RNA–Protein interactions for RNA: ENST00000490081.5

HDAC1-210, Transcript of histone deacetylase 1, humanhuman

TSL 3

Gene HDAC1, Length 1,047 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-210ENST00000490081 PLSCR1O15162 318 aa16.36■□□□□ 0.21
HDAC1-210ENST00000490081 KCNQ2O43526 872 aa16.36■□□□□ 0.21
HDAC1-210ENST00000490081 TEFQ10587 303 aa16.36■□□□□ 0.21
HDAC1-210ENST00000490081 TAF7Q15545 349 aaPredicted RBP16.36■□□□□ 0.21
HDAC1-210ENST00000490081 MCM10Q7L590 875 aa16.36■□□□□ 0.21
HDAC1-210ENST00000490081 NFATC2IPQ8NCF5 419 aa16.36■□□□□ 0.21
HDAC1-210ENST00000490081 PIGBQ92521 554 aa16.36■□□□□ 0.21
HDAC1-210ENST00000490081 TMOD3Q9NYL9 352 aa16.36■□□□□ 0.21
HDAC1-210ENST00000490081 RRP7AQ9Y3A4 280 aaKnown RBP16.36■□□□□ 0.21
HDAC1-210ENST00000490081 IL16Q14005 1332 aa16.36■□□□□ 0.21
HDAC1-210ENST00000490081 BTAF1O14981 1849 aa16.35■□□□□ 0.21
HDAC1-210ENST00000490081 TRIM37O94972 964 aa16.35■□□□□ 0.21
HDAC1-210ENST00000490081 NEUROD2Q15784 382 aa16.35■□□□□ 0.21
HDAC1-210ENST00000490081 EZH2Q15910 746 aaKnown RBP16.35■□□□□ 0.21
HDAC1-210ENST00000490081 ZNF521Q96K83 1311 aa16.35■□□□□ 0.21
HDAC1-210ENST00000490081 RGPD3A6NKT7 1758 aaPredicted RBP16.34■□□□□ 0.21
HDAC1-210ENST00000490081 RGPD4Q7Z3J3 1758 aa16.34■□□□□ 0.21
HDAC1-210ENST00000490081 PSDA5PKW4 1024 aaPredicted RBP16.34■□□□□ 0.21
HDAC1-210ENST00000490081 HMGB2P26583 209 aaKnown RBP16.34■□□□□ 0.21
HDAC1-210ENST00000490081 DCTN1Q14203 1278 aa16.34■□□□□ 0.21
HDAC1-210ENST00000490081 SMARCC1Q92922 1105 aaPredicted RBP16.34■□□□□ 0.21
HDAC1-210ENST00000490081 ACSBG1Q96GR2 724 aa16.34■□□□□ 0.21
HDAC1-210ENST00000490081 CHL1O00533 1208 aa16.33■□□□□ 0.2
HDAC1-210ENST00000490081 ZNF853P0CG23 659 aa16.33■□□□□ 0.2
HDAC1-210ENST00000490081 CFAP44Q96MT7 982 aa16.33■□□□□ 0.2
HDAC1-210ENST00000490081 ZNF831Q5JPB2 1677 aa16.33■□□□□ 0.2
HDAC1-210ENST00000490081 RREB1Q92766 1687 aa16.33■□□□□ 0.2
HDAC1-210ENST00000490081 PAPPAQ13219 1627 aa16.32■□□□□ 0.2
HDAC1-210ENST00000490081 SYTL4Q96C24 671 aaPredicted RBP16.32■□□□□ 0.2
HDAC1-210ENST00000490081 APBA3O96018 575 aa16.31■□□□□ 0.2
HDAC1-210ENST00000490081 PTF1AQ7RTS3 328 aa16.31■□□□□ 0.2
HDAC1-210ENST00000490081 ATG3Q9NT62 314 aa16.31■□□□□ 0.2
HDAC1-210ENST00000490081 IFT57Q9NWB7 429 aa16.31■□□□□ 0.2
HDAC1-210ENST00000490081 UBR2Q8IWV8 1755 aa16.31■□□□□ 0.2
HDAC1-210ENST00000490081 LY75O60449 1722 aa16.31■□□□□ 0.2
HDAC1-210ENST00000490081 GNAI1P63096 354 aa16.3■□□□□ 0.2
HDAC1-210ENST00000490081 ZNF790Q6PG37 636 aa16.3■□□□□ 0.2
HDAC1-210ENST00000490081 THUMPD2Q9BTF0 503 aaKnown RBP16.3■□□□□ 0.2
HDAC1-210ENST00000490081 KDM3BQ7LBC6 1761 aa16.3■□□□□ 0.2
HDAC1-210ENST00000490081 NUP188Q5SRE5 1749 aa16.29■□□□□ 0.2
HDAC1-210ENST00000490081 BTBD11A6QL63 1104 aa16.29■□□□□ 0.2
HDAC1-210ENST00000490081 VSIG10Q8N0Z9 540 aa16.29■□□□□ 0.2
HDAC1-210ENST00000490081 ASAP1Q9ULH1 1129 aa16.29■□□□□ 0.2
HDAC1-210ENST00000490081 CICQ96RK0 1608 aaPredicted RBP16.28■□□□□ 0.2
HDAC1-210ENST00000490081 R3HDM1Q15032 1099 aaKnown RBP16.28■□□□□ 0.2
HDAC1-210ENST00000490081 HEG1Q9ULI3 1381 aa16.27■□□□□ 0.2
HDAC1-210ENST00000490081 SLC27A3Q5K4L6 730 aa16.27■□□□□ 0.2
HDAC1-210ENST00000490081 PALLDQ8WX93 1383 aa16.26■□□□□ 0.19
HDAC1-210ENST00000490081 ZBED9Q6R2W3 1325 aa16.26■□□□□ 0.19
HDAC1-210ENST00000490081 HNRNPUQ00839 825 aaKnown RBP eCLIP16.26■□□□□ 0.198e-6■□□□□ 9.8
HDAC1-210ENST00000490081 GOLGA2Q08379 1002 aa16.26■□□□□ 0.19
HDAC1-210ENST00000490081 KCPQ6ZWJ8 1503 aa16.25■□□□□ 0.19
HDAC1-210ENST00000490081 TRMT2AQ8IZ69 625 aaKnown RBP16.25■□□□□ 0.19
HDAC1-210ENST00000490081 TTC5Q8N0Z6 440 aa16.25■□□□□ 0.19
HDAC1-210ENST00000490081 TSPYL4Q9UJ04 414 aa16.25■□□□□ 0.19
HDAC1-210ENST00000490081 SOS1Q07889 1333 aaPredicted RBP16.24■□□□□ 0.19
HDAC1-210ENST00000490081 LOC102724428A0A0B4J2F2 783 aa16.24■□□□□ 0.19
HDAC1-210ENST00000490081 SIK1P57059 783 aa16.24■□□□□ 0.19
HDAC1-210ENST00000490081 EIF4A1P60842 406 aaKnown RBP16.24■□□□□ 0.19
HDAC1-210ENST00000490081 PROM2Q8N271 834 aa16.24■□□□□ 0.19
HDAC1-210ENST00000490081 FMNL2Q96PY5 1086 aa16.24■□□□□ 0.19
HDAC1-210ENST00000490081 TEX13AQ9BXU3 409 aaPredicted RBP16.24■□□□□ 0.19
HDAC1-210ENST00000490081 MBIPQ9NS73 344 aa16.24■□□□□ 0.19
HDAC1-210ENST00000490081 SALL2Q9Y467 1007 aaPredicted RBP16.24■□□□□ 0.19
HDAC1-210ENST00000490081 E9PSI1 815 aa16.23■□□□□ 0.19
HDAC1-210ENST00000490081 SLFN5Q08AF3 891 aa16.23■□□□□ 0.19
HDAC1-210ENST00000490081 SLC39A6Q13433 755 aa16.23■□□□□ 0.19
HDAC1-210ENST00000490081 TXNRD1Q16881 649 aa16.23■□□□□ 0.19
HDAC1-210ENST00000490081 ZNF496Q96IT1 587 aaPredicted RBP16.23■□□□□ 0.19
HDAC1-210ENST00000490081 MYH16Q9H6N6 1097 aa16.23■□□□□ 0.19
HDAC1-210ENST00000490081 MIS18AQ9NYP9 233 aa16.23■□□□□ 0.19
HDAC1-210ENST00000490081 TAF1LQ8IZX4 1826 aa16.22■□□□□ 0.19
HDAC1-210ENST00000490081 HOXB7P09629 217 aa16.22■□□□□ 0.19
HDAC1-210ENST00000490081 KCNQ3O43525 872 aa16.21■□□□□ 0.19
HDAC1-210ENST00000490081 GIGYF1O75420 1035 aaPredicted RBP16.21■□□□□ 0.19
HDAC1-210ENST00000490081 SNRPA1P09661 255 aaKnown RBP16.21■□□□□ 0.19
HDAC1-210ENST00000490081 SLC4A9Q96Q91 983 aa16.21■□□□□ 0.19
HDAC1-210ENST00000490081 CHMP4AQ9BY43 222 aa16.21■□□□□ 0.19
HDAC1-210ENST00000490081 PTCD1O75127 700 aaKnown RBP16.2■□□□□ 0.18
HDAC1-210ENST00000490081 RC3H1Q5TC82 1133 aaKnown RBP16.2■□□□□ 0.18
HDAC1-210ENST00000490081 SPINK5Q9NQ38 1064 aaPredicted RBP16.2■□□□□ 0.18
HDAC1-210ENST00000490081 SENP3-EIF4A1A0A087X0R7 540 aa16.19■□□□□ 0.18
HDAC1-210ENST00000490081 ATP6V1AP38606 617 aa16.19■□□□□ 0.18
HDAC1-210ENST00000490081 RBM42Q9BTD8 480 aaKnown RBP16.19■□□□□ 0.18
HDAC1-210ENST00000490081 LRRC4BQ9NT99 713 aa16.19■□□□□ 0.18
HDAC1-210ENST00000490081 CCNL1Q9UK58 526 aaPredicted RBP16.19■□□□□ 0.18
HDAC1-210ENST00000490081 LAS1LQ9Y4W2 734 aaKnown RBP16.19■□□□□ 0.18
HDAC1-210ENST00000490081 COL5A3P25940 1745 aaPredicted RBP16.19■□□□□ 0.18
HDAC1-210ENST00000490081 C5P01031 1676 aa16.18■□□□□ 0.18
HDAC1-210ENST00000490081 TJP1Q07157 1748 aa16.18■□□□□ 0.18
HDAC1-210ENST00000490081 FANCIQ9NVI1 1328 aa16.18■□□□□ 0.18
HDAC1-210ENST00000490081 NBPF14Q5TI25 921 aa16.17■□□□□ 0.18
HDAC1-210ENST00000490081 STARD3NLO95772 234 aa16.16■□□□□ 0.18
HDAC1-210ENST00000490081 CT47B1P0C2W7 299 aaPredicted RBP16.16■□□□□ 0.18
HDAC1-210ENST00000490081 CYP19A1P11511 503 aaPredicted RBP16.16■□□□□ 0.18
HDAC1-210ENST00000490081 ITPK1Q13572 414 aa16.16■□□□□ 0.18
HDAC1-210ENST00000490081 DUSP27Q5VZP5 1158 aa16.16■□□□□ 0.18
HDAC1-210ENST00000490081 CDCA7LQ96GN5 454 aa16.16■□□□□ 0.18
HDAC1-210ENST00000490081 ERBB4Q15303 1308 aa16.16■□□□□ 0.18
HDAC1-210ENST00000490081 CNTNAP4Q9C0A0 1308 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 271 ms