RNA–Protein interactions for RNA: ENST00000489037.1

BRCA1-218, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 4

Gene BRCA1, Length 455 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-218ENST00000489037 ATP6V1AP38606 617 aa19.04■□□□□ 0.64
BRCA1-218ENST00000489037 RBM42Q9BTD8 480 aaKnown RBP19.04■□□□□ 0.64
BRCA1-218ENST00000489037 RNMTO43148 476 aaKnown RBP19.03■□□□□ 0.64
BRCA1-218ENST00000489037 MSH5O43196 834 aa19.03■□□□□ 0.64
BRCA1-218ENST00000489037 SLC16A10Q8TF71 515 aa19.03■□□□□ 0.64
BRCA1-218ENST00000489037 AK7Q96M32 723 aa19.03■□□□□ 0.64
BRCA1-218ENST00000489037 PDGFDQ9GZP0 370 aaPredicted RBP19.03■□□□□ 0.64
BRCA1-218ENST00000489037 MTFR1LQ9H019 292 aa19.03■□□□□ 0.64
BRCA1-218ENST00000489037 RSPH6AQ9H0K4 717 aa19.03■□□□□ 0.64
BRCA1-218ENST00000489037 GNAT3A8MTJ3 354 aa19.02■□□□□ 0.64
BRCA1-218ENST00000489037 FLAD1Q8NFF5 587 aa19.02■□□□□ 0.64
BRCA1-218ENST00000489037 PNNQ9H307 717 aaKnown RBP19.02■□□□□ 0.64
BRCA1-218ENST00000489037 SLC52A2Q9HAB3 445 aa19.02■□□□□ 0.64
BRCA1-218ENST00000489037 LGR6Q9HBX8 967 aa19.02■□□□□ 0.64
BRCA1-218ENST00000489037 ATF5Q9Y2D1 282 aaPredicted RBP19.02■□□□□ 0.64
BRCA1-218ENST00000489037 TUBGCP6Q96RT7 1819 aa19.02■□□□□ 0.63
BRCA1-218ENST00000489037 MAP3K5Q99683 1374 aa19.01■□□□□ 0.63
BRCA1-218ENST00000489037 PNPLA7Q6ZV29 1317 aa19■□□□□ 0.63
BRCA1-218ENST00000489037 MYBBP1AQ9BQG0 1328 aaKnown RBP19■□□□□ 0.63
BRCA1-218ENST00000489037 ZNF316A6NFI3 1004 aaPredicted RBP19■□□□□ 0.63
BRCA1-218ENST00000489037 C4BP0C0L5 1744 aa19■□□□□ 0.63
BRCA1-218ENST00000489037 TEFQ10587 303 aa18.99■□□□□ 0.63
BRCA1-218ENST00000489037 PTCD1O75127 700 aaKnown RBP18.98■□□□□ 0.63
BRCA1-218ENST00000489037 RTF1Q92541 710 aaKnown RBP18.98■□□□□ 0.63
BRCA1-218ENST00000489037 PHACTR3Q96KR7 559 aa18.98■□□□□ 0.63
BRCA1-218ENST00000489037 ZNF831Q5JPB2 1677 aa18.97■□□□□ 0.63
BRCA1-218ENST00000489037 POLD1P28340 1107 aa18.96■□□□□ 0.63
BRCA1-218ENST00000489037 ITPK1Q13572 414 aa18.96■□□□□ 0.63
BRCA1-218ENST00000489037 LINC00116Q8NCU8 138 aa18.96■□□□□ 0.63
BRCA1-218ENST00000489037 SRCAPQ6ZRS2 3230 aa18.96■□□□□ 0.63
BRCA1-218ENST00000489037 ADAMTS7Q9UKP4 1686 aa18.95■□□□□ 0.62
BRCA1-218ENST00000489037 COL23A1Q86Y22 540 aaPredicted RBP18.95■□□□□ 0.62
BRCA1-218ENST00000489037 MRC1P22897 1456 aa18.95■□□□□ 0.62
BRCA1-218ENST00000489037 MAPK8IP3Q9UPT6 1336 aa18.95■□□□□ 0.62
BRCA1-218ENST00000489037 UBR3Q6ZT12 1888 aa18.94■□□□□ 0.62
BRCA1-218ENST00000489037 GNPATO15228 680 aa18.94■□□□□ 0.62
BRCA1-218ENST00000489037 PHF14O94880 888 aa18.94■□□□□ 0.62
BRCA1-218ENST00000489037 TTC5Q8N0Z6 440 aa18.94■□□□□ 0.62
BRCA1-218ENST00000489037 IL17REQ8NFR9 667 aa18.94■□□□□ 0.62
BRCA1-218ENST00000489037 PRKRIP1Q9H875 184 aaPredicted RBP18.94■□□□□ 0.62
BRCA1-218ENST00000489037 SSFA2P28290 1259 aa18.93■□□□□ 0.62
BRCA1-218ENST00000489037 PTGER2P43116 358 aa18.93■□□□□ 0.62
BRCA1-218ENST00000489037 HTATSF1O43719 755 aaKnown RBP18.92■□□□□ 0.62
BRCA1-218ENST00000489037 SLC39A6Q13433 755 aa18.92■□□□□ 0.62
BRCA1-218ENST00000489037 RC3H1Q5TC82 1133 aaKnown RBP18.92■□□□□ 0.62
BRCA1-218ENST00000489037 SLC4A9Q96Q91 983 aa18.92■□□□□ 0.62
BRCA1-218ENST00000489037 ARXQ96QS3 562 aa18.92■□□□□ 0.62
BRCA1-218ENST00000489037 RTCBQ9Y3I0 505 aaKnown RBP18.92■□□□□ 0.62
BRCA1-218ENST00000489037 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.91■□□□□ 0.62
BRCA1-218ENST00000489037 WDR43Q15061 677 aaKnown RBP eCLIP18.91■□□□□ 0.62
BRCA1-218ENST00000489037 CNTNAP4Q9C0A0 1308 aa18.91■□□□□ 0.62
BRCA1-218ENST00000489037 COL5A3P25940 1745 aaPredicted RBP18.91■□□□□ 0.62
BRCA1-218ENST00000489037 DCAF8L1A6NGE4 600 aa18.9■□□□□ 0.62
BRCA1-218ENST00000489037 TRAPPC3LQ5T215 181 aa18.9■□□□□ 0.62
BRCA1-218ENST00000489037 DLG5Q8TDM6 1919 aa18.9■□□□□ 0.62
BRCA1-218ENST00000489037 SGIP1Q9BQI5 828 aa18.89■□□□□ 0.61
BRCA1-218ENST00000489037 SIPA1L3O60292 1781 aaPredicted RBP18.88■□□□□ 0.61
BRCA1-218ENST00000489037 MYH14Q7Z406 1995 aaKnown RBP18.88■□□□□ 0.61
BRCA1-218ENST00000489037 BTBD11A6QL63 1104 aa18.88■□□□□ 0.61
BRCA1-218ENST00000489037 ADRA2BP18089 450 aa18.88■□□□□ 0.61
BRCA1-218ENST00000489037 MCM10Q7L590 875 aa18.88■□□□□ 0.61
BRCA1-218ENST00000489037 VSIG10Q8N0Z9 540 aa18.88■□□□□ 0.61
BRCA1-218ENST00000489037 PLEKHF1Q96S99 279 aa18.88■□□□□ 0.61
BRCA1-218ENST00000489037 CEMIPQ8WUJ3 1361 aa18.88■□□□□ 0.61
BRCA1-218ENST00000489037 COL24A1Q17RW2 1714 aa18.88■□□□□ 0.61
BRCA1-218ENST00000489037 RPS6KA4O75676 772 aa18.87■□□□□ 0.61
BRCA1-218ENST00000489037 CRKLP46109 303 aaKnown RBP18.87■□□□□ 0.61
BRCA1-218ENST00000489037 NFE2L2Q16236 605 aa18.87■□□□□ 0.61
BRCA1-218ENST00000489037 MSL1Q68DK7 614 aa18.87■□□□□ 0.61
BRCA1-218ENST00000489037 ZNF790Q6PG37 636 aa18.87■□□□□ 0.61
BRCA1-218ENST00000489037 TJP1Q07157 1748 aa18.86■□□□□ 0.61
BRCA1-218ENST00000489037 DNAJC10Q8IXB1 793 aa18.86■□□□□ 0.61
BRCA1-218ENST00000489037 TEX13AQ9BXU3 409 aaPredicted RBP18.86■□□□□ 0.61
BRCA1-218ENST00000489037 UBR2Q8IWV8 1755 aa18.86■□□□□ 0.61
BRCA1-218ENST00000489037 CICQ96RK0 1608 aaPredicted RBP18.85■□□□□ 0.61
BRCA1-218ENST00000489037 RFC4P35249 363 aa18.85■□□□□ 0.61
BRCA1-218ENST00000489037 SMIM5Q71RC9 77 aa18.85■□□□□ 0.61
BRCA1-218ENST00000489037 KLHL34Q8N239 644 aa18.85■□□□□ 0.61
BRCA1-218ENST00000489037 FMNL2Q96PY5 1086 aa18.85■□□□□ 0.61
BRCA1-218ENST00000489037 FHDC1Q9C0D6 1143 aaPredicted RBP18.85■□□□□ 0.61
BRCA1-218ENST00000489037 KCPQ6ZWJ8 1503 aa18.84■□□□□ 0.61
BRCA1-218ENST00000489037 ANP32CO43423 234 aa18.84■□□□□ 0.61
BRCA1-218ENST00000489037 STARD3NLO95772 234 aa18.84■□□□□ 0.61
BRCA1-218ENST00000489037 DCTN1Q14203 1278 aa18.84■□□□□ 0.61
BRCA1-218ENST00000489037 AMIGO3Q86WK7 504 aa18.84■□□□□ 0.61
BRCA1-218ENST00000489037 CCDC87Q9NVE4 849 aa18.84■□□□□ 0.61
BRCA1-218ENST00000489037 TAF7Q15545 349 aaPredicted RBP18.83■□□□□ 0.6
BRCA1-218ENST00000489037 ARHGEF1Q92888 912 aaKnown RBP18.83■□□□□ 0.6
BRCA1-218ENST00000489037 SYT17Q9BSW7 474 aa18.83■□□□□ 0.6
BRCA1-218ENST00000489037 CYP19A1P11511 503 aaPredicted RBP18.82■□□□□ 0.6
BRCA1-218ENST00000489037 LMOD3Q0VAK6 560 aa18.82■□□□□ 0.6
BRCA1-218ENST00000489037 PNISRQ8TF01 805 aaKnown RBP18.82■□□□□ 0.6
BRCA1-218ENST00000489037 ZNF496Q96IT1 587 aaPredicted RBP18.82■□□□□ 0.6
BRCA1-218ENST00000489037 HEG1Q9ULI3 1381 aa18.81■□□□□ 0.6
BRCA1-218ENST00000489037 RIPK4P57078 832 aa18.81■□□□□ 0.6
BRCA1-218ENST00000489037 INTS5Q6P9B9 1019 aaKnown RBP18.81■□□□□ 0.6
BRCA1-218ENST00000489037 NLGN1Q8N2Q7 840 aa18.81■□□□□ 0.6
BRCA1-218ENST00000489037 RUNDC1Q96C34 613 aa18.81■□□□□ 0.6
BRCA1-218ENST00000489037 NPM2Q86SE8 214 aaKnown RBP18.8■□□□□ 0.6
BRCA1-218ENST00000489037 CCDC146Q8IYE0 955 aa18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms