RNA–Protein interactions for RNA: ENST00000485055.5

CCDC39-205, Transcript of coiled-coil domain containing 39, humanhuman

TSL 1 (best)

Gene CCDC39, Length 2,874 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-205ENST00000485055 CABP1Q9NZU7 370 aa7.12□□□□□ -1.27
CCDC39-205ENST00000485055 OVOS2A0A0G2JMS6 1433 aa7.11□□□□□ -1.27
CCDC39-205ENST00000485055 FOSBP53539 338 aa7.11□□□□□ -1.27
CCDC39-205ENST00000485055 EXOC8Q8IYI6 725 aa7.11□□□□□ -1.27
CCDC39-205ENST00000485055 TCP11L2Q8N4U5 519 aa7.11□□□□□ -1.27
CCDC39-205ENST00000485055 A0A1W2PP64 1363 aa7.11□□□□□ -1.27
CCDC39-205ENST00000485055 ADAMTS7Q9UKP4 1686 aa7.11□□□□□ -1.27
CCDC39-205ENST00000485055 XPCQ01831 940 aaPredicted RBP7.11□□□□□ -1.27
CCDC39-205ENST00000485055 CDCA8Q53HL2 280 aa7.11□□□□□ -1.27
CCDC39-205ENST00000485055 GIMAP6Q6P9H5 292 aa7.11□□□□□ -1.27
CCDC39-205ENST00000485055 HIRIP3Q9BW71 556 aaPredicted RBP7.11□□□□□ -1.27
CCDC39-205ENST00000485055 PPME1Q9Y570 386 aa7.11□□□□□ -1.27
CCDC39-205ENST00000485055 PLSCR1O15162 318 aa7.1□□□□□ -1.27
CCDC39-205ENST00000485055 BTAF1O14981 1849 aa7.1□□□□□ -1.27
CCDC39-205ENST00000485055 CGNL1Q0VF96 1302 aa7.1□□□□□ -1.27
CCDC39-205ENST00000485055 RGPD2P0DJD1 1756 aa7.1□□□□□ -1.27
CCDC39-205ENST00000485055 E2F4Q16254 413 aa7.1□□□□□ -1.27
CCDC39-205ENST00000485055 ABTB2Q8N961 1025 aa7.1□□□□□ -1.27
CCDC39-205ENST00000485055 CABP2Q9NPB3 220 aa7.1□□□□□ -1.27
CCDC39-205ENST00000485055 TERF2IPQ9NYB0 399 aa7.1□□□□□ -1.27
CCDC39-205ENST00000485055 SRPK2P78362 688 aaKnown RBP7.1□□□□□ -1.27
CCDC39-205ENST00000485055 SKIV2LQ15477 1246 aaKnown RBP7.1□□□□□ -1.27
CCDC39-205ENST00000485055 SND1Q7KZF4 910 aaKnown RBP eCLIP7.1□□□□□ -1.27
CCDC39-205ENST00000485055 CAMKK2Q96RR4 588 aa7.1□□□□□ -1.27
CCDC39-205ENST00000485055 PRDM11Q9NQV5 511 aa7.1□□□□□ -1.27
CCDC39-205ENST00000485055 ZC3H4Q9UPT8 1303 aaKnown RBP7.09□□□□□ -1.27
CCDC39-205ENST00000485055 HMGB2P26583 209 aaKnown RBP7.09□□□□□ -1.27
CCDC39-205ENST00000485055 CABLES1Q8TDN4 633 aa7.09□□□□□ -1.27
CCDC39-205ENST00000485055 MICAL1Q8TDZ2 1067 aa7.09□□□□□ -1.27
CCDC39-205ENST00000485055 CARD11Q9BXL7 1154 aa7.09□□□□□ -1.27
CCDC39-205ENST00000485055 TAF1LQ8IZX4 1826 aa7.09□□□□□ -1.27
CCDC39-205ENST00000485055 SAFB2Q14151 953 aaKnown RBP eCLIP7.09□□□□□ -1.27
CCDC39-205ENST00000485055 FOXD4L6Q3SYB3 417 aaPredicted RBP7.09□□□□□ -1.27
CCDC39-205ENST00000485055 FOXD4L3Q6VB84 417 aaPredicted RBP7.09□□□□□ -1.27
CCDC39-205ENST00000485055 GPIHBP1Q8IV16 184 aa7.09□□□□□ -1.27
CCDC39-205ENST00000485055 DRC1Q96MC2 740 aa7.09□□□□□ -1.27
CCDC39-205ENST00000485055 RBM27Q9P2N5 1060 aaKnown RBP7.09□□□□□ -1.27
CCDC39-205ENST00000485055 MAP2P11137 1827 aaKnown RBP7.09□□□□□ -1.28
CCDC39-205ENST00000485055 USP47Q96K76 1375 aa7.09□□□□□ -1.28
CCDC39-205ENST00000485055 SGSM3Q96HU1 749 aa7.08□□□□□ -1.28
CCDC39-205ENST00000485055 CANXP27824 592 aaKnown RBP7.08□□□□□ -1.28
CCDC39-205ENST00000485055 HDGFL2Q7Z4V5 671 aaPredicted RBP7.08□□□□□ -1.28
CCDC39-205ENST00000485055 DDRGK1Q96HY6 314 aa7.08□□□□□ -1.28
CCDC39-205ENST00000485055 SUGT1Q9Y2Z0 365 aa7.08□□□□□ -1.28
CCDC39-205ENST00000485055 NUTM2FA1L443 756 aa7.07□□□□□ -1.28
CCDC39-205ENST00000485055 KCNA1Q09470 495 aa7.07□□□□□ -1.28
CCDC39-205ENST00000485055 IP6K1Q92551 441 aa7.07□□□□□ -1.28
CCDC39-205ENST00000485055 TUBGCP6Q96RT7 1819 aa7.07□□□□□ -1.28
CCDC39-205ENST00000485055 NPC1L1Q9UHC9 1359 aa7.07□□□□□ -1.28
CCDC39-205ENST00000485055 ITGB4P16144 1822 aa7.07□□□□□ -1.28
CCDC39-205ENST00000485055 FAM43BQ6ZT52 329 aaPredicted RBP7.07□□□□□ -1.28
CCDC39-205ENST00000485055 INSRP06213 1382 aa7.07□□□□□ -1.28
CCDC39-205ENST00000485055 DOT1LQ8TEK3 1739 aa7.07□□□□□ -1.28
CCDC39-205ENST00000485055 ERBB3P21860 1342 aa7.07□□□□□ -1.28
CCDC39-205ENST00000485055 MAP3K5Q99683 1374 aa7.06□□□□□ -1.28
CCDC39-205ENST00000485055 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.06□□□□□ -1.28
CCDC39-205ENST00000485055 TPD52L2O43399 206 aaKnown RBP7.06□□□□□ -1.28
CCDC39-205ENST00000485055 RAB11FIP3O75154 756 aa7.06□□□□□ -1.28
CCDC39-205ENST00000485055 BAG6P46379 1132 aa7.06□□□□□ -1.28
CCDC39-205ENST00000485055 ZRANB1Q9UGI0 708 aa7.06□□□□□ -1.28
CCDC39-205ENST00000485055 C5P01031 1676 aa7.06□□□□□ -1.28
CCDC39-205ENST00000485055 RBM47A0AV96 593 aaKnown RBP7.06□□□□□ -1.28
CCDC39-205ENST00000485055 TMF1P82094 1093 aa7.06□□□□□ -1.28
CCDC39-205ENST00000485055 TOGARAM1Q9Y4F4 1720 aa7.06□□□□□ -1.28
CCDC39-205ENST00000485055 NLRP6P59044 892 aa7.06□□□□□ -1.28
CCDC39-205ENST00000485055 SREK1Q8WXA9 508 aaKnown RBP7.06□□□□□ -1.28
CCDC39-205ENST00000485055 MYH16Q9H6N6 1097 aa7.06□□□□□ -1.28
CCDC39-205ENST00000485055 ANO8Q9HCE9 1232 aaPredicted RBP7.06□□□□□ -1.28
CCDC39-205ENST00000485055 MLLT3P42568 568 aaPredicted RBP7.05□□□□□ -1.28
CCDC39-205ENST00000485055 LARP1Q6PKG0 1096 aaKnown RBP7.05□□□□□ -1.28
CCDC39-205ENST00000485055 FAM9BQ8IZU0 186 aa7.05□□□□□ -1.28
CCDC39-205ENST00000485055 SPINK5Q9NQ38 1064 aaPredicted RBP7.05□□□□□ -1.28
CCDC39-205ENST00000485055 MAFGO15525 162 aa7.05□□□□□ -1.28
CCDC39-205ENST00000485055 PARP9Q8IXQ6 854 aa7.05□□□□□ -1.28
CCDC39-205ENST00000485055 LAS1LQ9Y4W2 734 aaKnown RBP7.05□□□□□ -1.28
CCDC39-205ENST00000485055 U3KPZ7 1027 aaPredicted RBP7.05□□□□□ -1.28
CCDC39-205ENST00000485055 FAM98CQ17RN3 349 aaKnown RBP7.04□□□□□ -1.28
CCDC39-205ENST00000485055 HSP90AB4PQ58FF6 505 aa7.04□□□□□ -1.28
CCDC39-205ENST00000485055 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.04□□□□□ -1.28
CCDC39-205ENST00000485055 AXIN2Q9Y2T1 843 aa7.04□□□□□ -1.28
CCDC39-205ENST00000485055 COL5A3P25940 1745 aaPredicted RBP7.04□□□□□ -1.28
CCDC39-205ENST00000485055 VIRMAQ69YN4 1812 aaKnown RBP7.04□□□□□ -1.28
CCDC39-205ENST00000485055 SETQ01105 290 aaPredicted RBP7.04□□□□□ -1.28
CCDC39-205ENST00000485055 KIF13BQ9NQT8 1826 aa7.04□□□□□ -1.28
CCDC39-205ENST00000485055 ST20-MTHFSA0A0A6YYL1 179 aa7.03□□□□□ -1.28
CCDC39-205ENST00000485055 PEX14O75381 377 aa7.03□□□□□ -1.28
CCDC39-205ENST00000485055 PAK3O75914 559 aaPredicted RBP7.03□□□□□ -1.28
CCDC39-205ENST00000485055 ZNF330Q9Y3S2 320 aaPredicted RBP7.03□□□□□ -1.28
CCDC39-205ENST00000485055 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.02□□□□□ -1.28
CCDC39-205ENST00000485055 TCF3P15923 654 aa7.02□□□□□ -1.28
CCDC39-205ENST00000485055 SF3B2Q13435 895 aaKnown RBP7.02□□□□□ -1.28
CCDC39-205ENST00000485055 TMTC2Q8N394 836 aa7.02□□□□□ -1.28
CCDC39-205ENST00000485055 GPATCH11Q8N954 259 aa7.02□□□□□ -1.28
CCDC39-205ENST00000485055 COG6Q9Y2V7 657 aa7.02□□□□□ -1.28
CCDC39-205ENST00000485055 SCN11AQ9UI33 1791 aa7.02□□□□□ -1.28
CCDC39-205ENST00000485055 FLT4P35916 1363 aa7.02□□□□□ -1.29
CCDC39-205ENST00000485055 FYB1O15117 783 aa7.02□□□□□ -1.29
CCDC39-205ENST00000485055 PTMSP20962 102 aa7.02□□□□□ -1.29
CCDC39-205ENST00000485055 EVA1CP58658 441 aa7.02□□□□□ -1.29
CCDC39-205ENST00000485055 VTI1AQ96AJ9 217 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms