RNA–Protein interactions for RNA: ENST00000502781.5

LSM6-202, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 1,352 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-202ENST00000502781 LY75O60449 1722 aa33.23■■■□□ 2.91
LSM6-202ENST00000502781 SLC27A3Q5K4L6 730 aa33.22■■■□□ 2.91
LSM6-202ENST00000502781 NUP188Q5SRE5 1749 aa33.22■■■□□ 2.91
LSM6-202ENST00000502781 LRRC4BQ9NT99 713 aa33.21■■■□□ 2.91
LSM6-202ENST00000502781 TMPOP42166 694 aaKnown RBP33.2■■■□□ 2.9
LSM6-202ENST00000502781 RTF1Q92541 710 aaKnown RBP33.2■■■□□ 2.9
LSM6-202ENST00000502781 VIRMAQ69YN4 1812 aaKnown RBP33.19■■■□□ 2.9
LSM6-202ENST00000502781 MCM10Q7L590 875 aa33.18■■■□□ 2.9
LSM6-202ENST00000502781 TEFQ10587 303 aa33.16■■■□□ 2.9
LSM6-202ENST00000502781 CCNL1Q9UK58 526 aaPredicted RBP33.16■■■□□ 2.9
LSM6-202ENST00000502781 DCTN1Q14203 1278 aa33.15■■■□□ 2.9
LSM6-202ENST00000502781 DLG5Q8TDM6 1919 aa33.15■■■□□ 2.9
LSM6-202ENST00000502781 CCER2I3L3R5 266 aa33.14■■■□□ 2.9
LSM6-202ENST00000502781 RIPK4P57078 832 aa33.14■■■□□ 2.9
LSM6-202ENST00000502781 PAPPAQ13219 1627 aa33.13■■■□□ 2.89
LSM6-202ENST00000502781 LOC102724428A0A0B4J2F2 783 aa33.13■■■□□ 2.89
LSM6-202ENST00000502781 SIK1P57059 783 aa33.13■■■□□ 2.89
LSM6-202ENST00000502781 KCNQ4P56696 695 aa33.12■■■□□ 2.89
LSM6-202ENST00000502781 ANO8Q9HCE9 1232 aaPredicted RBP33.12■■■□□ 2.89
LSM6-202ENST00000502781 SIPA1L3O60292 1781 aaPredicted RBP33.12■■■□□ 2.89
LSM6-202ENST00000502781 NBPF14Q5TI25 921 aa33.1■■■□□ 2.89
LSM6-202ENST00000502781 RRP7AQ9Y3A4 280 aaKnown RBP33.1■■■□□ 2.89
LSM6-202ENST00000502781 APAF1O14727 1248 aa33.09■■■□□ 2.89
LSM6-202ENST00000502781 SLC4A9Q96Q91 983 aa33.09■■■□□ 2.89
LSM6-202ENST00000502781 LMOD3Q0VAK6 560 aa33.09■■■□□ 2.89
LSM6-202ENST00000502781 SLC39A6Q13433 755 aa33.09■■■□□ 2.89
LSM6-202ENST00000502781 TRIM35Q9UPQ4 493 aa33.08■■■□□ 2.89
LSM6-202ENST00000502781 ZNF831Q5JPB2 1677 aa33.06■■■□□ 2.88
LSM6-202ENST00000502781 NEUROD2Q15784 382 aa33.06■■■□□ 2.88
LSM6-202ENST00000502781 AKT1S1Q96B36 256 aa33.06■■■□□ 2.88
LSM6-202ENST00000502781 THUMPD2Q9BTF0 503 aaKnown RBP33.06■■■□□ 2.88
LSM6-202ENST00000502781 HMGB2P26583 209 aaKnown RBP33.05■■■□□ 2.88
LSM6-202ENST00000502781 SLC15A2Q16348 729 aa33.05■■■□□ 2.88
LSM6-202ENST00000502781 ZNF790Q6PG37 636 aa33.05■■■□□ 2.88
LSM6-202ENST00000502781 MIER1Q8N108 512 aa33.05■■■□□ 2.88
LSM6-202ENST00000502781 RBM42Q9BTD8 480 aaKnown RBP33.05■■■□□ 2.88
LSM6-202ENST00000502781 KCPQ6ZWJ8 1503 aa33.04■■■□□ 2.88
LSM6-202ENST00000502781 PTCD1O75127 700 aaKnown RBP33.04■■■□□ 2.88
LSM6-202ENST00000502781 ATP6V1AP38606 617 aa33.04■■■□□ 2.88
LSM6-202ENST00000502781 ITPK1Q13572 414 aa33.04■■■□□ 2.88
LSM6-202ENST00000502781 TAF7Q15545 349 aaPredicted RBP33.04■■■□□ 2.88
LSM6-202ENST00000502781 BTBD11A6QL63 1104 aa33.03■■■□□ 2.88
LSM6-202ENST00000502781 R3HDM1Q15032 1099 aaKnown RBP33.03■■■□□ 2.88
LSM6-202ENST00000502781 ZNF827Q17R98 1081 aa33.03■■■□□ 2.88
LSM6-202ENST00000502781 FAM9BQ8IZU0 186 aa33.03■■■□□ 2.88
LSM6-202ENST00000502781 STK32BQ9NY57 414 aa33.02■■■□□ 2.88
LSM6-202ENST00000502781 UBR2Q8IWV8 1755 aa33■■■□□ 2.87
LSM6-202ENST00000502781 TTC5Q8N0Z6 440 aa33■■■□□ 2.87
LSM6-202ENST00000502781 TAF1LQ8IZX4 1826 aa33■■■□□ 2.87
LSM6-202ENST00000502781 C5P01031 1676 aa33■■■□□ 2.87
LSM6-202ENST00000502781 CICQ96RK0 1608 aaPredicted RBP32.99■■■□□ 2.87
LSM6-202ENST00000502781 NCBP3Q53F19 620 aaKnown RBP32.99■■■□□ 2.87
LSM6-202ENST00000502781 LINC00116Q8NCU8 138 aa32.99■■■□□ 2.87
LSM6-202ENST00000502781 PSDA5PKW4 1024 aaPredicted RBP32.98■■■□□ 2.87
LSM6-202ENST00000502781 VSIG10Q8N0Z9 540 aa32.98■■■□□ 2.87
LSM6-202ENST00000502781 ZNF496Q96IT1 587 aaPredicted RBP32.98■■■□□ 2.87
LSM6-202ENST00000502781 KCNQ3O43525 872 aa32.97■■■□□ 2.87
LSM6-202ENST00000502781 C4BP0C0L5 1744 aa32.95■■■□□ 2.86
LSM6-202ENST00000502781 CCDC27Q2M243 656 aa32.94■■■□□ 2.86
LSM6-202ENST00000502781 BABAM1Q9NWV8 329 aa32.94■■■□□ 2.86
LSM6-202ENST00000502781 MIS18AQ9NYP9 233 aa32.94■■■□□ 2.86
LSM6-202ENST00000502781 HEG1Q9ULI3 1381 aa32.93■■■□□ 2.86
LSM6-202ENST00000502781 FMNL2Q96PY5 1086 aa32.93■■■□□ 2.86
LSM6-202ENST00000502781 TJP1Q07157 1748 aa32.93■■■□□ 2.86
LSM6-202ENST00000502781 COL5A3P25940 1745 aaPredicted RBP32.91■■■□□ 2.86
LSM6-202ENST00000502781 RC3H1Q5TC82 1133 aaKnown RBP32.91■■■□□ 2.86
LSM6-202ENST00000502781 DNAJC10Q8IXB1 793 aa32.91■■■□□ 2.86
LSM6-202ENST00000502781 CNTNAP4Q9C0A0 1308 aa32.91■■■□□ 2.86
LSM6-202ENST00000502781 TFCP2L1Q9NZI6 479 aa32.9■■■□□ 2.86
LSM6-202ENST00000502781 KDM3BQ7LBC6 1761 aa32.9■■■□□ 2.86
LSM6-202ENST00000502781 PNPLA7Q6ZV29 1317 aa32.89■■■□□ 2.86
LSM6-202ENST00000502781 AK7Q96M32 723 aa32.88■■■□□ 2.85
LSM6-202ENST00000502781 CHL1O00533 1208 aa32.87■■■□□ 2.85
LSM6-202ENST00000502781 QSER1Q2KHR3 1735 aa32.87■■■□□ 2.85
LSM6-202ENST00000502781 CYP19A1P11511 503 aaPredicted RBP32.86■■■□□ 2.85
LSM6-202ENST00000502781 WWC1Q8IX03 1113 aa32.86■■■□□ 2.85
LSM6-202ENST00000502781 PDGFDQ9GZP0 370 aaPredicted RBP32.86■■■□□ 2.85
LSM6-202ENST00000502781 SENP3-EIF4A1A0A087X0R7 540 aa32.85■■■□□ 2.85
LSM6-202ENST00000502781 CRKLP46109 303 aaKnown RBP32.85■■■□□ 2.85
LSM6-202ENST00000502781 EIF4A1P60842 406 aaKnown RBP32.85■■■□□ 2.85
LSM6-202ENST00000502781 AMIGO3Q86WK7 504 aa32.85■■■□□ 2.85
LSM6-202ENST00000502781 NGEFQ8N5V2 710 aa32.85■■■□□ 2.85
LSM6-202ENST00000502781 TEX13AQ9BXU3 409 aaPredicted RBP32.85■■■□□ 2.85
LSM6-202ENST00000502781 TSPYL4Q9UJ04 414 aa32.85■■■□□ 2.85
LSM6-202ENST00000502781 TUBGCP6Q96RT7 1819 aa32.84■■■□□ 2.85
LSM6-202ENST00000502781 ZNF853P0CG23 659 aa32.84■■■□□ 2.85
LSM6-202ENST00000502781 CALD1Q05682 793 aaKnown RBP32.84■■■□□ 2.85
LSM6-202ENST00000502781 CFAP44Q96MT7 982 aa32.84■■■□□ 2.85
LSM6-202ENST00000502781 CASZ1Q86V15 1759 aa32.84■■■□□ 2.85
LSM6-202ENST00000502781 MYH14Q7Z406 1995 aaKnown RBP32.83■■■□□ 2.85
LSM6-202ENST00000502781 GNPATO15228 680 aa32.83■■■□□ 2.85
LSM6-202ENST00000502781 SNRPA1P09661 255 aaKnown RBP32.83■■■□□ 2.85
LSM6-202ENST00000502781 SSFA2P28290 1259 aa32.83■■■□□ 2.85
LSM6-202ENST00000502781 INTS5Q6P9B9 1019 aaKnown RBP32.83■■■□□ 2.85
LSM6-202ENST00000502781 UBR3Q6ZT12 1888 aa32.82■■■□□ 2.84
LSM6-202ENST00000502781 FLAD1Q8NFF5 587 aa32.82■■■□□ 2.84
LSM6-202ENST00000502781 RPS6KA4O75676 772 aa32.81■■■□□ 2.84
LSM6-202ENST00000502781 STARD3NLO95772 234 aa32.81■■■□□ 2.84
LSM6-202ENST00000502781 COL23A1Q86Y22 540 aaPredicted RBP32.81■■■□□ 2.84
LSM6-202ENST00000502781 CCDC87Q9NVE4 849 aa32.81■■■□□ 2.84
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms