RNA–Protein interactions for RNA: ENST00000486665.5

HDAC6-229, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 598 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-229ENST00000486665 YTHDC1Q96MU7 727 aaKnown RBP16.83■□□□□ 0.28
HDAC6-229ENST00000486665 TRIM35Q9UPQ4 493 aa16.83■□□□□ 0.28
HDAC6-229ENST00000486665 PLEKHG2Q9H7P9 1386 aa16.82■□□□□ 0.28
HDAC6-229ENST00000486665 DCAF8L1A6NGE4 600 aa16.82■□□□□ 0.28
HDAC6-229ENST00000486665 PHKG2P15735 406 aa16.82■□□□□ 0.28
HDAC6-229ENST00000486665 QSER1Q2KHR3 1735 aa16.82■□□□□ 0.28
HDAC6-229ENST00000486665 KCNQ4P56696 695 aa16.81■□□□□ 0.28
HDAC6-229ENST00000486665 AKAP4Q5JQC9 854 aa16.81■□□□□ 0.28
HDAC6-229ENST00000486665 IFNL2Q8IZJ0 200 aa16.81■□□□□ 0.28
HDAC6-229ENST00000486665 COL24A1Q17RW2 1714 aa16.81■□□□□ 0.28
HDAC6-229ENST00000486665 LY75O60449 1722 aa16.8■□□□□ 0.28
HDAC6-229ENST00000486665 GNAT3A8MTJ3 354 aa16.8■□□□□ 0.28
HDAC6-229ENST00000486665 DCTN1Q14203 1278 aa16.8■□□□□ 0.28
HDAC6-229ENST00000486665 C1orf141Q5JVX7 400 aa16.8■□□□□ 0.28
HDAC6-229ENST00000486665 AKT1S1Q96B36 256 aa16.8■□□□□ 0.28
HDAC6-229ENST00000486665 LGR6Q9HBX8 967 aa16.8■□□□□ 0.28
HDAC6-229ENST00000486665 PKD1L3Q7Z443 1732 aa16.79■□□□□ 0.28
HDAC6-229ENST00000486665 PCDH11XQ9BZA7 1347 aa16.79■□□□□ 0.28
HDAC6-229ENST00000486665 PCDH11YQ9BZA8 1340 aa16.79■□□□□ 0.28
HDAC6-229ENST00000486665 CHD4Q14839 1912 aa16.79■□□□□ 0.28
HDAC6-229ENST00000486665 NCBP3Q53F19 620 aaKnown RBP16.79■□□□□ 0.28
HDAC6-229ENST00000486665 MPRIPQ6WCQ1 1025 aa16.79■□□□□ 0.28
HDAC6-229ENST00000486665 MCM10Q7L590 875 aa16.79■□□□□ 0.28
HDAC6-229ENST00000486665 IL17REQ8NFR9 667 aa16.79■□□□□ 0.28
HDAC6-229ENST00000486665 ARXQ96QS3 562 aa16.79■□□□□ 0.28
HDAC6-229ENST00000486665 THUMPD2Q9BTF0 503 aaKnown RBP16.79■□□□□ 0.28
HDAC6-229ENST00000486665 MAP3K5Q99683 1374 aa16.78■□□□□ 0.28
HDAC6-229ENST00000486665 NKX1-1Q15270 411 aaPredicted RBP16.78■□□□□ 0.28
HDAC6-229ENST00000486665 CCDC27Q2M243 656 aa16.78■□□□□ 0.28
HDAC6-229ENST00000486665 WWC1Q8IX03 1113 aa16.78■□□□□ 0.28
HDAC6-229ENST00000486665 GOLGB1Q14789 3259 aaKnown RBP16.78■□□□□ 0.28
HDAC6-229ENST00000486665 PNPLA7Q6ZV29 1317 aa16.77■□□□□ 0.28
HDAC6-229ENST00000486665 HTATSF1O43719 755 aaKnown RBP16.77■□□□□ 0.28
HDAC6-229ENST00000486665 ZNF784Q8NCA9 323 aaPredicted RBP16.77■□□□□ 0.28
HDAC6-229ENST00000486665 RNMTO43148 476 aaKnown RBP16.76■□□□□ 0.27
HDAC6-229ENST00000486665 PRIM1P49642 420 aaKnown RBP16.76■□□□□ 0.27
HDAC6-229ENST00000486665 NGEFQ8N5V2 710 aa16.76■□□□□ 0.27
HDAC6-229ENST00000486665 RTF1Q92541 710 aaKnown RBP16.76■□□□□ 0.27
HDAC6-229ENST00000486665 ZNF521Q96K83 1311 aa16.75■□□□□ 0.27
HDAC6-229ENST00000486665 LMOD3Q0VAK6 560 aa16.75■□□□□ 0.27
HDAC6-229ENST00000486665 KDM6AO15550 1401 aaPredicted RBP16.74■□□□□ 0.27
HDAC6-229ENST00000486665 HSP90AB1P08238 724 aaKnown RBP16.74■□□□□ 0.27
HDAC6-229ENST00000486665 SYTL4Q96C24 671 aaPredicted RBP16.74■□□□□ 0.27
HDAC6-229ENST00000486665 DCAF5Q96JK2 942 aa16.74■□□□□ 0.27
HDAC6-229ENST00000486665 DLG5Q8TDM6 1919 aa16.74■□□□□ 0.27
HDAC6-229ENST00000486665 ZBED9Q6R2W3 1325 aa16.72■□□□□ 0.27
HDAC6-229ENST00000486665 SLC27A3Q5K4L6 730 aa16.72■□□□□ 0.27
HDAC6-229ENST00000486665 WDR63Q8IWG1 891 aa16.72■□□□□ 0.27
HDAC6-229ENST00000486665 SPINK5Q9NQ38 1064 aaPredicted RBP16.72■□□□□ 0.27
HDAC6-229ENST00000486665 CEMIPQ8WUJ3 1361 aa16.72■□□□□ 0.27
HDAC6-229ENST00000486665 CDCA7LQ96GN5 454 aa16.71■□□□□ 0.27
HDAC6-229ENST00000486665 KLHL34Q8N239 644 aa16.7■□□□□ 0.26
HDAC6-229ENST00000486665 NLGN2Q8NFZ4 835 aa16.7■□□□□ 0.26
HDAC6-229ENST00000486665 TFCP2L1Q9NZI6 479 aa16.7■□□□□ 0.26
HDAC6-229ENST00000486665 TOGARAM1Q9Y4F4 1720 aa16.7■□□□□ 0.26
HDAC6-229ENST00000486665 ERVV-2B6SEH9 535 aa16.69■□□□□ 0.26
HDAC6-229ENST00000486665 NFATC2IPQ8NCF5 419 aa16.69■□□□□ 0.26
HDAC6-229ENST00000486665 SLC52A2Q9HAB3 445 aa16.69■□□□□ 0.26
HDAC6-229ENST00000486665 MIS18AQ9NYP9 233 aa16.69■□□□□ 0.26
HDAC6-229ENST00000486665 LAS1LQ9Y4W2 734 aaKnown RBP16.69■□□□□ 0.26
HDAC6-229ENST00000486665 C5P01031 1676 aa16.69■□□□□ 0.26
HDAC6-229ENST00000486665 ADAMTS7Q9UKP4 1686 aa16.69■□□□□ 0.26
HDAC6-229ENST00000486665 ZNF853P0CG23 659 aa16.68■□□□□ 0.26
HDAC6-229ENST00000486665 CABP4P57796 275 aa16.68■□□□□ 0.26
HDAC6-229ENST00000486665 GOLGA2Q08379 1002 aa16.68■□□□□ 0.26
HDAC6-229ENST00000486665 TEFQ10587 303 aa16.68■□□□□ 0.26
HDAC6-229ENST00000486665 TAF7Q15545 349 aaPredicted RBP16.68■□□□□ 0.26
HDAC6-229ENST00000486665 SLC16A10Q8TF71 515 aa16.68■□□□□ 0.26
HDAC6-229ENST00000486665 TAF1LQ8IZX4 1826 aa16.68■□□□□ 0.26
HDAC6-229ENST00000486665 SLFN5Q08AF3 891 aa16.67■□□□□ 0.26
HDAC6-229ENST00000486665 CCNL1Q9UK58 526 aaPredicted RBP16.67■□□□□ 0.26
HDAC6-229ENST00000486665 IL16Q14005 1332 aa16.67■□□□□ 0.26
HDAC6-229ENST00000486665 ITGB4P16144 1822 aa16.66■□□□□ 0.26
HDAC6-229ENST00000486665 CHL1O00533 1208 aa16.66■□□□□ 0.26
HDAC6-229ENST00000486665 CALD1Q05682 793 aaKnown RBP16.66■□□□□ 0.26
HDAC6-229ENST00000486665 GPR162Q16538 588 aa16.66■□□□□ 0.26
HDAC6-229ENST00000486665 COL23A1Q86Y22 540 aaPredicted RBP16.66■□□□□ 0.26
HDAC6-229ENST00000486665 PIGBQ92521 554 aa16.66■□□□□ 0.26
HDAC6-229ENST00000486665 IFT57Q9NWB7 429 aa16.66■□□□□ 0.26
HDAC6-229ENST00000486665 SCN11AQ9UI33 1791 aa16.66■□□□□ 0.26
HDAC6-229ENST00000486665 KCNQ3O43525 872 aa16.65■□□□□ 0.26
HDAC6-229ENST00000486665 POLD1P28340 1107 aa16.65■□□□□ 0.26
HDAC6-229ENST00000486665 TRMT2AQ8IZ69 625 aaKnown RBP16.65■□□□□ 0.26
HDAC6-229ENST00000486665 CFAP44Q96MT7 982 aa16.65■□□□□ 0.26
HDAC6-229ENST00000486665 TMOD3Q9NYL9 352 aa16.65■□□□□ 0.26
HDAC6-229ENST00000486665 BTBD11A6QL63 1104 aa16.64■□□□□ 0.25
HDAC6-229ENST00000486665 GNAI1P63096 354 aa16.64■□□□□ 0.25
HDAC6-229ENST00000486665 SLC39A6Q13433 755 aa16.64■□□□□ 0.25
HDAC6-229ENST00000486665 MSL1Q68DK7 614 aa16.64■□□□□ 0.25
HDAC6-229ENST00000486665 PELP1Q8IZL8 1130 aaKnown RBP16.64■□□□□ 0.25
HDAC6-229ENST00000486665 TSR2Q969E8 191 aaKnown RBP16.64■□□□□ 0.25
HDAC6-229ENST00000486665 MBIPQ9NS73 344 aa16.64■□□□□ 0.25
HDAC6-229ENST00000486665 MRC1P22897 1456 aa16.63■□□□□ 0.25
HDAC6-229ENST00000486665 E9PSI1 815 aa16.63■□□□□ 0.25
HDAC6-229ENST00000486665 TSPYL4Q9UJ04 414 aa16.63■□□□□ 0.25
HDAC6-229ENST00000486665 YBX3P16989 372 aaKnown RBP eCLIP16.62■□□□□ 0.25
HDAC6-229ENST00000486665 AMIGO3Q86WK7 504 aa16.62■□□□□ 0.25
HDAC6-229ENST00000486665 BABAM1Q9NWV8 329 aa16.62■□□□□ 0.25
HDAC6-229ENST00000486665 MSH5O43196 834 aa16.61■□□□□ 0.25
HDAC6-229ENST00000486665 DUSP27Q5VZP5 1158 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms