RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 DCTN1Q14203 1278 aa14.04□□□□□ -0.16
HDAC4-210ENST00000493582 RTL1A6NKG5 1358 aa14.03□□□□□ -0.16
HDAC4-210ENST00000493582 RPAP1Q9BWH6 1393 aaPredicted RBP14.03□□□□□ -0.16
HDAC4-210ENST00000493582 NRXN1Q9ULB1 1477 aa14.03□□□□□ -0.16
HDAC4-210ENST00000493582 SMTNL1A8MU46 457 aa14.03□□□□□ -0.16
HDAC4-210ENST00000493582 ZNF853P0CG23 659 aa14.03□□□□□ -0.16
HDAC4-210ENST00000493582 ZSCAN22P10073 491 aaPredicted RBP14.03□□□□□ -0.16
HDAC4-210ENST00000493582 ZNF592Q92610 1267 aa14.03□□□□□ -0.16
HDAC4-210ENST00000493582 VWDEQ8N2E2 1590 aa14.02□□□□□ -0.16
HDAC4-210ENST00000493582 TRIM6-TRIM34B2RNG4 842 aa14.02□□□□□ -0.16
HDAC4-210ENST00000493582 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.02□□□□□ -0.16
HDAC4-210ENST00000493582 CHMP3Q9Y3E7 222 aa14.02□□□□□ -0.16
HDAC4-210ENST00000493582 V9GYY5 206 aaPredicted RBP14.02□□□□□ -0.16
HDAC4-210ENST00000493582 INO80Q9ULG1 1556 aaPredicted RBP14.02□□□□□ -0.16
HDAC4-210ENST00000493582 DRC7Q8IY82 874 aa14.02□□□□□ -0.17
HDAC4-210ENST00000493582 CCDC112Q8NEF3 446 aa14.02□□□□□ -0.17
HDAC4-210ENST00000493582 SYT1P21579 422 aa14.02□□□□□ -0.17
HDAC4-210ENST00000493582 LUZP1Q86V48 1076 aa14.02□□□□□ -0.17
HDAC4-210ENST00000493582 STK26Q9P289 416 aa14.02□□□□□ -0.17
HDAC4-210ENST00000493582 EXOC6BQ9Y2D4 811 aa14.01□□□□□ -0.17
HDAC4-210ENST00000493582 LRRC7Q96NW7 1537 aa14.01□□□□□ -0.17
HDAC4-210ENST00000493582 STX6O43752 255 aa14.01□□□□□ -0.17
HDAC4-210ENST00000493582 DNM1Q05193 864 aaKnown RBP14.01□□□□□ -0.17
HDAC4-210ENST00000493582 ST7Q9NRC1 585 aa14.01□□□□□ -0.17
HDAC4-210ENST00000493582 TULP4Q9NRJ4 1543 aa14□□□□□ -0.17
HDAC4-210ENST00000493582 CCDC66A2RUB6 948 aa14□□□□□ -0.17
HDAC4-210ENST00000493582 PDIA4P13667 645 aaKnown RBP14□□□□□ -0.17
HDAC4-210ENST00000493582 CHMLP26374 656 aa14□□□□□ -0.17
HDAC4-210ENST00000493582 ANAPC15P60006 121 aa14□□□□□ -0.17
HDAC4-210ENST00000493582 SYCP1Q15431 976 aa14□□□□□ -0.17
HDAC4-210ENST00000493582 CAMK4Q16566 473 aa14□□□□□ -0.17
HDAC4-210ENST00000493582 IL25Q9H293 177 aa14□□□□□ -0.17
HDAC4-210ENST00000493582 OSBPL3Q9H4L5 887 aa14□□□□□ -0.17
HDAC4-210ENST00000493582 RGS12O14924 1447 aa14□□□□□ -0.17
HDAC4-210ENST00000493582 KMT5BQ4FZB7 885 aa14□□□□□ -0.17
HDAC4-210ENST00000493582 KRT222Q8N1A0 295 aa14□□□□□ -0.17
HDAC4-210ENST00000493582 TIGD1Q96MW7 591 aa14□□□□□ -0.17
HDAC4-210ENST00000493582 TRERF1Q96PN7 1200 aa14□□□□□ -0.17
HDAC4-210ENST00000493582 MSH6P52701 1360 aa14□□□□□ -0.17
HDAC4-210ENST00000493582 PNPLA6Q8IY17 1366 aa14□□□□□ -0.17
HDAC4-210ENST00000493582 CCDC192P0DO97 292 aa13.99□□□□□ -0.17
HDAC4-210ENST00000493582 FAM135BQ49AJ0 1406 aa13.99□□□□□ -0.17
HDAC4-210ENST00000493582 PUS7Q96PZ0 661 aaKnown RBP13.99□□□□□ -0.17
HDAC4-210ENST00000493582 ADGRB1O14514 1584 aa13.99□□□□□ -0.17
HDAC4-210ENST00000493582 F13A1P00488 732 aa13.99□□□□□ -0.17
HDAC4-210ENST00000493582 TPD52L1Q16890 204 aaPredicted RBP13.99□□□□□ -0.17
HDAC4-210ENST00000493582 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.99□□□□□ -0.17
HDAC4-210ENST00000493582 SETBP1Q9Y6X0 1596 aa13.99□□□□□ -0.17
HDAC4-210ENST00000493582 UNC5CLQ8IV45 518 aa13.99□□□□□ -0.17
HDAC4-210ENST00000493582 ARHGEF40Q8TER5 1519 aa13.98□□□□□ -0.17
HDAC4-210ENST00000493582 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.98□□□□□ -0.171e-6■■□□□ 14.1
HDAC4-210ENST00000493582 KIF24Q5T7B8 1368 aa13.98□□□□□ -0.17
HDAC4-210ENST00000493582 ZSCAN25Q6NSZ9 544 aa13.98□□□□□ -0.17
HDAC4-210ENST00000493582 TERF2IPQ9NYB0 399 aa13.98□□□□□ -0.17
HDAC4-210ENST00000493582 POLKQ9UBT6 870 aa13.98□□□□□ -0.17
HDAC4-210ENST00000493582 PAXBP1Q9Y5B6 917 aa13.98□□□□□ -0.17
HDAC4-210ENST00000493582 YEATS2Q9ULM3 1422 aa13.98□□□□□ -0.17
HDAC4-210ENST00000493582 FAM200AQ8TCP9 573 aa13.97□□□□□ -0.17
HDAC4-210ENST00000493582 TRIM5Q9C035 493 aa13.97□□□□□ -0.17
HDAC4-210ENST00000493582 ZNF215Q9UL58 517 aaPredicted RBP13.97□□□□□ -0.17
HDAC4-210ENST00000493582 NPHP1O15259 732 aa13.97□□□□□ -0.17
HDAC4-210ENST00000493582 CAPN2P17655 700 aa13.97□□□□□ -0.17
HDAC4-210ENST00000493582 SLC4A10Q6U841 1118 aa13.97□□□□□ -0.17
HDAC4-210ENST00000493582 CKAP2LQ8IYA6 745 aa13.97□□□□□ -0.17
HDAC4-210ENST00000493582 MINK1Q8N4C8 1332 aaPredicted RBP13.97□□□□□ -0.17
HDAC4-210ENST00000493582 MROH1Q8NDA8 1641 aa13.96□□□□□ -0.17
HDAC4-210ENST00000493582 RTF1Q92541 710 aaKnown RBP13.96□□□□□ -0.17
HDAC4-210ENST00000493582 SMC3Q9UQE7 1217 aa13.96□□□□□ -0.17
HDAC4-210ENST00000493582 HMMRO75330 724 aa13.96□□□□□ -0.17
HDAC4-210ENST00000493582 RBM6P78332 1123 aaKnown RBP13.96□□□□□ -0.17
HDAC4-210ENST00000493582 CACTINQ8WUQ7 758 aaKnown RBP13.96□□□□□ -0.17
HDAC4-210ENST00000493582 MRVI1Q9Y6F6 885 aa13.96□□□□□ -0.17
HDAC4-210ENST00000493582 ERCC6L2Q5T890 1561 aa13.96□□□□□ -0.18
HDAC4-210ENST00000493582 ZCCHC11Q5TAX3 1644 aaKnown RBP13.96□□□□□ -0.18
HDAC4-210ENST00000493582 CPA1P15085 419 aa13.95□□□□□ -0.18
HDAC4-210ENST00000493582 AK2P54819 239 aa13.95□□□□□ -0.18
HDAC4-210ENST00000493582 CEP135Q66GS9 1140 aa13.95□□□□□ -0.18
HDAC4-210ENST00000493582 TYRO3Q06418 890 aa13.95□□□□□ -0.18
HDAC4-210ENST00000493582 ZNF397Q8NF99 534 aaPredicted RBP13.95□□□□□ -0.18
HDAC4-210ENST00000493582 CHMP4AQ9BY43 222 aa13.95□□□□□ -0.18
HDAC4-210ENST00000493582 FBXO38Q6PIJ6 1188 aa13.95□□□□□ -0.18
HDAC4-210ENST00000493582 ATP6V1DQ9Y5K8 247 aa13.95□□□□□ -0.18
HDAC4-210ENST00000493582 USP27XA6NNY8 438 aa13.94□□□□□ -0.18
HDAC4-210ENST00000493582 F6X3S4 739 aa13.94□□□□□ -0.18
HDAC4-210ENST00000493582 RUFY3Q7L099 469 aa13.94□□□□□ -0.18
HDAC4-210ENST00000493582 DNAJC2Q99543 621 aaKnown RBP13.94□□□□□ -0.18
HDAC4-210ENST00000493582 CBX8Q9HC52 389 aa13.94□□□□□ -0.18
HDAC4-210ENST00000493582 EMILIN1Q9Y6C2 1016 aa13.94□□□□□ -0.18
HDAC4-210ENST00000493582 HSPA4P34932 840 aa13.94□□□□□ -0.18
HDAC4-210ENST00000493582 ELF2Q15723 593 aa13.94□□□□□ -0.18
HDAC4-210ENST00000493582 ANO6Q4KMQ2 910 aa13.94□□□□□ -0.18
HDAC4-210ENST00000493582 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.94□□□□□ -0.18
HDAC4-210ENST00000493582 CHD1O14646 1710 aa13.94□□□□□ -0.18
HDAC4-210ENST00000493582 LARGE1O95461 756 aa13.93□□□□□ -0.18
HDAC4-210ENST00000493582 MAP4K4O95819 1239 aaPredicted RBP13.93□□□□□ -0.18
HDAC4-210ENST00000493582 LIG1P18858 919 aa13.93□□□□□ -0.18
HDAC4-210ENST00000493582 CCDC144BQ3MJ40 725 aa13.93□□□□□ -0.18
HDAC4-210ENST00000493582 CCDC144CPQ8IYA2 1237 aa13.93□□□□□ -0.18
HDAC4-210ENST00000493582 ATP7AQ04656 1500 aa13.93□□□□□ -0.18
HDAC4-210ENST00000493582 VPS37CA5D8V6 355 aaPredicted RBP13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms