RNA–Protein interactions for RNA: ENST00000485983.6

SRGAP3-207, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 1 (best)

Gene SRGAP3, Length 5,677 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-207ENST00000485983 IL1RAPL2Q9NP60 686 aa12.37□□□□□ -0.43
SRGAP3-207ENST00000485983 RPAP2Q8IXW5 612 aaPredicted RBP12.37□□□□□ -0.43
SRGAP3-207ENST00000485983 ZNF397Q8NF99 534 aaPredicted RBP12.37□□□□□ -0.43
SRGAP3-207ENST00000485983 IQCA1Q86XH1 822 aa12.37□□□□□ -0.43
SRGAP3-207ENST00000485983 TRAK2O60296 914 aa12.37□□□□□ -0.43
SRGAP3-207ENST00000485983 NBPF1Q3BBV0 1214 aa12.37□□□□□ -0.43
SRGAP3-207ENST00000485983 CFTRP13569 1480 aa12.37□□□□□ -0.43
SRGAP3-207ENST00000485983 MPHOSPH6Q99547 160 aaKnown RBP12.36□□□□□ -0.43
SRGAP3-207ENST00000485983 ANKRD30BQ9BXX2 1392 aa12.36□□□□□ -0.43
SRGAP3-207ENST00000485983 TSG101Q99816 390 aa12.36□□□□□ -0.43
SRGAP3-207ENST00000485983 LDHCP07864 332 aa12.36□□□□□ -0.43
SRGAP3-207ENST00000485983 EPB41L2O43491 1005 aaKnown RBP12.35□□□□□ -0.43
SRGAP3-207ENST00000485983 ERLIN1O75477 346 aa12.35□□□□□ -0.43
SRGAP3-207ENST00000485983 CABP5Q9NP86 173 aa12.35□□□□□ -0.43
SRGAP3-207ENST00000485983 SMTNL1A8MU46 457 aa12.35□□□□□ -0.43
SRGAP3-207ENST00000485983 TMEM266Q2M3C6 531 aa12.35□□□□□ -0.43
SRGAP3-207ENST00000485983 SPC24Q8NBT2 197 aa12.35□□□□□ -0.43
SRGAP3-207ENST00000485983 CDCA7LQ96GN5 454 aa12.35□□□□□ -0.43
SRGAP3-207ENST00000485983 NFE2L2Q16236 605 aa12.35□□□□□ -0.43
SRGAP3-207ENST00000485983 LEKR1Q6ZMV7 388 aa12.35□□□□□ -0.43
SRGAP3-207ENST00000485983 KIF1BPQ96EK5 621 aa12.35□□□□□ -0.43
SRGAP3-207ENST00000485983 CENPHQ9H3R5 247 aa12.35□□□□□ -0.43
SRGAP3-207ENST00000485983 ANKRD18BA2A2Z9 1011 aa12.35□□□□□ -0.43
SRGAP3-207ENST00000485983 MYO1BO43795 1136 aa12.35□□□□□ -0.43
SRGAP3-207ENST00000485983 MYD88Q99836 296 aa12.35□□□□□ -0.43
SRGAP3-207ENST00000485983 LRPPRCP42704 1394 aaKnown RBP12.35□□□□□ -0.43
SRGAP3-207ENST00000485983 BICRAQ9NZM4 1560 aa12.35□□□□□ -0.43
SRGAP3-207ENST00000485983 NCOA2Q15596 1464 aa12.35□□□□□ -0.43
SRGAP3-207ENST00000485983 KIF20AO95235 890 aa12.35□□□□□ -0.43
SRGAP3-207ENST00000485983 KIAA1328Q86T90 577 aa12.35□□□□□ -0.43
SRGAP3-207ENST00000485983 RNF41Q9H4P4 317 aaPredicted RBP12.35□□□□□ -0.43
SRGAP3-207ENST00000485983 LRRFIP2Q9Y608 721 aaKnown RBP12.35□□□□□ -0.43
SRGAP3-207ENST00000485983 RANBP6O60518 1105 aaKnown RBP12.34□□□□□ -0.43
SRGAP3-207ENST00000485983 KIF21BO75037 1637 aa12.34□□□□□ -0.43
SRGAP3-207ENST00000485983 NFKBIBQ15653 356 aa12.34□□□□□ -0.43
SRGAP3-207ENST00000485983 VPS36Q86VN1 386 aa12.34□□□□□ -0.43
SRGAP3-207ENST00000485983 TEX13AQ9BXU3 409 aaPredicted RBP12.34□□□□□ -0.43
SRGAP3-207ENST00000485983 UBA5Q9GZZ9 404 aa12.34□□□□□ -0.43
SRGAP3-207ENST00000485983 PHAXQ9H814 394 aaKnown RBP12.34□□□□□ -0.43
SRGAP3-207ENST00000485983 PHF8Q9UPP1 1060 aa12.34□□□□□ -0.43
SRGAP3-207ENST00000485983 ERBINQ96RT1 1412 aa12.34□□□□□ -0.43
SRGAP3-207ENST00000485983 UPF3BQ9BZI7 483 aaKnown RBP12.34□□□□□ -0.43
SRGAP3-207ENST00000485983 CHD1LQ86WJ1 897 aa12.33□□□□□ -0.43
SRGAP3-207ENST00000485983 ZNF622Q969S3 477 aaKnown RBP eCLIP12.33□□□□□ -0.43
SRGAP3-207ENST00000485983 WWC3Q9ULE0 1092 aa12.33□□□□□ -0.43
SRGAP3-207ENST00000485983 RAB11FIP3O75154 756 aa12.33□□□□□ -0.44
SRGAP3-207ENST00000485983 GLRX3O76003 335 aaKnown RBP12.33□□□□□ -0.44
SRGAP3-207ENST00000485983 BAG4O95429 457 aaKnown RBP12.33□□□□□ -0.44
SRGAP3-207ENST00000485983 DDX46Q7L014 1031 aaKnown RBP12.33□□□□□ -0.44
SRGAP3-207ENST00000485983 TAF7Q15545 349 aaPredicted RBP12.33□□□□□ -0.44
SRGAP3-207ENST00000485983 DUSP27Q5VZP5 1158 aa12.33□□□□□ -0.44
SRGAP3-207ENST00000485983 CDC5LQ99459 802 aaKnown RBP12.33□□□□□ -0.44
SRGAP3-207ENST00000485983 FGFR1OPO95684 399 aaKnown RBP12.33□□□□□ -0.44
SRGAP3-207ENST00000485983 HMGN5P82970 282 aaKnown RBP12.33□□□□□ -0.44
SRGAP3-207ENST00000485983 MVPQ14764 893 aaKnown RBP12.33□□□□□ -0.44
SRGAP3-207ENST00000485983 MTERF4Q7Z6M4 381 aaKnown RBP12.33□□□□□ -0.44
SRGAP3-207ENST00000485983 C9orf84Q5VXU9 1444 aa12.33□□□□□ -0.44
SRGAP3-207ENST00000485983 FKBP15Q5T1M5 1219 aa12.33□□□□□ -0.44
SRGAP3-207ENST00000485983 FOXO3O43524 673 aa12.32□□□□□ -0.44
SRGAP3-207ENST00000485983 KIAA0754O94854 1291 aa12.32□□□□□ -0.44
SRGAP3-207ENST00000485983 UBAP1LF5GYI3 381 aa12.32□□□□□ -0.44
SRGAP3-207ENST00000485983 K7ELQ4 463 aaPredicted RBP12.32□□□□□ -0.44
SRGAP3-207ENST00000485983 RFC4P35249 363 aa12.32□□□□□ -0.44
SRGAP3-207ENST00000485983 FAM177A1Q8N128 213 aaPredicted RBP12.32□□□□□ -0.44
SRGAP3-207ENST00000485983 HLA-DOAP06340 250 aa12.32□□□□□ -0.44
SRGAP3-207ENST00000485983 CCDC91Q7Z6B0 441 aa12.32□□□□□ -0.44
SRGAP3-207ENST00000485983 CASKIN1Q8WXD9 1431 aa12.32□□□□□ -0.44
SRGAP3-207ENST00000485983 MRC2Q9UBG0 1479 aa12.32□□□□□ -0.44
SRGAP3-207ENST00000485983 BAG3O95817 575 aa12.32□□□□□ -0.44
SRGAP3-207ENST00000485983 A0A087WZG4 1122 aa12.31□□□□□ -0.44
SRGAP3-207ENST00000485983 EIF3JO75822 258 aaKnown RBP12.31□□□□□ -0.44
SRGAP3-207ENST00000485983 NUP62CLQ9H1M0 184 aa12.31□□□□□ -0.44
SRGAP3-207ENST00000485983 LRRC9Q6ZRR7 1453 aa12.31□□□□□ -0.44
SRGAP3-207ENST00000485983 FANCIQ9NVI1 1328 aa12.31□□□□□ -0.44
SRGAP3-207ENST00000485983 CCDC194A0A1B0GVG4 234 aa12.31□□□□□ -0.44
SRGAP3-207ENST00000485983 CETN1Q12798 172 aa12.31□□□□□ -0.44
SRGAP3-207ENST00000485983 NUTM1Q86Y26 1132 aa12.31□□□□□ -0.44
SRGAP3-207ENST00000485983 DDX11Q96FC9 970 aa12.31□□□□□ -0.44
SRGAP3-207ENST00000485983 PLCD4Q9BRC7 762 aa12.31□□□□□ -0.44
SRGAP3-207ENST00000485983 SPA17Q15506 151 aa12.31□□□□□ -0.44
SRGAP3-207ENST00000485983 TOPBP1Q92547 1522 aa12.31□□□□□ -0.44
SRGAP3-207ENST00000485983 ST5P78524 1137 aa12.31□□□□□ -0.44
SRGAP3-207ENST00000485983 ARHGAP29Q52LW3 1261 aa12.31□□□□□ -0.44
SRGAP3-207ENST00000485983 CACNA2D4Q7Z3S7 1137 aa12.31□□□□□ -0.44
SRGAP3-207ENST00000485983 FERMT2Q96AC1 680 aa12.31□□□□□ -0.44
SRGAP3-207ENST00000485983 LIG1P18858 919 aa12.3□□□□□ -0.44
SRGAP3-207ENST00000485983 SPTY2D1Q68D10 685 aaPredicted RBP12.3□□□□□ -0.44
SRGAP3-207ENST00000485983 PPP1R42Q7Z4L9 355 aa12.3□□□□□ -0.44
SRGAP3-207ENST00000485983 CCDC12Q8WUD4 166 aaPredicted RBP12.3□□□□□ -0.44
SRGAP3-207ENST00000485983 SLC12A7Q9Y666 1083 aa12.3□□□□□ -0.44
SRGAP3-207ENST00000485983 ZNF213O14771 459 aa12.3□□□□□ -0.44
SRGAP3-207ENST00000485983 CASTP20810 708 aaKnown RBP12.3□□□□□ -0.44
SRGAP3-207ENST00000485983 CLEC11AQ9Y240 323 aa12.3□□□□□ -0.44
SRGAP3-207ENST00000485983 COMMD10Q9Y6G5 202 aa12.3□□□□□ -0.44
SRGAP3-207ENST00000485983 CATIPQ7Z7H3 387 aa12.29□□□□□ -0.44
SRGAP3-207ENST00000485983 HYPKQ9NX55 129 aa12.29□□□□□ -0.44
SRGAP3-207ENST00000485983 MIS18AQ9NYP9 233 aa12.29□□□□□ -0.44
SRGAP3-207ENST00000485983 POLA1P09884 1462 aaPredicted RBP12.29□□□□□ -0.44
SRGAP3-207ENST00000485983 BOLA2Q9H3K6 86 aa12.29□□□□□ -0.44
SRGAP3-207ENST00000485983 HMGB1P09429 215 aaKnown RBP12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms