RNA–Protein interactions for RNA: ENST00000490348.1

SRGAP3-208, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 2

Gene SRGAP3, Length 1,554 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-208ENST00000490348 KCNQ4P56696 695 aa19.06■□□□□ 0.64
SRGAP3-208ENST00000490348 MAPK8IP3Q9UPT6 1336 aa19.06■□□□□ 0.64
SRGAP3-208ENST00000490348 DCTN1Q14203 1278 aa19.06■□□□□ 0.64
SRGAP3-208ENST00000490348 MCM10Q7L590 875 aa19.06■□□□□ 0.64
SRGAP3-208ENST00000490348 DLG5Q8TDM6 1919 aa19.06■□□□□ 0.64
SRGAP3-208ENST00000490348 RUNDC1Q96C34 613 aa19.05■□□□□ 0.64
SRGAP3-208ENST00000490348 NEFMP07197 916 aa19.04■□□□□ 0.64
SRGAP3-208ENST00000490348 PAPPAQ13219 1627 aa19.04■□□□□ 0.64
SRGAP3-208ENST00000490348 TMPOP42166 694 aaKnown RBP19.03■□□□□ 0.64
SRGAP3-208ENST00000490348 ANO8Q9HCE9 1232 aaPredicted RBP19.03■□□□□ 0.64
SRGAP3-208ENST00000490348 RRP7AQ9Y3A4 280 aaKnown RBP19.03■□□□□ 0.64
SRGAP3-208ENST00000490348 SIPA1L3O60292 1781 aaPredicted RBP19.03■□□□□ 0.64
SRGAP3-208ENST00000490348 HTATSF1O43719 755 aaKnown RBP19.02■□□□□ 0.64
SRGAP3-208ENST00000490348 SLC27A3Q5K4L6 730 aa19.02■□□□□ 0.64
SRGAP3-208ENST00000490348 SMARCC1Q92922 1105 aaPredicted RBP19.02■□□□□ 0.64
SRGAP3-208ENST00000490348 SLC4A9Q96Q91 983 aa19.02■□□□□ 0.63
SRGAP3-208ENST00000490348 CCNL1Q9UK58 526 aaPredicted RBP19.02■□□□□ 0.63
SRGAP3-208ENST00000490348 RIPK4P57078 832 aa19.01■□□□□ 0.63
SRGAP3-208ENST00000490348 RTF1Q92541 710 aaKnown RBP19.01■□□□□ 0.63
SRGAP3-208ENST00000490348 THUMPD2Q9BTF0 503 aaKnown RBP19.01■□□□□ 0.63
SRGAP3-208ENST00000490348 LOC102724428A0A0B4J2F2 783 aa19■□□□□ 0.63
SRGAP3-208ENST00000490348 SIK1P57059 783 aa19■□□□□ 0.63
SRGAP3-208ENST00000490348 SLC39A6Q13433 755 aa19■□□□□ 0.63
SRGAP3-208ENST00000490348 TEFQ10587 303 aa18.99■□□□□ 0.63
SRGAP3-208ENST00000490348 MIER1Q8N108 512 aa18.99■□□□□ 0.63
SRGAP3-208ENST00000490348 KCPQ6ZWJ8 1503 aa18.98■□□□□ 0.63
SRGAP3-208ENST00000490348 APAF1O14727 1248 aa18.98■□□□□ 0.63
SRGAP3-208ENST00000490348 NEUROD2Q15784 382 aa18.98■□□□□ 0.63
SRGAP3-208ENST00000490348 TRIM35Q9UPQ4 493 aa18.98■□□□□ 0.63
SRGAP3-208ENST00000490348 ITPK1Q13572 414 aa18.98■□□□□ 0.63
SRGAP3-208ENST00000490348 ZNF827Q17R98 1081 aa18.98■□□□□ 0.63
SRGAP3-208ENST00000490348 PSDA5PKW4 1024 aaPredicted RBP18.97■□□□□ 0.63
SRGAP3-208ENST00000490348 CCER2I3L3R5 266 aa18.97■□□□□ 0.63
SRGAP3-208ENST00000490348 PTCD1O75127 700 aaKnown RBP18.97■□□□□ 0.63
SRGAP3-208ENST00000490348 R3HDM1Q15032 1099 aaKnown RBP18.97■□□□□ 0.63
SRGAP3-208ENST00000490348 C5P01031 1676 aa18.96■□□□□ 0.63
SRGAP3-208ENST00000490348 SENP3-EIF4A1A0A087X0R7 540 aa18.96■□□□□ 0.63
SRGAP3-208ENST00000490348 FAM9BQ8IZU0 186 aa18.96■□□□□ 0.63
SRGAP3-208ENST00000490348 AKT1S1Q96B36 256 aa18.96■□□□□ 0.63
SRGAP3-208ENST00000490348 TAF1LQ8IZX4 1826 aa18.96■□□□□ 0.63
SRGAP3-208ENST00000490348 UBR2Q8IWV8 1755 aa18.96■□□□□ 0.63
SRGAP3-208ENST00000490348 KCNQ3O43525 872 aa18.95■□□□□ 0.62
SRGAP3-208ENST00000490348 LINC00116Q8NCU8 138 aa18.95■□□□□ 0.62
SRGAP3-208ENST00000490348 RBM42Q9BTD8 480 aaKnown RBP18.95■□□□□ 0.62
SRGAP3-208ENST00000490348 BTBD11A6QL63 1104 aa18.94■□□□□ 0.62
SRGAP3-208ENST00000490348 ATP6V1AP38606 617 aa18.94■□□□□ 0.62
SRGAP3-208ENST00000490348 SLC15A2Q16348 729 aa18.94■□□□□ 0.62
SRGAP3-208ENST00000490348 NBPF14Q5TI25 921 aa18.94■□□□□ 0.62
SRGAP3-208ENST00000490348 ZNF790Q6PG37 636 aa18.94■□□□□ 0.62
SRGAP3-208ENST00000490348 ZNF831Q5JPB2 1677 aa18.94■□□□□ 0.62
SRGAP3-208ENST00000490348 MIS18AQ9NYP9 233 aa18.93■□□□□ 0.62
SRGAP3-208ENST00000490348 TAF7Q15545 349 aaPredicted RBP18.93■□□□□ 0.62
SRGAP3-208ENST00000490348 PDGFDQ9GZP0 370 aaPredicted RBP18.93■□□□□ 0.62
SRGAP3-208ENST00000490348 C4BP0C0L5 1744 aa18.92■□□□□ 0.62
SRGAP3-208ENST00000490348 TJP1Q07157 1748 aa18.92■□□□□ 0.62
SRGAP3-208ENST00000490348 LMOD3Q0VAK6 560 aa18.92■□□□□ 0.62
SRGAP3-208ENST00000490348 AMIGO3Q86WK7 504 aa18.92■□□□□ 0.62
SRGAP3-208ENST00000490348 ZNF496Q96IT1 587 aaPredicted RBP18.92■□□□□ 0.62
SRGAP3-208ENST00000490348 STK32BQ9NY57 414 aa18.92■□□□□ 0.62
SRGAP3-208ENST00000490348 CICQ96RK0 1608 aaPredicted RBP18.92■□□□□ 0.62
SRGAP3-208ENST00000490348 COL5A3P25940 1745 aaPredicted RBP18.91■□□□□ 0.62
SRGAP3-208ENST00000490348 TTC5Q8N0Z6 440 aa18.9■□□□□ 0.62
SRGAP3-208ENST00000490348 TUBGCP6Q96RT7 1819 aa18.9■□□□□ 0.62
SRGAP3-208ENST00000490348 KDM3BQ7LBC6 1761 aa18.89■□□□□ 0.61
SRGAP3-208ENST00000490348 DNAJC10Q8IXB1 793 aa18.89■□□□□ 0.61
SRGAP3-208ENST00000490348 HEG1Q9ULI3 1381 aa18.88■□□□□ 0.61
SRGAP3-208ENST00000490348 SMIM5Q71RC9 77 aa18.88■□□□□ 0.61
SRGAP3-208ENST00000490348 VSIG10Q8N0Z9 540 aa18.88■□□□□ 0.61
SRGAP3-208ENST00000490348 PNPLA7Q6ZV29 1317 aa18.87■□□□□ 0.61
SRGAP3-208ENST00000490348 MYH14Q7Z406 1995 aaKnown RBP18.87■□□□□ 0.61
SRGAP3-208ENST00000490348 TFCP2L1Q9NZI6 479 aa18.87■□□□□ 0.61
SRGAP3-208ENST00000490348 CASZ1Q86V15 1759 aa18.87■□□□□ 0.61
SRGAP3-208ENST00000490348 PRAMEF22A3QJZ6 481 aa18.86■□□□□ 0.61
SRGAP3-208ENST00000490348 FMNL2Q96PY5 1086 aa18.86■□□□□ 0.61
SRGAP3-208ENST00000490348 CYP19A1P11511 503 aaPredicted RBP18.85■□□□□ 0.61
SRGAP3-208ENST00000490348 QSER1Q2KHR3 1735 aa18.85■□□□□ 0.61
SRGAP3-208ENST00000490348 CCDC27Q2M243 656 aa18.85■□□□□ 0.61
SRGAP3-208ENST00000490348 UBR3Q6ZT12 1888 aa18.85■□□□□ 0.61
SRGAP3-208ENST00000490348 CNTNAP4Q9C0A0 1308 aa18.85■□□□□ 0.61
SRGAP3-208ENST00000490348 CHL1O00533 1208 aa18.85■□□□□ 0.61
SRGAP3-208ENST00000490348 CRKLP46109 303 aaKnown RBP18.85■□□□□ 0.61
SRGAP3-208ENST00000490348 INTS5Q6P9B9 1019 aaKnown RBP18.85■□□□□ 0.61
SRGAP3-208ENST00000490348 WWC1Q8IX03 1113 aa18.85■□□□□ 0.61
SRGAP3-208ENST00000490348 AK7Q96M32 723 aa18.85■□□□□ 0.61
SRGAP3-208ENST00000490348 EIF4A1P60842 406 aaKnown RBP18.84■□□□□ 0.61
SRGAP3-208ENST00000490348 RC3H1Q5TC82 1133 aaKnown RBP18.84■□□□□ 0.61
SRGAP3-208ENST00000490348 TSPYL4Q9UJ04 414 aa18.84■□□□□ 0.61
SRGAP3-208ENST00000490348 GNPATO15228 680 aa18.83■□□□□ 0.6
SRGAP3-208ENST00000490348 ZNF853P0CG23 659 aa18.83■□□□□ 0.6
SRGAP3-208ENST00000490348 NCBP3Q53F19 620 aaKnown RBP18.83■□□□□ 0.6
SRGAP3-208ENST00000490348 COL23A1Q86Y22 540 aaPredicted RBP18.83■□□□□ 0.6
SRGAP3-208ENST00000490348 BABAM1Q9NWV8 329 aa18.83■□□□□ 0.6
SRGAP3-208ENST00000490348 SALL2Q9Y467 1007 aaPredicted RBP18.83■□□□□ 0.6
SRGAP3-208ENST00000490348 HMGB2P26583 209 aaKnown RBP18.81■□□□□ 0.6
SRGAP3-208ENST00000490348 CFAP44Q96MT7 982 aa18.81■□□□□ 0.6
SRGAP3-208ENST00000490348 LAS1LQ9Y4W2 734 aaKnown RBP18.81■□□□□ 0.6
SRGAP3-208ENST00000490348 USP16Q9Y5T5 823 aa18.81■□□□□ 0.6
SRGAP3-208ENST00000490348 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.81■□□□□ 0.6
SRGAP3-208ENST00000490348 PHF14O94880 888 aa18.81■□□□□ 0.6
SRGAP3-208ENST00000490348 SNRPA1P09661 255 aaKnown RBP18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms