RNA–Protein interactions for RNA: ENST00000493455.6

HPS4-216, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 986 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-216ENST00000493455 CCDC27Q2M243 656 aa20.58■□□□□ 0.89
HPS4-216ENST00000493455 PIGBQ92521 554 aa20.58■□□□□ 0.89
HPS4-216ENST00000493455 BCL9O00512 1426 aa20.58■□□□□ 0.88
HPS4-216ENST00000493455 BTBD11A6QL63 1104 aa20.57■□□□□ 0.88
HPS4-216ENST00000493455 SLC39A6Q13433 755 aa20.57■□□□□ 0.88
HPS4-216ENST00000493455 TNS1Q9HBL0 1735 aaKnown RBP20.56■□□□□ 0.88
HPS4-216ENST00000493455 CALD1Q05682 793 aaKnown RBP20.56■□□□□ 0.88
HPS4-216ENST00000493455 TAF7Q15545 349 aaPredicted RBP20.56■□□□□ 0.88
HPS4-216ENST00000493455 NGEFQ8N5V2 710 aa20.56■□□□□ 0.88
HPS4-216ENST00000493455 BCL11BQ9C0K0 894 aaPredicted RBP20.55■□□□□ 0.88
HPS4-216ENST00000493455 TSPYL4Q9UJ04 414 aa20.55■□□□□ 0.88
HPS4-216ENST00000493455 ASAP1Q9ULH1 1129 aa20.54■□□□□ 0.88
HPS4-216ENST00000493455 KDM3BQ7LBC6 1761 aa20.54■□□□□ 0.88
HPS4-216ENST00000493455 PAPPAQ13219 1627 aa20.53■□□□□ 0.88
HPS4-216ENST00000493455 APBA3O96018 575 aa20.53■□□□□ 0.88
HPS4-216ENST00000493455 SF3B2Q13435 895 aaKnown RBP20.53■□□□□ 0.88
HPS4-216ENST00000493455 TTC5Q8N0Z6 440 aa20.53■□□□□ 0.88
HPS4-216ENST00000493455 KCNQ3O43525 872 aa20.52■□□□□ 0.88
HPS4-216ENST00000493455 GNAI1P63096 354 aa20.52■□□□□ 0.88
HPS4-216ENST00000493455 NCBP3Q53F19 620 aaKnown RBP20.52■□□□□ 0.88
HPS4-216ENST00000493455 WDR63Q8IWG1 891 aa20.52■□□□□ 0.88
HPS4-216ENST00000493455 TSR2Q969E8 191 aaKnown RBP20.52■□□□□ 0.88
HPS4-216ENST00000493455 RBM42Q9BTD8 480 aaKnown RBP20.52■□□□□ 0.88
HPS4-216ENST00000493455 GOLGA2Q08379 1002 aa20.51■□□□□ 0.87
HPS4-216ENST00000493455 ATG3Q9NT62 314 aa20.51■□□□□ 0.87
HPS4-216ENST00000493455 ZBED9Q6R2W3 1325 aa20.51■□□□□ 0.87
HPS4-216ENST00000493455 ZNF521Q96K83 1311 aa20.51■□□□□ 0.87
HPS4-216ENST00000493455 PTCD1O75127 700 aaKnown RBP20.5■□□□□ 0.87
HPS4-216ENST00000493455 CDCA7LQ96GN5 454 aa20.5■□□□□ 0.87
HPS4-216ENST00000493455 CFAP44Q96MT7 982 aa20.5■□□□□ 0.87
HPS4-216ENST00000493455 SPINK5Q9NQ38 1064 aaPredicted RBP20.5■□□□□ 0.87
HPS4-216ENST00000493455 MBIPQ9NS73 344 aa20.5■□□□□ 0.87
HPS4-216ENST00000493455 IFT57Q9NWB7 429 aa20.5■□□□□ 0.87
HPS4-216ENST00000493455 PALLDQ8WX93 1383 aa20.49■□□□□ 0.87
HPS4-216ENST00000493455 EP400Q96L91 3159 aa20.49■□□□□ 0.87
HPS4-216ENST00000493455 UBR2Q8IWV8 1755 aa20.49■□□□□ 0.87
HPS4-216ENST00000493455 ZNF790Q6PG37 636 aa20.48■□□□□ 0.87
HPS4-216ENST00000493455 SMARCC1Q92922 1105 aaPredicted RBP20.48■□□□□ 0.87
HPS4-216ENST00000493455 IL16Q14005 1332 aa20.48■□□□□ 0.87
HPS4-216ENST00000493455 CHL1O00533 1208 aa20.47■□□□□ 0.87
HPS4-216ENST00000493455 LY75O60449 1722 aa20.47■□□□□ 0.87
HPS4-216ENST00000493455 ZNF853P0CG23 659 aa20.46■□□□□ 0.87
HPS4-216ENST00000493455 KCNQ4P56696 695 aa20.46■□□□□ 0.87
HPS4-216ENST00000493455 MYH16Q9H6N6 1097 aa20.46■□□□□ 0.87
HPS4-216ENST00000493455 FANCIQ9NVI1 1328 aa20.46■□□□□ 0.87
HPS4-216ENST00000493455 KCPQ6ZWJ8 1503 aa20.45■□□□□ 0.86
HPS4-216ENST00000493455 BAG6P46379 1132 aa20.45■□□□□ 0.86
HPS4-216ENST00000493455 EN1Q05925 392 aaPredicted RBP20.45■□□□□ 0.86
HPS4-216ENST00000493455 ZNF496Q96IT1 587 aaPredicted RBP20.45■□□□□ 0.86
HPS4-216ENST00000493455 C5P01031 1676 aa20.45■□□□□ 0.86
HPS4-216ENST00000493455 E9PSI1 815 aa20.44■□□□□ 0.86
HPS4-216ENST00000493455 KRT24Q2M2I5 525 aa20.44■□□□□ 0.86
HPS4-216ENST00000493455 DEFB132Q7Z7B7 95 aa20.44■□□□□ 0.86
HPS4-216ENST00000493455 UPF1Q92900 1129 aaKnown RBP eCLIP20.44■□□□□ 0.86
HPS4-216ENST00000493455 FMNL2Q96PY5 1086 aa20.44■□□□□ 0.86
HPS4-216ENST00000493455 ELL2O00472 640 aaPredicted RBP20.43■□□□□ 0.86
HPS4-216ENST00000493455 SLFN5Q08AF3 891 aa20.43■□□□□ 0.86
HPS4-216ENST00000493455 BABAM1Q9NWV8 329 aa20.43■□□□□ 0.86
HPS4-216ENST00000493455 CCNL1Q9UK58 526 aaPredicted RBP20.43■□□□□ 0.86
HPS4-216ENST00000493455 LOC102724428A0A0B4J2F2 783 aa20.42■□□□□ 0.86
HPS4-216ENST00000493455 ATP6V1AP38606 617 aa20.42■□□□□ 0.86
HPS4-216ENST00000493455 SIK1P57059 783 aa20.42■□□□□ 0.86
HPS4-216ENST00000493455 EIF4A1P60842 406 aaKnown RBP20.42■□□□□ 0.86
HPS4-216ENST00000493455 TJP1Q07157 1748 aa20.41■□□□□ 0.86
HPS4-216ENST00000493455 EZH2Q15910 746 aaKnown RBP20.41■□□□□ 0.86
HPS4-216ENST00000493455 PRAMEF22A3QJZ6 481 aa20.4■□□□□ 0.86
HPS4-216ENST00000493455 RGPD3A6NKT7 1758 aaPredicted RBP20.4■□□□□ 0.86
HPS4-216ENST00000493455 EXOSC9Q06265 439 aaKnown RBP20.4■□□□□ 0.86
HPS4-216ENST00000493455 RGPD4Q7Z3J3 1758 aa20.4■□□□□ 0.86
HPS4-216ENST00000493455 CCDC125Q86Z20 511 aa20.4■□□□□ 0.86
HPS4-216ENST00000493455 HEG1Q9ULI3 1381 aa20.4■□□□□ 0.86
HPS4-216ENST00000493455 TAF1LQ8IZX4 1826 aa20.39■□□□□ 0.86
HPS4-216ENST00000493455 LAMB4A4D0S4 1761 aa20.39■□□□□ 0.86
HPS4-216ENST00000493455 TXNRD1Q16881 649 aa20.39■□□□□ 0.85
HPS4-216ENST00000493455 DNAJC10Q8IXB1 793 aa20.39■□□□□ 0.85
HPS4-216ENST00000493455 NECTIN2Q92692 538 aa20.39■□□□□ 0.85
HPS4-216ENST00000493455 SLC4A9Q96Q91 983 aa20.39■□□□□ 0.85
HPS4-216ENST00000493455 PLSCR1O15162 318 aa20.38■□□□□ 0.85
HPS4-216ENST00000493455 C8orf58Q8NAV2 365 aa20.38■□□□□ 0.85
HPS4-216ENST00000493455 SNRPA1P09661 255 aaKnown RBP20.37■□□□□ 0.85
HPS4-216ENST00000493455 EIF2S2P20042 333 aaKnown RBP20.37■□□□□ 0.85
HPS4-216ENST00000493455 ITPK1Q13572 414 aa20.37■□□□□ 0.85
HPS4-216ENST00000493455 DUSP27Q5VZP5 1158 aa20.37■□□□□ 0.85
HPS4-216ENST00000493455 TSPYL6Q8N831 410 aa20.37■□□□□ 0.85
HPS4-216ENST00000493455 COL5A3P25940 1745 aaPredicted RBP20.36■□□□□ 0.85
HPS4-216ENST00000493455 RREB1Q92766 1687 aa20.35■□□□□ 0.85
HPS4-216ENST00000493455 GIGYF1O75420 1035 aaPredicted RBP20.35■□□□□ 0.85
HPS4-216ENST00000493455 TWISTNBQ3B726 338 aaPredicted RBP20.35■□□□□ 0.85
HPS4-216ENST00000493455 CAMKK2Q96RR4 588 aa20.35■□□□□ 0.85
HPS4-216ENST00000493455 LRRC4BQ9NT99 713 aa20.35■□□□□ 0.85
HPS4-216ENST00000493455 NUP188Q5SRE5 1749 aa20.34■□□□□ 0.85
HPS4-216ENST00000493455 PROM2Q8N271 834 aa20.34■□□□□ 0.85
HPS4-216ENST00000493455 LINC00116Q8NCU8 138 aa20.34■□□□□ 0.85
HPS4-216ENST00000493455 USP16Q9Y5T5 823 aa20.34■□□□□ 0.85
HPS4-216ENST00000493455 ZNF831Q5JPB2 1677 aa20.34■□□□□ 0.85
HPS4-216ENST00000493455 TCERG1O14776 1098 aaKnown RBP20.33■□□□□ 0.85
HPS4-216ENST00000493455 PIP4K2AP48426 406 aaPredicted RBP20.33■□□□□ 0.85
HPS4-216ENST00000493455 SLC27A3Q5K4L6 730 aa20.33■□□□□ 0.85
HPS4-216ENST00000493455 TRMT2AQ8IZ69 625 aaKnown RBP20.33■□□□□ 0.85
HPS4-216ENST00000493455 VSIG10Q8N0Z9 540 aa20.33■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms