RNA–Protein interactions for RNA: ENST00000489861.2

COL9A1-209, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 3

Gene COL9A1, Length 243 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-209ENST00000489861 ZNF692Q9BU19 519 aaPredicted RBP10.64□□□□□ -0.71
COL9A1-209ENST00000489861 PIM2Q9P1W9 311 aa10.64□□□□□ -0.71
COL9A1-209ENST00000489861 KDM6AO15550 1401 aaPredicted RBP10.64□□□□□ -0.71
COL9A1-209ENST00000489861 RASSF7Q02833 373 aa10.63□□□□□ -0.71
COL9A1-209ENST00000489861 MPRIPQ6WCQ1 1025 aa10.63□□□□□ -0.71
COL9A1-209ENST00000489861 STAC3Q96MF2 364 aa10.63□□□□□ -0.71
COL9A1-209ENST00000489861 ZC3H4Q9UPT8 1303 aaKnown RBP10.62□□□□□ -0.71
COL9A1-209ENST00000489861 POTEIP0CG38 1075 aa10.62□□□□□ -0.71
COL9A1-209ENST00000489861 POTEJP0CG39 1038 aa10.62□□□□□ -0.71
COL9A1-209ENST00000489861 HMGB2P26583 209 aaKnown RBP10.62□□□□□ -0.71
COL9A1-209ENST00000489861 DALRD3Q5D0E6 543 aaKnown RBP10.62□□□□□ -0.71
COL9A1-209ENST00000489861 NME9Q86XW9 330 aa10.62□□□□□ -0.71
COL9A1-209ENST00000489861 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.62□□□□□ -0.71
COL9A1-209ENST00000489861 KTN1Q86UP2 1357 aaKnown RBP10.62□□□□□ -0.71
COL9A1-209ENST00000489861 CASP8AP2Q9UKL3 1982 aa10.61□□□□□ -0.71
COL9A1-209ENST00000489861 GNPATO15228 680 aa10.61□□□□□ -0.71
COL9A1-209ENST00000489861 IP6K1Q92551 441 aa10.61□□□□□ -0.71
COL9A1-209ENST00000489861 CCDC87Q9NVE4 849 aa10.61□□□□□ -0.71
COL9A1-209ENST00000489861 TMF1P82094 1093 aa10.6□□□□□ -0.71
COL9A1-209ENST00000489861 ITPK1Q13572 414 aa10.6□□□□□ -0.71
COL9A1-209ENST00000489861 CHADLQ6NUI6 762 aa10.6□□□□□ -0.71
COL9A1-209ENST00000489861 DICER1Q9UPY3 1922 aaKnown RBP10.6□□□□□ -0.71
COL9A1-209ENST00000489861 CHRNA5P30532 468 aa10.59□□□□□ -0.71
COL9A1-209ENST00000489861 NLGN1Q8N2Q7 840 aa10.59□□□□□ -0.71
COL9A1-209ENST00000489861 SMARCC1Q92922 1105 aaPredicted RBP10.59□□□□□ -0.71
COL9A1-209ENST00000489861 PASKQ96RG2 1323 aa10.58□□□□□ -0.71
COL9A1-209ENST00000489861 MYH14Q7Z406 1995 aaKnown RBP10.58□□□□□ -0.72
COL9A1-209ENST00000489861 LOC102724428A0A0B4J2F2 783 aa10.58□□□□□ -0.72
COL9A1-209ENST00000489861 SIK1P57059 783 aa10.58□□□□□ -0.72
COL9A1-209ENST00000489861 PIGBQ92521 554 aa10.58□□□□□ -0.72
COL9A1-209ENST00000489861 CFAP44Q96MT7 982 aa10.58□□□□□ -0.72
COL9A1-209ENST00000489861 SBNO2Q9Y2G9 1366 aa10.57□□□□□ -0.72
COL9A1-209ENST00000489861 GYS1P13807 737 aa10.57□□□□□ -0.72
COL9A1-209ENST00000489861 LMNB1P20700 586 aa10.57□□□□□ -0.72
COL9A1-209ENST00000489861 PARP3Q9Y6F1 533 aa10.57□□□□□ -0.72
COL9A1-209ENST00000489861 EVC2Q86UK5 1308 aa10.57□□□□□ -0.72
COL9A1-209ENST00000489861 CYP27B1O15528 508 aa10.56□□□□□ -0.72
COL9A1-209ENST00000489861 USHBP1Q8N6Y0 703 aa10.56□□□□□ -0.72
COL9A1-209ENST00000489861 TRAPPC3LQ5T215 181 aa10.55□□□□□ -0.72
COL9A1-209ENST00000489861 NBPF6Q5VWK0 638 aa10.55□□□□□ -0.72
COL9A1-209ENST00000489861 ARHGEF1Q92888 912 aaKnown RBP10.55□□□□□ -0.72
COL9A1-209ENST00000489861 NBPF4Q96M43 638 aa10.55□□□□□ -0.72
COL9A1-209ENST00000489861 CD163L1Q9NR16 1453 aa10.55□□□□□ -0.72
COL9A1-209ENST00000489861 TMEM88BA6NKF7 163 aa10.54□□□□□ -0.72
COL9A1-209ENST00000489861 FBLN1P23142 703 aa10.54□□□□□ -0.72
COL9A1-209ENST00000489861 HOXC9P31274 260 aa10.54□□□□□ -0.72
COL9A1-209ENST00000489861 MCOLN1Q9GZU1 580 aa10.54□□□□□ -0.72
COL9A1-209ENST00000489861 ASAP1Q9ULH1 1129 aa10.54□□□□□ -0.72
COL9A1-209ENST00000489861 DLEC1Q9Y238 1755 aa10.54□□□□□ -0.72
COL9A1-209ENST00000489861 CGNL1Q0VF96 1302 aa10.54□□□□□ -0.72
COL9A1-209ENST00000489861 COL5A3P25940 1745 aaPredicted RBP10.53□□□□□ -0.72
COL9A1-209ENST00000489861 NFKBIEO00221 500 aa10.53□□□□□ -0.72
COL9A1-209ENST00000489861 ITGBL1O95965 494 aaPredicted RBP10.53□□□□□ -0.72
COL9A1-209ENST00000489861 ATP6V1AP38606 617 aa10.53□□□□□ -0.72
COL9A1-209ENST00000489861 MAP2K1Q02750 393 aaPredicted RBP10.53□□□□□ -0.72
COL9A1-209ENST00000489861 DDR1Q08345 913 aa10.53□□□□□ -0.72
COL9A1-209ENST00000489861 RTCBQ9Y3I0 505 aaKnown RBP10.53□□□□□ -0.72
COL9A1-209ENST00000489861 THSD7BQ9C0I4 1608 aa10.53□□□□□ -0.72
COL9A1-209ENST00000489861 AFDNP55196 1824 aaKnown RBP10.53□□□□□ -0.72
COL9A1-209ENST00000489861 MAP3K19Q56UN5 1328 aa10.53□□□□□ -0.72
COL9A1-209ENST00000489861 PCDH11XQ9BZA7 1347 aa10.53□□□□□ -0.72
COL9A1-209ENST00000489861 PCDH11YQ9BZA8 1340 aa10.53□□□□□ -0.72
COL9A1-209ENST00000489861 WDR33Q9C0J8 1336 aaKnown RBP10.53□□□□□ -0.72
COL9A1-209ENST00000489861 RASSF10A6NK89 507 aa10.52□□□□□ -0.73
COL9A1-209ENST00000489861 DEFB115Q30KQ5 88 aa10.52□□□□□ -0.73
COL9A1-209ENST00000489861 PRPF38BQ5VTL8 546 aaKnown RBP10.52□□□□□ -0.73
COL9A1-209ENST00000489861 DPY19L2Q6NUT2 758 aa10.52□□□□□ -0.73
COL9A1-209ENST00000489861 TSKSQ9UJT2 592 aa10.52□□□□□ -0.73
COL9A1-209ENST00000489861 FER1L6Q2WGJ9 1857 aa10.51□□□□□ -0.73
COL9A1-209ENST00000489861 LTBP1Q14766 1721 aa10.51□□□□□ -0.73
COL9A1-209ENST00000489861 RAPGEF4Q8WZA2 1011 aa10.51□□□□□ -0.73
COL9A1-209ENST00000489861 SLC4A9Q96Q91 983 aa10.51□□□□□ -0.73
COL9A1-209ENST00000489861 SCN4AP35499 1836 aa10.51□□□□□ -0.73
COL9A1-209ENST00000489861 DDNO94850 711 aaPredicted RBP10.5□□□□□ -0.73
COL9A1-209ENST00000489861 TATP17735 454 aaPredicted RBP10.5□□□□□ -0.73
COL9A1-209ENST00000489861 RFC4P35249 363 aa10.49□□□□□ -0.73
COL9A1-209ENST00000489861 AMPHP49418 695 aa10.49□□□□□ -0.73
COL9A1-209ENST00000489861 FKBP8Q14318 412 aa10.49□□□□□ -0.73
COL9A1-209ENST00000489861 LDHDQ86WU2 507 aa10.49□□□□□ -0.73
COL9A1-209ENST00000489861 SRP68Q9UHB9 627 aaKnown RBP10.49□□□□□ -0.73
COL9A1-209ENST00000489861 ZNF831Q5JPB2 1677 aa10.49□□□□□ -0.73
COL9A1-209ENST00000489861 KDRP35968 1356 aa10.49□□□□□ -0.73
COL9A1-209ENST00000489861 ADAMTSL1Q8N6G6 1762 aa10.49□□□□□ -0.73
COL9A1-209ENST00000489861 CUL9Q8IWT3 2517 aa10.48□□□□□ -0.73
COL9A1-209ENST00000489861 RPS6KA4O75676 772 aa10.48□□□□□ -0.73
COL9A1-209ENST00000489861 NKX1-1Q15270 411 aaPredicted RBP10.48□□□□□ -0.73
COL9A1-209ENST00000489861 RNF39Q9H2S5 420 aa10.48□□□□□ -0.73
COL9A1-209ENST00000489861 ATG3Q9NT62 314 aa10.48□□□□□ -0.73
COL9A1-209ENST00000489861 POLRMTO00411 1230 aaKnown RBP10.47□□□□□ -0.73
COL9A1-209ENST00000489861 RC3H1Q5TC82 1133 aaKnown RBP10.47□□□□□ -0.73
COL9A1-209ENST00000489861 EDC4Q6P2E9 1401 aaKnown RBP10.47□□□□□ -0.73
COL9A1-209ENST00000489861 ADAMTS7Q9UKP4 1686 aa10.47□□□□□ -0.73
COL9A1-209ENST00000489861 SOX10P56693 466 aa10.46□□□□□ -0.73
COL9A1-209ENST00000489861 DGKZQ13574 1117 aa10.46□□□□□ -0.73
COL9A1-209ENST00000489861 ERFEQ4G0M1 354 aa10.46□□□□□ -0.73
COL9A1-209ENST00000489861 TAF1DQ9H5J8 278 aaPredicted RBP10.46□□□□□ -0.73
COL9A1-209ENST00000489861 TMOD3Q9NYL9 352 aa10.46□□□□□ -0.73
COL9A1-209ENST00000489861 NRXN2Q9P2S2 1712 aa10.46□□□□□ -0.74
COL9A1-209ENST00000489861 CNTNAP4Q9C0A0 1308 aa10.45□□□□□ -0.74
COL9A1-209ENST00000489861 TM4SF1P30408 202 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms