RNA–Protein interactions for RNA: ENST00000490663.1

C4A-256, Transcript of complement C4A (Rodgers blood group), human

TSL 2

Gene C4A, Length 524 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
C4A-256	ENST00000490663	CCNL1	Q9UK58	526 aa	Predicted RBP	24.76	■■□□□ 1.55
C4A-256	ENST00000490663	ERVV-2	B6SEH9	535 aa		24.75	■■□□□ 1.55
C4A-256	ENST00000490663	CCDC184	Q52MB2	194 aa		24.75	■■□□□ 1.55
C4A-256	ENST00000490663	LRP5	O75197	1615 aa		24.75	■■□□□ 1.55
C4A-256	ENST00000490663	FCHSD2	O94868	740 aa		24.74	■■□□□ 1.55
C4A-256	ENST00000490663	NFATC2IP	Q8NCF5	419 aa		24.74	■■□□□ 1.55
C4A-256	ENST00000490663	GAS2L2	Q8NHY3	880 aa		24.74	■■□□□ 1.55
C4A-256	ENST00000490663	ATG3	Q9NT62	314 aa		24.74	■■□□□ 1.55
C4A-256	ENST00000490663	PDGFD	Q9GZP0	370 aa	Predicted RBP	24.73	■■□□□ 1.55
C4A-256	ENST00000490663	CIC	Q96RK0	1608 aa	Predicted RBP	24.72	■■□□□ 1.55
C4A-256	ENST00000490663	STK32B	Q9NY57	414 aa		24.72	■■□□□ 1.55
C4A-256	ENST00000490663	KDM3B	Q7LBC6	1761 aa		24.72	■■□□□ 1.55
C4A-256	ENST00000490663	GNAT3	A8MTJ3	354 aa		24.71	■■□□□ 1.55
C4A-256	ENST00000490663	SLC27A3	Q5K4L6	730 aa		24.71	■■□□□ 1.55
C4A-256	ENST00000490663	C4A	P0C0L4	1744 aa		24.7	■■□□□ 1.54
C4A-256	ENST00000490663	SLC15A2	Q16348	729 aa		24.7	■■□□□ 1.54
C4A-256	ENST00000490663	CCDC146	Q8IYE0	955 aa		24.7	■■□□□ 1.54
C4A-256	ENST00000490663	SMARCC1	Q92922	1105 aa	Predicted RBP	24.7	■■□□□ 1.54
C4A-256	ENST00000490663	PLEKHF1	Q96S99	279 aa		24.7	■■□□□ 1.54
C4A-256	ENST00000490663	SLC52A2	Q9HAB3	445 aa		24.7	■■□□□ 1.54
C4A-256	ENST00000490663	KCP	Q6ZWJ8	1503 aa		24.7	■■□□□ 1.54
C4A-256	ENST00000490663	IL17RE	Q8NFR9	667 aa		24.69	■■□□□ 1.54
C4A-256	ENST00000490663	ANP32C	O43423	234 aa		24.68	■■□□□ 1.54
C4A-256	ENST00000490663	SLC39A6	Q13433	755 aa		24.68	■■□□□ 1.54
C4A-256	ENST00000490663	DCTN1	Q14203	1278 aa		24.68	■■□□□ 1.54
C4A-256	ENST00000490663	RBM42	Q9BTD8	480 aa	Known RBP	24.68	■■□□□ 1.54
C4A-256	ENST00000490663	LOC102724428	A0A0B4J2F2	783 aa		24.67	■■□□□ 1.54
C4A-256	ENST00000490663	SIK1	P57059	783 aa		24.67	■■□□□ 1.54
C4A-256	ENST00000490663	WDR43	Q15061	677 aa	Known RBP eCLIP	24.67	■■□□□ 1.54
C4A-256	ENST00000490663	MCM10	Q7L590	875 aa		24.67	■■□□□ 1.54
C4A-256	ENST00000490663	SLC4A9	Q96Q91	983 aa		24.67	■■□□□ 1.54
C4A-256	ENST00000490663	ITPK1	Q13572	414 aa		24.66	■■□□□ 1.54
C4A-256	ENST00000490663	AKT1S1	Q96B36	256 aa		24.66	■■□□□ 1.54
C4A-256	ENST00000490663	COL24A1	Q17RW2	1714 aa		24.66	■■□□□ 1.54
C4A-256	ENST00000490663	MAPK8IP3	Q9UPT6	1336 aa		24.65	■■□□□ 1.54
C4A-256	ENST00000490663	PTCD1	O75127	700 aa	Known RBP	24.65	■■□□□ 1.54
C4A-256	ENST00000490663	ATP6V1A	P38606	617 aa		24.64	■■□□□ 1.54
C4A-256	ENST00000490663	SMIM5	Q71RC9	77 aa		24.64	■■□□□ 1.54
C4A-256	ENST00000490663	LINC00116	Q8NCU8	138 aa		24.64	■■□□□ 1.54
C4A-256	ENST00000490663	LAMB4	A4D0S4	1761 aa		24.63	■■□□□ 1.53
C4A-256	ENST00000490663	NEFM	P07197	916 aa		24.63	■■□□□ 1.53
C4A-256	ENST00000490663	ADAMTS8	Q9UP79	889 aa		24.63	■■□□□ 1.53
C4A-256	ENST00000490663	CEMIP	Q8WUJ3	1361 aa		24.63	■■□□□ 1.53
C4A-256	ENST00000490663	TEF	Q10587	303 aa		24.62	■■□□□ 1.53
C4A-256	ENST00000490663	RRP7A	Q9Y3A4	280 aa	Known RBP	24.62	■■□□□ 1.53
C4A-256	ENST00000490663	NFE2L2	Q16236	605 aa		24.61	■■□□□ 1.53
C4A-256	ENST00000490663	THUMPD2	Q9BTF0	503 aa	Known RBP	24.61	■■□□□ 1.53
C4A-256	ENST00000490663	PNPLA7	Q6ZV29	1317 aa		24.61	■■□□□ 1.53
C4A-256	ENST00000490663	ZBTB7A	O95365	584 aa		24.6	■■□□□ 1.53
C4A-256	ENST00000490663	AMIGO3	Q86WK7	504 aa		24.6	■■□□□ 1.53
C4A-256	ENST00000490663	TFCP2L1	Q9NZI6	479 aa		24.6	■■□□□ 1.53
C4A-256	ENST00000490663	RTF1	Q92541	710 aa	Known RBP	24.59	■■□□□ 1.53
C4A-256	ENST00000490663	SENP3-EIF4A1	A0A087X0R7	540 aa		24.58	■■□□□ 1.53
C4A-256	ENST00000490663	MRS2	Q9HD23	443 aa		24.58	■■□□□ 1.53
C4A-256	ENST00000490663	KCNQ3	O43525	872 aa		24.57	■■□□□ 1.52
C4A-256	ENST00000490663	NEUROD2	Q15784	382 aa		24.57	■■□□□ 1.52
C4A-256	ENST00000490663	PNN	Q9H307	717 aa	Known RBP	24.57	■■□□□ 1.52
C4A-256	ENST00000490663	SRCAP	Q6ZRS2	3230 aa		24.56	■■□□□ 1.52
C4A-256	ENST00000490663	PHF14	O94880	888 aa		24.56	■■□□□ 1.52
C4A-256	ENST00000490663	AK7	Q96M32	723 aa		24.56	■■□□□ 1.52
C4A-256	ENST00000490663	RUNDC1	Q96C34	613 aa		24.55	■■□□□ 1.52
C4A-256	ENST00000490663	ATF5	Q9Y2D1	282 aa	Predicted RBP	24.55	■■□□□ 1.52
C4A-256	ENST00000490663	MSH5	O43196	834 aa		24.54	■■□□□ 1.52
C4A-256	ENST00000490663	TMPO	P42166	694 aa	Known RBP	24.54	■■□□□ 1.52
C4A-256	ENST00000490663	DNAJC10	Q8IXB1	793 aa		24.54	■■□□□ 1.52
C4A-256	ENST00000490663	RIPK4	P57078	832 aa		24.53	■■□□□ 1.52
C4A-256	ENST00000490663	COL23A1	Q86Y22	540 aa	Predicted RBP	24.53	■■□□□ 1.52
C4A-256	ENST00000490663	MIS18A	Q9NYP9	233 aa		24.53	■■□□□ 1.52
C4A-256	ENST00000490663	BTBD11	A6QL63	1104 aa		24.52	■■□□□ 1.52
C4A-256	ENST00000490663	GNPAT	O15228	680 aa		24.52	■■□□□ 1.52
C4A-256	ENST00000490663	TTC5	Q8N0Z6	440 aa		24.52	■■□□□ 1.52
C4A-256	ENST00000490663	HTATSF1	O43719	755 aa	Known RBP	24.51	■■□□□ 1.51
C4A-256	ENST00000490663	ZNF790	Q6PG37	636 aa		24.51	■■□□□ 1.51
C4A-256	ENST00000490663	ZNF496	Q96IT1	587 aa	Predicted RBP	24.51	■■□□□ 1.51
C4A-256	ENST00000490663	MSL1	Q68DK7	614 aa		24.49	■■□□□ 1.51
C4A-256	ENST00000490663	CRKL	P46109	303 aa	Known RBP	24.48	■■□□□ 1.51
C4A-256	ENST00000490663	PNISR	Q8TF01	805 aa	Known RBP	24.48	■■□□□ 1.51
C4A-256	ENST00000490663	SPON1	Q9HCB6	807 aa		24.48	■■□□□ 1.51
C4A-256	ENST00000490663	HEG1	Q9ULI3	1381 aa		24.48	■■□□□ 1.51
C4A-256	ENST00000490663	CNTNAP4	Q9C0A0	1308 aa		24.47	■■□□□ 1.51
C4A-256	ENST00000490663	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	24.47	■■□□□ 1.51
C4A-256	ENST00000490663	BCOR	Q6W2J9	1755 aa		24.47	■■□□□ 1.51
C4A-256	ENST00000490663	APAF1	O14727	1248 aa		24.46	■■□□□ 1.51
C4A-256	ENST00000490663	AFDN	P55196	1824 aa	Known RBP	24.45	■■□□□ 1.5
C4A-256	ENST00000490663	PRAMEF22	A3QJZ6	481 aa		24.45	■■□□□ 1.5
C4A-256	ENST00000490663	TAF7	Q15545	349 aa	Predicted RBP	24.45	■■□□□ 1.5
C4A-256	ENST00000490663	MTFR1L	Q9H019	292 aa		24.45	■■□□□ 1.5
C4A-256	ENST00000490663	TRIM35	Q9UPQ4	493 aa		24.45	■■□□□ 1.5
C4A-256	ENST00000490663	SCN7A	Q01118	1682 aa		24.45	■■□□□ 1.5
C4A-256	ENST00000490663	PTGER2	P43116	358 aa		24.44	■■□□□ 1.5
C4A-256	ENST00000490663	CYP19A1	P11511	503 aa	Predicted RBP	24.43	■■□□□ 1.5
C4A-256	ENST00000490663	FMNL2	Q96PY5	1086 aa		24.43	■■□□□ 1.5
C4A-256	ENST00000490663	SSFA2	P28290	1259 aa		24.42	■■□□□ 1.5
C4A-256	ENST00000490663	INTS5	Q6P9B9	1019 aa	Known RBP	24.42	■■□□□ 1.5
C4A-256	ENST00000490663	CCDC87	Q9NVE4	849 aa		24.42	■■□□□ 1.5
C4A-256	ENST00000490663	RTCB	Q9Y3I0	505 aa	Known RBP	24.42	■■□□□ 1.5
C4A-256	ENST00000490663	RC3H1	Q5TC82	1133 aa	Known RBP	24.41	■■□□□ 1.5
C4A-256	ENST00000490663	FAM9B	Q8IZU0	186 aa		24.41	■■□□□ 1.5
C4A-256	ENST00000490663	ZBTB1	Q9Y2K1	713 aa		24.41	■■□□□ 1.5
C4A-256	ENST00000490663	RPS6KA4	O75676	772 aa		24.4	■■□□□ 1.5

Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms