RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 DCAF8L1A6NGE4 600 aa19.62■□□□□ 0.73
USP4-212ENST00000486549 GNAT3A8MTJ3 354 aa19.62■□□□□ 0.73
USP4-212ENST00000486549 NEFMP07197 916 aa19.62■□□□□ 0.73
USP4-212ENST00000486549 ZNF827Q17R98 1081 aa19.62■□□□□ 0.73
USP4-212ENST00000486549 ATG3Q9NT62 314 aa19.62■□□□□ 0.73
USP4-212ENST00000486549 MRC1P22897 1456 aa19.61■□□□□ 0.73
USP4-212ENST00000486549 SLC52A2Q9HAB3 445 aa19.61■□□□□ 0.73
USP4-212ENST00000486549 TUBGCP6Q96RT7 1819 aa19.6■□□□□ 0.73
USP4-212ENST00000486549 ANP32CO43423 234 aa19.6■□□□□ 0.73
USP4-212ENST00000486549 MTFR1LQ9H019 292 aa19.6■□□□□ 0.73
USP4-212ENST00000486549 DLG5Q8TDM6 1919 aa19.6■□□□□ 0.73
USP4-212ENST00000486549 CASZ1Q86V15 1759 aa19.6■□□□□ 0.73
USP4-212ENST00000486549 MAPK8IP3Q9UPT6 1336 aa19.59■□□□□ 0.73
USP4-212ENST00000486549 LOC102724428A0A0B4J2F2 783 aa19.59■□□□□ 0.73
USP4-212ENST00000486549 SIK1P57059 783 aa19.59■□□□□ 0.73
USP4-212ENST00000486549 WDR43Q15061 677 aaKnown RBP eCLIP19.59■□□□□ 0.73
USP4-212ENST00000486549 RBM42Q9BTD8 480 aaKnown RBP19.59■□□□□ 0.73
USP4-212ENST00000486549 ZBTB7AO95365 584 aa19.58■□□□□ 0.72
USP4-212ENST00000486549 PNNQ9H307 717 aaKnown RBP19.58■□□□□ 0.72
USP4-212ENST00000486549 C4BP0C0L5 1744 aa19.58■□□□□ 0.72
USP4-212ENST00000486549 ATP6V1AP38606 617 aa19.57■□□□□ 0.72
USP4-212ENST00000486549 IL17REQ8NFR9 667 aa19.57■□□□□ 0.72
USP4-212ENST00000486549 SLC16A10Q8TF71 515 aa19.57■□□□□ 0.72
USP4-212ENST00000486549 AKT1S1Q96B36 256 aa19.57■□□□□ 0.72
USP4-212ENST00000486549 PLEKHF1Q96S99 279 aa19.57■□□□□ 0.72
USP4-212ENST00000486549 PDGFDQ9GZP0 370 aaPredicted RBP19.57■□□□□ 0.72
USP4-212ENST00000486549 SIPA1L3O60292 1781 aaPredicted RBP19.57■□□□□ 0.72
USP4-212ENST00000486549 QSER1Q2KHR3 1735 aa19.56■□□□□ 0.72
USP4-212ENST00000486549 PTCD1O75127 700 aaKnown RBP19.56■□□□□ 0.72
USP4-212ENST00000486549 TEFQ10587 303 aa19.56■□□□□ 0.72
USP4-212ENST00000486549 RTF1Q92541 710 aaKnown RBP19.56■□□□□ 0.72
USP4-212ENST00000486549 TFCP2L1Q9NZI6 479 aa19.56■□□□□ 0.72
USP4-212ENST00000486549 SLC39A6Q13433 755 aa19.55■□□□□ 0.72
USP4-212ENST00000486549 ITPK1Q13572 414 aa19.55■□□□□ 0.72
USP4-212ENST00000486549 MCM10Q7L590 875 aa19.55■□□□□ 0.72
USP4-212ENST00000486549 CCDC146Q8IYE0 955 aa19.55■□□□□ 0.72
USP4-212ENST00000486549 DCTN1Q14203 1278 aa19.54■□□□□ 0.72
USP4-212ENST00000486549 LINC00116Q8NCU8 138 aa19.54■□□□□ 0.72
USP4-212ENST00000486549 ATF5Q9Y2D1 282 aaPredicted RBP19.54■□□□□ 0.72
USP4-212ENST00000486549 ZNF831Q5JPB2 1677 aa19.53■□□□□ 0.72
USP4-212ENST00000486549 NFE2L2Q16236 605 aa19.53■□□□□ 0.72
USP4-212ENST00000486549 CCDC184Q52MB2 194 aa19.53■□□□□ 0.72
USP4-212ENST00000486549 SLC4A9Q96Q91 983 aa19.53■□□□□ 0.72
USP4-212ENST00000486549 ADAMTS8Q9UP79 889 aa19.53■□□□□ 0.72
USP4-212ENST00000486549 CEMIPQ8WUJ3 1361 aa19.53■□□□□ 0.72
USP4-212ENST00000486549 COL5A3P25940 1745 aaPredicted RBP19.53■□□□□ 0.72
USP4-212ENST00000486549 TJP1Q07157 1748 aa19.53■□□□□ 0.72
USP4-212ENST00000486549 PTGER2P43116 358 aa19.52■□□□□ 0.72
USP4-212ENST00000486549 AK7Q96M32 723 aa19.52■□□□□ 0.72
USP4-212ENST00000486549 UBR2Q8IWV8 1755 aa19.52■□□□□ 0.71
USP4-212ENST00000486549 PNPLA7Q6ZV29 1317 aa19.51■□□□□ 0.71
USP4-212ENST00000486549 UBR3Q6ZT12 1888 aa19.51■□□□□ 0.71
USP4-212ENST00000486549 KCPQ6ZWJ8 1503 aa19.51■□□□□ 0.71
USP4-212ENST00000486549 MSH5O43196 834 aa19.5■□□□□ 0.71
USP4-212ENST00000486549 POLD1P28340 1107 aa19.5■□□□□ 0.71
USP4-212ENST00000486549 TTC5Q8N0Z6 440 aa19.5■□□□□ 0.71
USP4-212ENST00000486549 FLAD1Q8NFF5 587 aa19.5■□□□□ 0.71
USP4-212ENST00000486549 HTATSF1O43719 755 aaKnown RBP19.49■□□□□ 0.71
USP4-212ENST00000486549 MRS2Q9HD23 443 aa19.49■□□□□ 0.71
USP4-212ENST00000486549 CICQ96RK0 1608 aaPredicted RBP19.48■□□□□ 0.71
USP4-212ENST00000486549 PHF14O94880 888 aa19.48■□□□□ 0.71
USP4-212ENST00000486549 RUNDC1Q96C34 613 aa19.48■□□□□ 0.71
USP4-212ENST00000486549 ARXQ96QS3 562 aa19.48■□□□□ 0.71
USP4-212ENST00000486549 RRP7AQ9Y3A4 280 aaKnown RBP19.48■□□□□ 0.71
USP4-212ENST00000486549 BTBD11A6QL63 1104 aa19.47■□□□□ 0.71
USP4-212ENST00000486549 GNPATO15228 680 aa19.47■□□□□ 0.71
USP4-212ENST00000486549 RIPK4P57078 832 aa19.47■□□□□ 0.71
USP4-212ENST00000486549 NEUROD2Q15784 382 aa19.47■□□□□ 0.71
USP4-212ENST00000486549 SMIM5Q71RC9 77 aa19.47■□□□□ 0.71
USP4-212ENST00000486549 THUMPD2Q9BTF0 503 aaKnown RBP19.47■□□□□ 0.71
USP4-212ENST00000486549 TMPOP42166 694 aaKnown RBP19.46■□□□□ 0.71
USP4-212ENST00000486549 ZNF790Q6PG37 636 aa19.46■□□□□ 0.71
USP4-212ENST00000486549 AMIGO3Q86WK7 504 aa19.46■□□□□ 0.71
USP4-212ENST00000486549 COL23A1Q86Y22 540 aaPredicted RBP19.46■□□□□ 0.71
USP4-212ENST00000486549 SGIP1Q9BQI5 828 aa19.46■□□□□ 0.71
USP4-212ENST00000486549 MYH14Q7Z406 1995 aaKnown RBP19.46■□□□□ 0.71
USP4-212ENST00000486549 DNAJC10Q8IXB1 793 aa19.45■□□□□ 0.7
USP4-212ENST00000486549 KCNQ3O43525 872 aa19.44■□□□□ 0.7
USP4-212ENST00000486549 ZNF496Q96IT1 587 aaPredicted RBP19.44■□□□□ 0.7
USP4-212ENST00000486549 CNTNAP4Q9C0A0 1308 aa19.44■□□□□ 0.7
USP4-212ENST00000486549 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.43■□□□□ 0.7
USP4-212ENST00000486549 CRKLP46109 303 aaKnown RBP19.43■□□□□ 0.7
USP4-212ENST00000486549 SYT17Q9BSW7 474 aa19.43■□□□□ 0.7
USP4-212ENST00000486549 FHDC1Q9C0D6 1143 aaPredicted RBP19.43■□□□□ 0.7
USP4-212ENST00000486549 KDM3BQ7LBC6 1761 aa19.42■□□□□ 0.7
USP4-212ENST00000486549 LMOD3Q0VAK6 560 aa19.42■□□□□ 0.7
USP4-212ENST00000486549 TAF7Q15545 349 aaPredicted RBP19.42■□□□□ 0.7
USP4-212ENST00000486549 FMNL2Q96PY5 1086 aa19.42■□□□□ 0.7
USP4-212ENST00000486549 MIS18AQ9NYP9 233 aa19.42■□□□□ 0.7
USP4-212ENST00000486549 RTCBQ9Y3I0 505 aaKnown RBP19.42■□□□□ 0.7
USP4-212ENST00000486549 HEG1Q9ULI3 1381 aa19.42■□□□□ 0.7
USP4-212ENST00000486549 SSFA2P28290 1259 aa19.41■□□□□ 0.7
USP4-212ENST00000486549 RC3H1Q5TC82 1133 aaKnown RBP19.41■□□□□ 0.7
USP4-212ENST00000486549 MSL1Q68DK7 614 aa19.4■□□□□ 0.7
USP4-212ENST00000486549 VSIG10Q8N0Z9 540 aa19.4■□□□□ 0.7
USP4-212ENST00000486549 PNISRQ8TF01 805 aaKnown RBP19.4■□□□□ 0.7
USP4-212ENST00000486549 C4AP0C0L4 1744 aa19.39■□□□□ 0.7
USP4-212ENST00000486549 APAF1O14727 1248 aa19.39■□□□□ 0.69
USP4-212ENST00000486549 CCDC87Q9NVE4 849 aa19.39■□□□□ 0.69
USP4-212ENST00000486549 RPS6KA4O75676 772 aa19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms