1-204ENST00000503492 PDE1AP54750 535 aa27.8■■■□□ 2.04
PCDH1-204ENST00000503492 SPRYD3Q8NCJ5 442 aa27.8■■■□□ 2.04
PCDH1-204ENST00000503492 ABCC6O95255 1503 aa27.8■■■□□ 2.04
PCDH1-204ENST00000503492 PHKG2P15735 406 aa27.8■■■□□ 2.04
PCDH1-204ENST00000503492 PROSER3Q2NL68 480 aa27.8■■■□□ 2.04
PCDH1-204ENST00000503492 HSCBQ8IWL3 235 aa27.8■■■□□ 2.04
PCDH1-204ENST00000503492 SCN11AQ9UI33 1791 aa27.8■■■□□ 2.04
PCDH1-204ENST00000503492 SPG7Q9UQ90 795 aa27.79■■■□□ 2.04
PCDH1-204ENST00000503492 SALL3Q9BXA9 1300 aa27.79■■■□□ 2.04
PCDH1-204ENST00000503492 STRCQ7RTU9 1775 aa27.79■■■□□ 2.04
PCDH1-204ENST00000503492 SSH3Q8TE77 659 aa27.79■■■□□ 2.04
PCDH1-204ENST00000503492 SNX21Q969T3 373 aa27.79■■■□□ 2.04
PCDH1-204ENST00000503492 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP27.79■■■□□ 2.04
PCDH1-204ENST00000503492 CPDO75976 1380 aa27.78■■■□□ 2.04
PCDH1-204ENST00000503492 NBPF7P0C2Y1 421 aaPredicted RBP27.78■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms