RNA–Protein interactions for RNA: ENST00000496653.4

LIMS1-213, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 4

Gene LIMS1, Length 626 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-213ENST00000496653 ATG3Q9NT62 314 aa19.3■□□□□ 0.68
LIMS1-213ENST00000496653 ASAP1Q9ULH1 1129 aa19.3■□□□□ 0.68
LIMS1-213ENST00000496653 TTC5Q8N0Z6 440 aa19.29■□□□□ 0.68
LIMS1-213ENST00000496653 ADAMTS8Q9UP79 889 aa19.29■□□□□ 0.68
LIMS1-213ENST00000496653 KAT6BQ8WYB5 2073 aa19.29■□□□□ 0.68
LIMS1-213ENST00000496653 ITGB4P16144 1822 aa19.28■□□□□ 0.68
LIMS1-213ENST00000496653 R3HDM1Q15032 1099 aaKnown RBP19.28■□□□□ 0.68
LIMS1-213ENST00000496653 IL17REQ8NFR9 667 aa19.28■□□□□ 0.68
LIMS1-213ENST00000496653 LRRC4BQ9NT99 713 aa19.28■□□□□ 0.68
LIMS1-213ENST00000496653 SCN11AQ9UI33 1791 aa19.28■□□□□ 0.68
LIMS1-213ENST00000496653 LY75O60449 1722 aa19.28■□□□□ 0.68
LIMS1-213ENST00000496653 SLC15A2Q16348 729 aa19.27■□□□□ 0.68
LIMS1-213ENST00000496653 PAPPAQ13219 1627 aa19.26■□□□□ 0.67
LIMS1-213ENST00000496653 PNISRQ8TF01 805 aaKnown RBP19.26■□□□□ 0.67
LIMS1-213ENST00000496653 ANO8Q9HCE9 1232 aaPredicted RBP19.26■□□□□ 0.67
LIMS1-213ENST00000496653 ATP6V1AP38606 617 aa19.25■□□□□ 0.67
LIMS1-213ENST00000496653 TMPOP42166 694 aaKnown RBP19.25■□□□□ 0.67
LIMS1-213ENST00000496653 RBM42Q9BTD8 480 aaKnown RBP19.25■□□□□ 0.67
LIMS1-213ENST00000496653 RIPK4P57078 832 aa19.24■□□□□ 0.67
LIMS1-213ENST00000496653 MCM10Q7L590 875 aa19.24■□□□□ 0.67
LIMS1-213ENST00000496653 CCDC146Q8IYE0 955 aa19.24■□□□□ 0.67
LIMS1-213ENST00000496653 FLAD1Q8NFF5 587 aa19.24■□□□□ 0.67
LIMS1-213ENST00000496653 AK7Q96M32 723 aa19.24■□□□□ 0.67
LIMS1-213ENST00000496653 BTBD11A6QL63 1104 aa19.23■□□□□ 0.67
LIMS1-213ENST00000496653 PTCD1O75127 700 aaKnown RBP19.23■□□□□ 0.67
LIMS1-213ENST00000496653 ZNF790Q6PG37 636 aa19.23■□□□□ 0.67
LIMS1-213ENST00000496653 VSIG10Q8N0Z9 540 aa19.23■□□□□ 0.67
LIMS1-213ENST00000496653 AKT1S1Q96B36 256 aa19.23■□□□□ 0.67
LIMS1-213ENST00000496653 TFCP2L1Q9NZI6 479 aa19.23■□□□□ 0.67
LIMS1-213ENST00000496653 ZNF831Q5JPB2 1677 aa19.23■□□□□ 0.67
LIMS1-213ENST00000496653 PSDA5PKW4 1024 aaPredicted RBP19.22■□□□□ 0.67
LIMS1-213ENST00000496653 CALD1Q05682 793 aaKnown RBP19.22■□□□□ 0.67
LIMS1-213ENST00000496653 CCER2I3L3R5 266 aa19.21■□□□□ 0.67
LIMS1-213ENST00000496653 TAF7Q15545 349 aaPredicted RBP19.21■□□□□ 0.67
LIMS1-213ENST00000496653 DIEXFQ68CQ4 756 aaKnown RBP19.21■□□□□ 0.67
LIMS1-213ENST00000496653 ZNF827Q17R98 1081 aa19.2■□□□□ 0.66
LIMS1-213ENST00000496653 CCDC184Q52MB2 194 aa19.2■□□□□ 0.66
LIMS1-213ENST00000496653 FMNL2Q96PY5 1086 aa19.2■□□□□ 0.66
LIMS1-213ENST00000496653 TEX13AQ9BXU3 409 aaPredicted RBP19.2■□□□□ 0.66
LIMS1-213ENST00000496653 BABAM1Q9NWV8 329 aa19.2■□□□□ 0.66
LIMS1-213ENST00000496653 CNTNAP4Q9C0A0 1308 aa19.2■□□□□ 0.66
LIMS1-213ENST00000496653 KCNQ4P56696 695 aa19.19■□□□□ 0.66
LIMS1-213ENST00000496653 DCTN1Q14203 1278 aa19.19■□□□□ 0.66
LIMS1-213ENST00000496653 RC3H1Q5TC82 1133 aaKnown RBP19.19■□□□□ 0.66
LIMS1-213ENST00000496653 C5P01031 1676 aa19.19■□□□□ 0.66
LIMS1-213ENST00000496653 CICQ96RK0 1608 aaPredicted RBP19.18■□□□□ 0.66
LIMS1-213ENST00000496653 SSFA2P28290 1259 aa19.18■□□□□ 0.66
LIMS1-213ENST00000496653 SLC39A6Q13433 755 aa19.18■□□□□ 0.66
LIMS1-213ENST00000496653 ITPK1Q13572 414 aa19.18■□□□□ 0.66
LIMS1-213ENST00000496653 NCBP3Q53F19 620 aaKnown RBP19.18■□□□□ 0.66
LIMS1-213ENST00000496653 NGEFQ8N5V2 710 aa19.18■□□□□ 0.66
LIMS1-213ENST00000496653 LINC00116Q8NCU8 138 aa19.18■□□□□ 0.66
LIMS1-213ENST00000496653 SLC16A10Q8TF71 515 aa19.18■□□□□ 0.66
LIMS1-213ENST00000496653 KCPQ6ZWJ8 1503 aa19.18■□□□□ 0.66
LIMS1-213ENST00000496653 APAF1O14727 1248 aa19.17■□□□□ 0.66
LIMS1-213ENST00000496653 STARD3NLO95772 234 aa19.17■□□□□ 0.66
LIMS1-213ENST00000496653 HEG1Q9ULI3 1381 aa19.17■□□□□ 0.66
LIMS1-213ENST00000496653 C4BP0C0L5 1744 aa19.17■□□□□ 0.66
LIMS1-213ENST00000496653 ADRA2BP18089 450 aa19.16■□□□□ 0.66
LIMS1-213ENST00000496653 NEUROD2Q15784 382 aa19.16■□□□□ 0.66
LIMS1-213ENST00000496653 RRP7AQ9Y3A4 280 aaKnown RBP19.16■□□□□ 0.66
LIMS1-213ENST00000496653 GNPATO15228 680 aa19.15■□□□□ 0.66
LIMS1-213ENST00000496653 ZNF496Q96IT1 587 aaPredicted RBP19.15■□□□□ 0.66
LIMS1-213ENST00000496653 RTCBQ9Y3I0 505 aaKnown RBP19.15■□□□□ 0.66
LIMS1-213ENST00000496653 SIPA1L3O60292 1781 aaPredicted RBP19.14■□□□□ 0.66
LIMS1-213ENST00000496653 SLC4A9Q96Q91 983 aa19.14■□□□□ 0.65
LIMS1-213ENST00000496653 MTFR1LQ9H019 292 aa19.14■□□□□ 0.65
LIMS1-213ENST00000496653 SPON1Q9HCB6 807 aa19.14■□□□□ 0.65
LIMS1-213ENST00000496653 PNPLA7Q6ZV29 1317 aa19.14■□□□□ 0.65
LIMS1-213ENST00000496653 SNRPA1P09661 255 aaKnown RBP19.13■□□□□ 0.65
LIMS1-213ENST00000496653 CRKLP46109 303 aaKnown RBP19.13■□□□□ 0.65
LIMS1-213ENST00000496653 CCDC27Q2M243 656 aa19.13■□□□□ 0.65
LIMS1-213ENST00000496653 FAM9BQ8IZU0 186 aa19.13■□□□□ 0.65
LIMS1-213ENST00000496653 THUMPD2Q9BTF0 503 aaKnown RBP19.13■□□□□ 0.65
LIMS1-213ENST00000496653 CCDC87Q9NVE4 849 aa19.13■□□□□ 0.65
LIMS1-213ENST00000496653 TSPYL4Q9UJ04 414 aa19.13■□□□□ 0.65
LIMS1-213ENST00000496653 UBR2Q8IWV8 1755 aa19.12■□□□□ 0.65
LIMS1-213ENST00000496653 QSER1Q2KHR3 1735 aa19.12■□□□□ 0.65
LIMS1-213ENST00000496653 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.12■□□□□ 0.65
LIMS1-213ENST00000496653 DNAJC10Q8IXB1 793 aa19.12■□□□□ 0.65
LIMS1-213ENST00000496653 TRIM35Q9UPQ4 493 aa19.12■□□□□ 0.65
LIMS1-213ENST00000496653 MSH5O43196 834 aa19.11■□□□□ 0.65
LIMS1-213ENST00000496653 RPS6KA4O75676 772 aa19.11■□□□□ 0.65
LIMS1-213ENST00000496653 CYP19A1P11511 503 aaPredicted RBP19.11■□□□□ 0.65
LIMS1-213ENST00000496653 LRP5O75197 1615 aa19.11■□□□□ 0.65
LIMS1-213ENST00000496653 VIRMAQ69YN4 1812 aaKnown RBP19.1■□□□□ 0.65
LIMS1-213ENST00000496653 TAF1LQ8IZX4 1826 aa19.1■□□□□ 0.65
LIMS1-213ENST00000496653 NPM2Q86SE8 214 aaKnown RBP19.1■□□□□ 0.65
LIMS1-213ENST00000496653 CASZ1Q86V15 1759 aa19.09■□□□□ 0.65
LIMS1-213ENST00000496653 PHF14O94880 888 aa19.09■□□□□ 0.65
LIMS1-213ENST00000496653 TRAPPC3LQ5T215 181 aa19.09■□□□□ 0.65
LIMS1-213ENST00000496653 IFT57Q9NWB7 429 aa19.09■□□□□ 0.65
LIMS1-213ENST00000496653 DLG5Q8TDM6 1919 aa19.09■□□□□ 0.65
LIMS1-213ENST00000496653 COL5A3P25940 1745 aaPredicted RBP19.08■□□□□ 0.65
LIMS1-213ENST00000496653 TJP1Q07157 1748 aa19.08■□□□□ 0.65
LIMS1-213ENST00000496653 GNAI1P63096 354 aa19.08■□□□□ 0.64
LIMS1-213ENST00000496653 COL23A1Q86Y22 540 aaPredicted RBP19.08■□□□□ 0.64
LIMS1-213ENST00000496653 CFAP44Q96MT7 982 aa19.08■□□□□ 0.64
LIMS1-213ENST00000496653 CHL1O00533 1208 aa19.07■□□□□ 0.64
LIMS1-213ENST00000496653 ZBTB7AO95365 584 aa19.07■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms