RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 SDSP20132 328 aa20.4■□□□□ 0.86
CCDC88B-210ENST00000494566 PKP1Q13835 747 aa20.4■□□□□ 0.86
CCDC88B-210ENST00000494566 FOXD4L6Q3SYB3 417 aaPredicted RBP20.4■□□□□ 0.86
CCDC88B-210ENST00000494566 LMOD2Q6P5Q4 547 aa20.4■□□□□ 0.86
CCDC88B-210ENST00000494566 FOXD4L3Q6VB84 417 aaPredicted RBP20.4■□□□□ 0.86
CCDC88B-210ENST00000494566 LRRC59Q96AG4 307 aaKnown RBP20.4■□□□□ 0.86
CCDC88B-210ENST00000494566 MARF1Q9Y4F3 1742 aaKnown RBP20.4■□□□□ 0.86
CCDC88B-210ENST00000494566 NBPF6Q5VWK0 638 aa20.39■□□□□ 0.85
CCDC88B-210ENST00000494566 NBPF4Q96M43 638 aa20.39■□□□□ 0.85
CCDC88B-210ENST00000494566 EIF2S2P20042 333 aaKnown RBP20.38■□□□□ 0.85
CCDC88B-210ENST00000494566 PHAXQ9H814 394 aaKnown RBP20.38■□□□□ 0.85
CCDC88B-210ENST00000494566 LGR6Q9HBX8 967 aa20.38■□□□□ 0.85
CCDC88B-210ENST00000494566 NWD1Q149M9 1564 aa20.38■□□□□ 0.85
CCDC88B-210ENST00000494566 MAP3K5Q99683 1374 aa20.38■□□□□ 0.85
CCDC88B-210ENST00000494566 PNMA6EA0A0J9YXQ4 647 aa20.37■□□□□ 0.85
CCDC88B-210ENST00000494566 PSME1Q06323 249 aa20.37■□□□□ 0.85
CCDC88B-210ENST00000494566 TRIM44Q96DX7 344 aaPredicted RBP20.37■□□□□ 0.85
CCDC88B-210ENST00000494566 DDX11L8A8MPP1 907 aa20.37■□□□□ 0.85
CCDC88B-210ENST00000494566 MRE11P49959 708 aa20.37■□□□□ 0.85
CCDC88B-210ENST00000494566 SNX21Q969T3 373 aa20.37■□□□□ 0.85
CCDC88B-210ENST00000494566 ANKARQ7Z5J8 1434 aa20.36■□□□□ 0.85
CCDC88B-210ENST00000494566 CCT4P50991 539 aaKnown RBP20.36■□□□□ 0.85
CCDC88B-210ENST00000494566 CCDC30Q5VVM6 783 aa20.36■□□□□ 0.85
CCDC88B-210ENST00000494566 ANKLE2Q86XL3 938 aa20.36■□□□□ 0.85
CCDC88B-210ENST00000494566 ANXA1P04083 346 aa20.36■□□□□ 0.85
CCDC88B-210ENST00000494566 MCTP1Q6DN14 999 aa20.36■□□□□ 0.85
CCDC88B-210ENST00000494566 KCNQ3O43525 872 aa20.35■□□□□ 0.85
CCDC88B-210ENST00000494566 TAF7Q15545 349 aaPredicted RBP20.35■□□□□ 0.85
CCDC88B-210ENST00000494566 ORAI2Q96SN7 254 aa20.35■□□□□ 0.85
CCDC88B-210ENST00000494566 DDX49Q9Y6V7 483 aaKnown RBP20.35■□□□□ 0.85
CCDC88B-210ENST00000494566 GNAI2P04899 355 aa20.35■□□□□ 0.85
CCDC88B-210ENST00000494566 K7ELQ4 463 aaPredicted RBP20.34■□□□□ 0.85
CCDC88B-210ENST00000494566 HDGFL1Q5TGJ6 251 aa20.34■□□□□ 0.85
CCDC88B-210ENST00000494566 GBP4Q96PP9 640 aa20.34■□□□□ 0.85
CCDC88B-210ENST00000494566 LRRFIP2Q9Y608 721 aaKnown RBP20.34■□□□□ 0.85
CCDC88B-210ENST00000494566 DTNBO60941 627 aa20.33■□□□□ 0.84
CCDC88B-210ENST00000494566 HMMRO75330 724 aa20.33■□□□□ 0.84
CCDC88B-210ENST00000494566 DDIT3P35638 169 aa20.33■□□□□ 0.84
CCDC88B-210ENST00000494566 LTN1O94822 1766 aa20.32■□□□□ 0.84
CCDC88B-210ENST00000494566 NCOA3Q9Y6Q9 1424 aa20.32■□□□□ 0.84
CCDC88B-210ENST00000494566 MPRIPQ6WCQ1 1025 aa20.32■□□□□ 0.84
CCDC88B-210ENST00000494566 USP26Q9BXU7 913 aa20.31■□□□□ 0.84
CCDC88B-210ENST00000494566 RAB3GAP1Q15042 981 aa20.31■□□□□ 0.84
CCDC88B-210ENST00000494566 ZGPATQ8N5A5 531 aaKnown RBP20.31■□□□□ 0.84
CCDC88B-210ENST00000494566 IP6K1Q92551 441 aa20.31■□□□□ 0.84
CCDC88B-210ENST00000494566 ESPNB1AK53 854 aa20.3■□□□□ 0.84
CCDC88B-210ENST00000494566 HTATSF1O43719 755 aaKnown RBP20.3■□□□□ 0.84
CCDC88B-210ENST00000494566 PDE1AP54750 535 aa20.3■□□□□ 0.84
CCDC88B-210ENST00000494566 ARID3AQ99856 593 aa20.3■□□□□ 0.84
CCDC88B-210ENST00000494566 CAVIN1Q6NZI2 390 aaKnown RBP20.3■□□□□ 0.84
CCDC88B-210ENST00000494566 RBM27Q9P2N5 1060 aaKnown RBP20.3■□□□□ 0.84
CCDC88B-210ENST00000494566 RGPD2P0DJD1 1756 aa20.3■□□□□ 0.84
CCDC88B-210ENST00000494566 MPNDQ8N594 471 aa20.29■□□□□ 0.84
CCDC88B-210ENST00000494566 IL1RAPL2Q9NP60 686 aa20.29■□□□□ 0.84
CCDC88B-210ENST00000494566 FAM208AQ9UK61 1670 aaKnown RBP20.29■□□□□ 0.84
CCDC88B-210ENST00000494566 USP44Q9H0E7 712 aa20.28■□□□□ 0.84
CCDC88B-210ENST00000494566 LRRC37A3O60309 1634 aa20.28■□□□□ 0.84
CCDC88B-210ENST00000494566 CHPF2Q9P2E5 772 aa20.28■□□□□ 0.84
CCDC88B-210ENST00000494566 CHD2O14647 1828 aaKnown RBP20.27■□□□□ 0.84
CCDC88B-210ENST00000494566 ZNF530Q6P9A1 599 aaPredicted RBP20.27■□□□□ 0.84
CCDC88B-210ENST00000494566 RILPL2Q969X0 211 aa20.26■□□□□ 0.83
CCDC88B-210ENST00000494566 BAG4O95429 457 aaKnown RBP20.26■□□□□ 0.83
CCDC88B-210ENST00000494566 LRRCC1Q9C099 1032 aa20.26■□□□□ 0.83
CCDC88B-210ENST00000494566 GNAI3P08754 354 aa20.26■□□□□ 0.83
CCDC88B-210ENST00000494566 UBTFL1P0CB47 393 aaPredicted RBP20.25■□□□□ 0.83
CCDC88B-210ENST00000494566 CLCN1P35523 988 aa20.25■□□□□ 0.83
CCDC88B-210ENST00000494566 TRIM6-TRIM34B2RNG4 842 aa20.25■□□□□ 0.83
CCDC88B-210ENST00000494566 MAP4K4O95819 1239 aaPredicted RBP20.25■□□□□ 0.83
CCDC88B-210ENST00000494566 GCP02774 474 aa20.24■□□□□ 0.83
CCDC88B-210ENST00000494566 EIF4A1P60842 406 aaKnown RBP20.24■□□□□ 0.83
CCDC88B-210ENST00000494566 ATP8B2P98198 1209 aa20.24■□□□□ 0.83
CCDC88B-210ENST00000494566 CASC1Q6TDU7 716 aa20.24■□□□□ 0.83
CCDC88B-210ENST00000494566 PRAMEF22A3QJZ6 481 aa20.24■□□□□ 0.83
CCDC88B-210ENST00000494566 PRPF40AO75400 957 aaKnown RBP20.24■□□□□ 0.83
CCDC88B-210ENST00000494566 NUTM1Q86Y26 1132 aa20.24■□□□□ 0.83
CCDC88B-210ENST00000494566 UNC5CLQ8IV45 518 aa20.24■□□□□ 0.83
CCDC88B-210ENST00000494566 NBPF7P0C2Y1 421 aaPredicted RBP20.23■□□□□ 0.83
CCDC88B-210ENST00000494566 NASPP49321 788 aaPredicted RBP20.23■□□□□ 0.83
CCDC88B-210ENST00000494566 TEFQ10587 303 aa20.23■□□□□ 0.83
CCDC88B-210ENST00000494566 PI4KAP2A4QPH2 592 aa20.23■□□□□ 0.83
CCDC88B-210ENST00000494566 NFAT5O94916 1531 aa20.23■□□□□ 0.83
CCDC88B-210ENST00000494566 MX1P20591 662 aa20.23■□□□□ 0.83
CCDC88B-210ENST00000494566 PI4KAP1Q8N8J0 262 aa20.23■□□□□ 0.83
CCDC88B-210ENST00000494566 AXIN2Q9Y2T1 843 aa20.23■□□□□ 0.83
CCDC88B-210ENST00000494566 BTBD11A6QL63 1104 aa20.23■□□□□ 0.83
CCDC88B-210ENST00000494566 RABEP1Q15276 862 aa20.22■□□□□ 0.83
CCDC88B-210ENST00000494566 DDX17Q92841 729 aaKnown RBP20.22■□□□□ 0.83
CCDC88B-210ENST00000494566 RNF214Q8ND24 703 aa20.22■□□□□ 0.83
CCDC88B-210ENST00000494566 UBE2Q2Q8WVN8 375 aa20.22■□□□□ 0.83
CCDC88B-210ENST00000494566 PPP1R42Q7Z4L9 355 aa20.21■□□□□ 0.83
CCDC88B-210ENST00000494566 CEMIPQ8WUJ3 1361 aa20.21■□□□□ 0.83
CCDC88B-210ENST00000494566 GOLGA6L22H0YM25 854 aa20.21■□□□□ 0.83
CCDC88B-210ENST00000494566 ERC2O15083 957 aa20.21■□□□□ 0.83
CCDC88B-210ENST00000494566 ZC3H6P61129 1189 aaKnown RBP20.21■□□□□ 0.83
CCDC88B-210ENST00000494566 ADGRL3Q9HAR2 1447 aa20.21■□□□□ 0.83
CCDC88B-210ENST00000494566 PXDNQ92626 1479 aa20.2■□□□□ 0.82
CCDC88B-210ENST00000494566 SRCIN1Q9C0H9 1055 aa20.2■□□□□ 0.82
CCDC88B-210ENST00000494566 IBTKQ9P2D0 1353 aaPredicted RBP20.2■□□□□ 0.82
CCDC88B-210ENST00000494566 SALL3Q9BXA9 1300 aa20.2■□□□□ 0.82
CCDC88B-210ENST00000494566 SURF6O75683 361 aaKnown RBP20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms