RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 NHSQ6T4R5 1651 aa22.56■■□□□ 1.2
LIME1-208ENST00000493265 DCAF8L1A6NGE4 600 aa22.56■■□□□ 1.2
LIME1-208ENST00000493265 TRIM35Q9UPQ4 493 aa22.56■■□□□ 1.2
LIME1-208ENST00000493265 RNMTO43148 476 aaKnown RBP22.55■■□□□ 1.2
LIME1-208ENST00000493265 LMOD3Q0VAK6 560 aa22.55■■□□□ 1.2
LIME1-208ENST00000493265 TXNRD1Q16881 649 aa22.55■■□□□ 1.2
LIME1-208ENST00000493265 ACSBG1Q96GR2 724 aa22.55■■□□□ 1.2
LIME1-208ENST00000493265 DCAF5Q96JK2 942 aa22.55■■□□□ 1.2
LIME1-208ENST00000493265 IL17REQ8NFR9 667 aa22.54■■□□□ 1.2
LIME1-208ENST00000493265 SYTL4Q96C24 671 aaPredicted RBP22.54■■□□□ 1.2
LIME1-208ENST00000493265 STK32BQ9NY57 414 aa22.54■■□□□ 1.2
LIME1-208ENST00000493265 KDM6AO15550 1401 aaPredicted RBP22.54■■□□□ 1.2
LIME1-208ENST00000493265 NKX1-1Q15270 411 aaPredicted RBP22.53■■□□□ 1.2
LIME1-208ENST00000493265 HTATSF1O43719 755 aaKnown RBP22.52■■□□□ 1.2
LIME1-208ENST00000493265 ATF5Q9Y2D1 282 aaPredicted RBP22.52■■□□□ 1.2
LIME1-208ENST00000493265 DOT1LQ8TEK3 1739 aa22.51■■□□□ 1.19
LIME1-208ENST00000493265 BTAF1O14981 1849 aa22.5■■□□□ 1.19
LIME1-208ENST00000493265 VIRMAQ69YN4 1812 aaKnown RBP22.5■■□□□ 1.19
LIME1-208ENST00000493265 KAT6BQ8WYB5 2073 aa22.5■■□□□ 1.19
LIME1-208ENST00000493265 CABP4P57796 275 aa22.5■■□□□ 1.19
LIME1-208ENST00000493265 TEFQ10587 303 aa22.5■■□□□ 1.19
LIME1-208ENST00000493265 SLC15A2Q16348 729 aa22.5■■□□□ 1.19
LIME1-208ENST00000493265 WWC1Q8IX03 1113 aa22.5■■□□□ 1.19
LIME1-208ENST00000493265 LAS1LQ9Y4W2 734 aaKnown RBP22.5■■□□□ 1.19
LIME1-208ENST00000493265 TOGARAM1Q9Y4F4 1720 aa22.5■■□□□ 1.19
LIME1-208ENST00000493265 SCN11AQ9UI33 1791 aa22.5■■□□□ 1.19
LIME1-208ENST00000493265 PTGER2P43116 358 aa22.49■■□□□ 1.19
LIME1-208ENST00000493265 PRIM1P49642 420 aaKnown RBP22.49■■□□□ 1.19
LIME1-208ENST00000493265 CCDC27Q2M243 656 aa22.48■■□□□ 1.19
LIME1-208ENST00000493265 NGEFQ8N5V2 710 aa22.47■■□□□ 1.19
LIME1-208ENST00000493265 NFATC2IPQ8NCF5 419 aa22.47■■□□□ 1.19
LIME1-208ENST00000493265 TMOD3Q9NYL9 352 aa22.47■■□□□ 1.19
LIME1-208ENST00000493265 PAPPAQ13219 1627 aa22.46■■□□□ 1.19
LIME1-208ENST00000493265 ERVV-2B6SEH9 535 aa22.46■■□□□ 1.19
LIME1-208ENST00000493265 SLC52A2Q9HAB3 445 aa22.46■■□□□ 1.19
LIME1-208ENST00000493265 CEMIPQ8WUJ3 1361 aa22.46■■□□□ 1.19
LIME1-208ENST00000493265 ADAMTS7Q9UKP4 1686 aa22.46■■□□□ 1.19
LIME1-208ENST00000493265 MIS18AQ9NYP9 233 aa22.45■■□□□ 1.18
LIME1-208ENST00000493265 NCBP3Q53F19 620 aaKnown RBP22.44■■□□□ 1.18
LIME1-208ENST00000493265 ITGB4P16144 1822 aa22.43■■□□□ 1.18
LIME1-208ENST00000493265 CALD1Q05682 793 aaKnown RBP22.43■■□□□ 1.18
LIME1-208ENST00000493265 PIGBQ92521 554 aa22.43■■□□□ 1.18
LIME1-208ENST00000493265 FHDC1Q9C0D6 1143 aaPredicted RBP22.43■■□□□ 1.18
LIME1-208ENST00000493265 TAF7Q15545 349 aaPredicted RBP22.42■■□□□ 1.18
LIME1-208ENST00000493265 MTFR1LQ9H019 292 aa22.42■■□□□ 1.18
LIME1-208ENST00000493265 BTBD11A6QL63 1104 aa22.41■■□□□ 1.18
LIME1-208ENST00000493265 WDR63Q8IWG1 891 aa22.41■■□□□ 1.18
LIME1-208ENST00000493265 MRC1P22897 1456 aa22.41■■□□□ 1.18
LIME1-208ENST00000493265 ZBED9Q6R2W3 1325 aa22.4■■□□□ 1.18
LIME1-208ENST00000493265 ZNF521Q96K83 1311 aa22.4■■□□□ 1.18
LIME1-208ENST00000493265 SLC39A6Q13433 755 aa22.4■■□□□ 1.18
LIME1-208ENST00000493265 GOLGA2Q08379 1002 aa22.39■■□□□ 1.17
LIME1-208ENST00000493265 SYT17Q9BSW7 474 aa22.39■■□□□ 1.17
LIME1-208ENST00000493265 TSPYL4Q9UJ04 414 aa22.39■■□□□ 1.17
LIME1-208ENST00000493265 SIPA1L3O60292 1781 aaPredicted RBP22.39■■□□□ 1.17
LIME1-208ENST00000493265 GNAI1P63096 354 aa22.38■■□□□ 1.17
LIME1-208ENST00000493265 ZNF827Q17R98 1081 aa22.38■■□□□ 1.17
LIME1-208ENST00000493265 CDCA7LQ96GN5 454 aa22.38■■□□□ 1.17
LIME1-208ENST00000493265 SGIP1Q9BQI5 828 aa22.38■■□□□ 1.17
LIME1-208ENST00000493265 SPINK5Q9NQ38 1064 aaPredicted RBP22.38■■□□□ 1.17
LIME1-208ENST00000493265 ASAP1Q9ULH1 1129 aa22.38■■□□□ 1.17
LIME1-208ENST00000493265 KCNQ3O43525 872 aa22.37■■□□□ 1.17
LIME1-208ENST00000493265 TSR2Q969E8 191 aaKnown RBP22.37■■□□□ 1.17
LIME1-208ENST00000493265 IFT57Q9NWB7 429 aa22.37■■□□□ 1.17
LIME1-208ENST00000493265 CFAP44Q96MT7 982 aa22.36■■□□□ 1.17
LIME1-208ENST00000493265 CHD4Q14839 1912 aa22.35■■□□□ 1.17
LIME1-208ENST00000493265 IL16Q14005 1332 aa22.35■■□□□ 1.17
LIME1-208ENST00000493265 TTC5Q8N0Z6 440 aa22.35■■□□□ 1.17
LIME1-208ENST00000493265 MBIPQ9NS73 344 aa22.35■■□□□ 1.17
LIME1-208ENST00000493265 LRRC4BQ9NT99 713 aa22.35■■□□□ 1.17
LIME1-208ENST00000493265 UTRNP46939 3433 aa22.34■■□□□ 1.17
LIME1-208ENST00000493265 TUBGCP6Q96RT7 1819 aa22.34■■□□□ 1.17
LIME1-208ENST00000493265 CHL1O00533 1208 aa22.34■■□□□ 1.17
LIME1-208ENST00000493265 PTCD1O75127 700 aaKnown RBP22.34■■□□□ 1.17
LIME1-208ENST00000493265 ARXQ96QS3 562 aa22.34■■□□□ 1.17
LIME1-208ENST00000493265 ATG3Q9NT62 314 aa22.34■■□□□ 1.17
LIME1-208ENST00000493265 ZNF853P0CG23 659 aa22.33■■□□□ 1.17
LIME1-208ENST00000493265 ZNF790Q6PG37 636 aa22.33■■□□□ 1.17
LIME1-208ENST00000493265 RBM42Q9BTD8 480 aaKnown RBP22.33■■□□□ 1.17
LIME1-208ENST00000493265 MYH16Q9H6N6 1097 aa22.33■■□□□ 1.17
LIME1-208ENST00000493265 QSER1Q2KHR3 1735 aa22.33■■□□□ 1.17
LIME1-208ENST00000493265 E9PSI1 815 aa22.32■■□□□ 1.16
LIME1-208ENST00000493265 SLFN5Q08AF3 891 aa22.32■■□□□ 1.16
LIME1-208ENST00000493265 FANCIQ9NVI1 1328 aa22.31■■□□□ 1.16
LIME1-208ENST00000493265 ZNF784Q8NCA9 323 aaPredicted RBP22.31■■□□□ 1.16
LIME1-208ENST00000493265 KDM3BQ7LBC6 1761 aa22.3■■□□□ 1.16
LIME1-208ENST00000493265 PALLDQ8WX93 1383 aa22.3■■□□□ 1.16
LIME1-208ENST00000493265 SMARCC1Q92922 1105 aaPredicted RBP22.3■■□□□ 1.16
LIME1-208ENST00000493265 BABAM1Q9NWV8 329 aa22.3■■□□□ 1.16
LIME1-208ENST00000493265 ZNF496Q96IT1 587 aaPredicted RBP22.29■■□□□ 1.16
LIME1-208ENST00000493265 LY75O60449 1722 aa22.28■■□□□ 1.16
LIME1-208ENST00000493265 KCNQ4P56696 695 aa22.28■■□□□ 1.16
LIME1-208ENST00000493265 KRT24Q2M2I5 525 aa22.28■■□□□ 1.16
LIME1-208ENST00000493265 KLHL34Q8N239 644 aa22.28■■□□□ 1.16
LIME1-208ENST00000493265 AKT1S1Q96B36 256 aa22.28■■□□□ 1.16
LIME1-208ENST00000493265 ELL2O00472 640 aaPredicted RBP22.27■■□□□ 1.16
LIME1-208ENST00000493265 EIF4A1P60842 406 aaKnown RBP22.27■■□□□ 1.16
LIME1-208ENST00000493265 SLC27A3Q5K4L6 730 aa22.27■■□□□ 1.16
LIME1-208ENST00000493265 FMNL2Q96PY5 1086 aa22.27■■□□□ 1.16
LIME1-208ENST00000493265 EXOSC9Q06265 439 aaKnown RBP22.26■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms