RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 ARHGEF10O15013 1369 aa19.92■□□□□ 0.78
MSH5-SAPCD1-208ENST00000498473 TOM1O60784 492 aa19.92■□□□□ 0.78
MSH5-SAPCD1-208ENST00000498473 NLRP6P59044 892 aa19.91■□□□□ 0.78
MSH5-SAPCD1-208ENST00000498473 GAS2L2Q8NHY3 880 aa19.91■□□□□ 0.78
MSH5-SAPCD1-208ENST00000498473 ARXQ96QS3 562 aa19.91■□□□□ 0.78
MSH5-SAPCD1-208ENST00000498473 FOXD4L1Q9NU39 408 aa19.91■□□□□ 0.78
MSH5-SAPCD1-208ENST00000498473 MIS18AQ9NYP9 233 aa19.91■□□□□ 0.78
MSH5-SAPCD1-208ENST00000498473 PIK3C2AO00443 1686 aa19.9■□□□□ 0.78
MSH5-SAPCD1-208ENST00000498473 MTHFSDQ2M296 383 aaKnown RBP19.9■□□□□ 0.78
MSH5-SAPCD1-208ENST00000498473 SLC4A2P04920 1241 aa19.9■□□□□ 0.78
MSH5-SAPCD1-208ENST00000498473 PANK2Q9BZ23 570 aa19.9■□□□□ 0.78
MSH5-SAPCD1-208ENST00000498473 SMARCA5O60264 1052 aaPredicted RBP19.89■□□□□ 0.77
MSH5-SAPCD1-208ENST00000498473 USP26Q9BXU7 913 aa19.89■□□□□ 0.77
MSH5-SAPCD1-208ENST00000498473 G2E3Q7L622 706 aa19.88■□□□□ 0.77
MSH5-SAPCD1-208ENST00000498473 NPHP3Q7Z494 1330 aa19.88■□□□□ 0.77
MSH5-SAPCD1-208ENST00000498473 TTC21AQ8NDW8 1320 aa19.88■□□□□ 0.77
MSH5-SAPCD1-208ENST00000498473 KDRP35968 1356 aa19.88■□□□□ 0.77
MSH5-SAPCD1-208ENST00000498473 SDSP20132 328 aa19.87■□□□□ 0.77
MSH5-SAPCD1-208ENST00000498473 GBP4Q96PP9 640 aa19.87■□□□□ 0.77
MSH5-SAPCD1-208ENST00000498473 RRAGDQ9NQL2 400 aaPredicted RBP19.87■□□□□ 0.77
MSH5-SAPCD1-208ENST00000498473 KIF1AQ12756 1690 aa19.87■□□□□ 0.77
MSH5-SAPCD1-208ENST00000498473 SBNO1A3KN83 1393 aa19.86■□□□□ 0.77
MSH5-SAPCD1-208ENST00000498473 HSP90AA1P07900 732 aaKnown RBP19.86■□□□□ 0.77
MSH5-SAPCD1-208ENST00000498473 RABEP1Q15276 862 aa19.86■□□□□ 0.77
MSH5-SAPCD1-208ENST00000498473 PXDNQ92626 1479 aa19.86■□□□□ 0.77
MSH5-SAPCD1-208ENST00000498473 FLT4P35916 1363 aa19.86■□□□□ 0.77
MSH5-SAPCD1-208ENST00000498473 TRPM3Q9HCF6 1732 aaPredicted RBP19.86■□□□□ 0.77
MSH5-SAPCD1-208ENST00000498473 MRE11P49959 708 aa19.86■□□□□ 0.77
MSH5-SAPCD1-208ENST00000498473 TSPYL4Q9UJ04 414 aa19.85■□□□□ 0.77
MSH5-SAPCD1-208ENST00000498473 SSFA2P28290 1259 aa19.84■□□□□ 0.77
MSH5-SAPCD1-208ENST00000498473 CLEC17AQ6ZS10 378 aa19.84■□□□□ 0.77
MSH5-SAPCD1-208ENST00000498473 EYA1Q99502 592 aa19.84■□□□□ 0.77
MSH5-SAPCD1-208ENST00000498473 IGSF1Q8N6C5 1336 aa19.84■□□□□ 0.77
MSH5-SAPCD1-208ENST00000498473 F6X3S4 739 aa19.84■□□□□ 0.77
MSH5-SAPCD1-208ENST00000498473 APBB1O00213 710 aa19.84■□□□□ 0.77
MSH5-SAPCD1-208ENST00000498473 AK9Q5TCS8 1911 aa19.83■□□□□ 0.77
MSH5-SAPCD1-208ENST00000498473 MARF1Q9Y4F3 1742 aaKnown RBP19.83■□□□□ 0.77
MSH5-SAPCD1-208ENST00000498473 RTF1Q92541 710 aaKnown RBP19.83■□□□□ 0.76
MSH5-SAPCD1-208ENST00000498473 GRPEL1Q9HAV7 217 aa19.83■□□□□ 0.76
MSH5-SAPCD1-208ENST00000498473 LRRC37A3O60309 1634 aa19.82■□□□□ 0.76
MSH5-SAPCD1-208ENST00000498473 ZC3H6P61129 1189 aaKnown RBP19.82■□□□□ 0.76
MSH5-SAPCD1-208ENST00000498473 ZMYND15Q9H091 742 aa19.82■□□□□ 0.76
MSH5-SAPCD1-208ENST00000498473 CCT4P50991 539 aaKnown RBP19.82■□□□□ 0.76
MSH5-SAPCD1-208ENST00000498473 SKOR2Q2VWA4 1001 aaPredicted RBP19.82■□□□□ 0.76
MSH5-SAPCD1-208ENST00000498473 ISY1Q9ULR0 285 aaKnown RBP19.82■□□□□ 0.76
MSH5-SAPCD1-208ENST00000498473 PHLPP1O60346 1717 aa19.81■□□□□ 0.76
MSH5-SAPCD1-208ENST00000498473 NHSL1Q5SYE7 1610 aa19.81■□□□□ 0.76
MSH5-SAPCD1-208ENST00000498473 GAS2L3Q86XJ1 694 aa19.81■□□□□ 0.76
MSH5-SAPCD1-208ENST00000498473 SOS2Q07890 1332 aaPredicted RBP19.81■□□□□ 0.76
MSH5-SAPCD1-208ENST00000498473 PTMSP20962 102 aa19.8■□□□□ 0.76
MSH5-SAPCD1-208ENST00000498473 SLC4A10Q6U841 1118 aa19.8■□□□□ 0.76
MSH5-SAPCD1-208ENST00000498473 OSBPL3Q9H4L5 887 aa19.8■□□□□ 0.76
MSH5-SAPCD1-208ENST00000498473 SPATA31A3Q5VYP0 1347 aa19.8■□□□□ 0.76
MSH5-SAPCD1-208ENST00000498473 HMMRO75330 724 aa19.8■□□□□ 0.76
MSH5-SAPCD1-208ENST00000498473 FAM208AQ9UK61 1670 aaKnown RBP19.79■□□□□ 0.76
MSH5-SAPCD1-208ENST00000498473 TUBGCP6Q96RT7 1819 aa19.79■□□□□ 0.76
MSH5-SAPCD1-208ENST00000498473 HSPA1LP34931 641 aa19.79■□□□□ 0.76
MSH5-SAPCD1-208ENST00000498473 AMPHP49418 695 aa19.79■□□□□ 0.76
MSH5-SAPCD1-208ENST00000498473 ALS2Q96Q42 1657 aa19.79■□□□□ 0.76
MSH5-SAPCD1-208ENST00000498473 TNS3Q68CZ2 1445 aa19.78■□□□□ 0.76
MSH5-SAPCD1-208ENST00000498473 NUTM2BA6NNL0 878 aaPredicted RBP19.78■□□□□ 0.76
MSH5-SAPCD1-208ENST00000498473 NUTM2EB1AL46 878 aaPredicted RBP19.78■□□□□ 0.76
MSH5-SAPCD1-208ENST00000498473 HTATSF1O43719 755 aaKnown RBP19.78■□□□□ 0.76
MSH5-SAPCD1-208ENST00000498473 PDE1AP54750 535 aa19.78■□□□□ 0.76
MSH5-SAPCD1-208ENST00000498473 CASC1Q6TDU7 716 aa19.78■□□□□ 0.76
MSH5-SAPCD1-208ENST00000498473 NUTM2AQ8IVF1 878 aaPredicted RBP19.78■□□□□ 0.76
MSH5-SAPCD1-208ENST00000498473 BAG4O95429 457 aaKnown RBP19.77■□□□□ 0.76
MSH5-SAPCD1-208ENST00000498473 CYP2E1P05181 493 aaPredicted RBP19.77■□□□□ 0.76
MSH5-SAPCD1-208ENST00000498473 CHRNA2Q15822 529 aa19.77■□□□□ 0.76
MSH5-SAPCD1-208ENST00000498473 SALL3Q9BXA9 1300 aa19.77■□□□□ 0.76
MSH5-SAPCD1-208ENST00000498473 MED1Q15648 1581 aaPredicted RBP19.77■□□□□ 0.75
MSH5-SAPCD1-208ENST00000498473 GNAI2P04899 355 aa19.76■□□□□ 0.75
MSH5-SAPCD1-208ENST00000498473 CACNA1FO60840 1977 aa19.75■□□□□ 0.75
MSH5-SAPCD1-208ENST00000498473 GCP02774 474 aa19.75■□□□□ 0.75
MSH5-SAPCD1-208ENST00000498473 ERC2O15083 957 aa19.75■□□□□ 0.75
MSH5-SAPCD1-208ENST00000498473 LTV1Q96GA3 475 aaPredicted RBP19.75■□□□□ 0.75
MSH5-SAPCD1-208ENST00000498473 EXOC6BQ9Y2D4 811 aa19.75■□□□□ 0.75
MSH5-SAPCD1-208ENST00000498473 N4BP2Q86UW6 1770 aaPredicted RBP19.75■□□□□ 0.75
MSH5-SAPCD1-208ENST00000498473 REC8O95072 547 aa19.74■□□□□ 0.75
MSH5-SAPCD1-208ENST00000498473 FLIIQ13045 1269 aa19.74■□□□□ 0.75
MSH5-SAPCD1-208ENST00000498473 STK31Q9BXU1 1019 aa19.74■□□□□ 0.75
MSH5-SAPCD1-208ENST00000498473 GNAT3A8MTJ3 354 aa19.74■□□□□ 0.75
MSH5-SAPCD1-208ENST00000498473 HOXC9P31274 260 aa19.74■□□□□ 0.75
MSH5-SAPCD1-208ENST00000498473 COL16A1Q07092 1604 aaPredicted RBP19.73■□□□□ 0.75
MSH5-SAPCD1-208ENST00000498473 USP54Q70EL1 1684 aa19.73■□□□□ 0.75
MSH5-SAPCD1-208ENST00000498473 ADAMTS2O95450 1211 aa19.72■□□□□ 0.75
MSH5-SAPCD1-208ENST00000498473 NUCB2P80303 420 aa19.72■□□□□ 0.75
MSH5-SAPCD1-208ENST00000498473 CCDC30Q5VVM6 783 aa19.72■□□□□ 0.75
MSH5-SAPCD1-208ENST00000498473 IL17REQ8NFR9 667 aa19.72■□□□□ 0.75
MSH5-SAPCD1-208ENST00000498473 PNMA6EA0A0J9YXQ4 647 aa19.72■□□□□ 0.75
MSH5-SAPCD1-208ENST00000498473 ATP8B2P98198 1209 aa19.72■□□□□ 0.75
MSH5-SAPCD1-208ENST00000498473 PKP1Q13835 747 aa19.72■□□□□ 0.75
MSH5-SAPCD1-208ENST00000498473 VSIG10Q8N0Z9 540 aa19.72■□□□□ 0.75
MSH5-SAPCD1-208ENST00000498473 LTN1O94822 1766 aa19.72■□□□□ 0.75
MSH5-SAPCD1-208ENST00000498473 GOLGA6L22H0YM25 854 aa19.71■□□□□ 0.75
MSH5-SAPCD1-208ENST00000498473 ST18O60284 1047 aa19.71■□□□□ 0.75
MSH5-SAPCD1-208ENST00000498473 KLHL40Q2TBA0 621 aa19.71■□□□□ 0.75
MSH5-SAPCD1-208ENST00000498473 LRRC59Q96AG4 307 aaKnown RBP19.71■□□□□ 0.75
MSH5-SAPCD1-208ENST00000498473 AHDC1Q5TGY3 1603 aaPredicted RBP19.71■□□□□ 0.75
MSH5-SAPCD1-208ENST00000498473 GNAI3P08754 354 aa19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 142.6 ms