RNA–Protein interactions for RNA: ENST00000483941.1

SMAD9-204, Transcript of SMAD family member 9, humanhuman

TSL 3

Gene SMAD9, Length 545 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-204ENST00000483941 CARD10Q9BWT7 1032 aa18.23■□□□□ 0.51
SMAD9-204ENST00000483941 RRP7AQ9Y3A4 280 aaKnown RBP18.23■□□□□ 0.51
SMAD9-204ENST00000483941 QSER1Q2KHR3 1735 aa18.23■□□□□ 0.51
SMAD9-204ENST00000483941 IL16Q14005 1332 aa18.23■□□□□ 0.51
SMAD9-204ENST00000483941 TATP17735 454 aaPredicted RBP18.22■□□□□ 0.51
SMAD9-204ENST00000483941 RTF1Q92541 710 aaKnown RBP18.22■□□□□ 0.51
SMAD9-204ENST00000483941 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.22■□□□□ 0.51
SMAD9-204ENST00000483941 ARXQ96QS3 562 aa18.21■□□□□ 0.51
SMAD9-204ENST00000483941 MYH16Q9H6N6 1097 aa18.21■□□□□ 0.51
SMAD9-204ENST00000483941 EXOC5O00471 708 aa18.19■□□□□ 0.5
SMAD9-204ENST00000483941 COL24A1Q17RW2 1714 aa18.19■□□□□ 0.5
SMAD9-204ENST00000483941 USHBP1Q8N6Y0 703 aa18.19■□□□□ 0.5
SMAD9-204ENST00000483941 SPG7Q9UQ90 795 aa18.19■□□□□ 0.5
SMAD9-204ENST00000483941 SLFN5Q08AF3 891 aa18.18■□□□□ 0.5
SMAD9-204ENST00000483941 MTHFSDQ2M296 383 aaKnown RBP18.18■□□□□ 0.5
SMAD9-204ENST00000483941 TRIM35Q9UPQ4 493 aa18.18■□□□□ 0.5
SMAD9-204ENST00000483941 TUBGCP6Q96RT7 1819 aa18.18■□□□□ 0.5
SMAD9-204ENST00000483941 SHANK3Q9BYB0 1731 aa18.18■□□□□ 0.5
SMAD9-204ENST00000483941 GNAT3A8MTJ3 354 aa18.17■□□□□ 0.5
SMAD9-204ENST00000483941 C1orf141Q5JVX7 400 aa18.17■□□□□ 0.5
SMAD9-204ENST00000483941 KAT6BQ8WYB5 2073 aa18.17■□□□□ 0.5
SMAD9-204ENST00000483941 GIGYF1O75420 1035 aaPredicted RBP18.16■□□□□ 0.5
SMAD9-204ENST00000483941 GNAI1P63096 354 aa18.15■□□□□ 0.5
SMAD9-204ENST00000483941 GPR162Q16538 588 aa18.15■□□□□ 0.5
SMAD9-204ENST00000483941 AKAP4Q5JQC9 854 aa18.15■□□□□ 0.5
SMAD9-204ENST00000483941 IFFO2Q5TF58 517 aa18.15■□□□□ 0.5
SMAD9-204ENST00000483941 ACSBG1Q96GR2 724 aa18.15■□□□□ 0.5
SMAD9-204ENST00000483941 HSP90AB1P08238 724 aaKnown RBP18.14■□□□□ 0.49
SMAD9-204ENST00000483941 IL2RBP14784 551 aa18.14■□□□□ 0.49
SMAD9-204ENST00000483941 ZNF827Q17R98 1081 aa18.14■□□□□ 0.49
SMAD9-204ENST00000483941 TRMT2AQ8IZ69 625 aaKnown RBP18.14■□□□□ 0.49
SMAD9-204ENST00000483941 ZNF530Q6P9A1 599 aaPredicted RBP18.13■□□□□ 0.49
SMAD9-204ENST00000483941 CDCA7LQ96GN5 454 aa18.13■□□□□ 0.49
SMAD9-204ENST00000483941 IFT57Q9NWB7 429 aa18.13■□□□□ 0.49
SMAD9-204ENST00000483941 DUSP27Q5VZP5 1158 aa18.12■□□□□ 0.49
SMAD9-204ENST00000483941 BABAM1Q9NWV8 329 aa18.12■□□□□ 0.49
SMAD9-204ENST00000483941 CT47B1P0C2W7 299 aaPredicted RBP18.11■□□□□ 0.49
SMAD9-204ENST00000483941 IFNL2Q8IZJ0 200 aa18.11■□□□□ 0.49
SMAD9-204ENST00000483941 KLHL34Q8N239 644 aa18.11■□□□□ 0.49
SMAD9-204ENST00000483941 CFAP44Q96MT7 982 aa18.11■□□□□ 0.49
SMAD9-204ENST00000483941 PELP1Q8IZL8 1130 aaKnown RBP18.1■□□□□ 0.49
SMAD9-204ENST00000483941 ZCRB1Q8TBF4 217 aaKnown RBP18.1■□□□□ 0.49
SMAD9-204ENST00000483941 POLD1P28340 1107 aa18.09■□□□□ 0.49
SMAD9-204ENST00000483941 PCDH11XQ9BZA7 1347 aa18.08■□□□□ 0.49
SMAD9-204ENST00000483941 PCDH11YQ9BZA8 1340 aa18.08■□□□□ 0.49
SMAD9-204ENST00000483941 LRRC4BQ9NT99 713 aa18.08■□□□□ 0.48
SMAD9-204ENST00000483941 LY75O60449 1722 aa18.07■□□□□ 0.48
SMAD9-204ENST00000483941 DOT1LQ8TEK3 1739 aa18.07■□□□□ 0.48
SMAD9-204ENST00000483941 SLC16A10Q8TF71 515 aa18.07■□□□□ 0.48
SMAD9-204ENST00000483941 RGPD2P0DJD1 1756 aa18.07■□□□□ 0.48
SMAD9-204ENST00000483941 ZNF853P0CG23 659 aa18.06■□□□□ 0.48
SMAD9-204ENST00000483941 MCM10Q7L590 875 aa18.06■□□□□ 0.48
SMAD9-204ENST00000483941 AKT1S1Q96B36 256 aa18.06■□□□□ 0.48
SMAD9-204ENST00000483941 ZNF428Q96B54 188 aa18.06■□□□□ 0.48
SMAD9-204ENST00000483941 DCAF5Q96JK2 942 aa18.06■□□□□ 0.48
SMAD9-204ENST00000483941 RCAN3Q9UKA8 241 aa18.06■□□□□ 0.48
SMAD9-204ENST00000483941 LAS1LQ9Y4W2 734 aaKnown RBP18.06■□□□□ 0.48
SMAD9-204ENST00000483941 MEGF6O75095 1541 aa18.06■□□□□ 0.48
SMAD9-204ENST00000483941 PNPLA7Q6ZV29 1317 aa18.05■□□□□ 0.48
SMAD9-204ENST00000483941 PHKG2P15735 406 aa18.05■□□□□ 0.48
SMAD9-204ENST00000483941 TEFQ10587 303 aa18.05■□□□□ 0.48
SMAD9-204ENST00000483941 TAF7Q15545 349 aaPredicted RBP18.05■□□□□ 0.48
SMAD9-204ENST00000483941 CHMP4AQ9BY43 222 aa18.05■□□□□ 0.48
SMAD9-204ENST00000483941 SPINK5Q9NQ38 1064 aaPredicted RBP18.05■□□□□ 0.48
SMAD9-204ENST00000483941 FANCIQ9NVI1 1328 aa18.04■□□□□ 0.48
SMAD9-204ENST00000483941 CHL1O00533 1208 aa18.04■□□□□ 0.48
SMAD9-204ENST00000483941 DCTN1Q14203 1278 aa18.04■□□□□ 0.48
SMAD9-204ENST00000483941 SLC27A3Q5K4L6 730 aa18.04■□□□□ 0.48
SMAD9-204ENST00000483941 NLGN2Q8NFZ4 835 aa18.04■□□□□ 0.48
SMAD9-204ENST00000483941 CEMIPQ8WUJ3 1361 aa18.04■□□□□ 0.48
SMAD9-204ENST00000483941 RNMTO43148 476 aaKnown RBP18.03■□□□□ 0.48
SMAD9-204ENST00000483941 NEFLP07196 543 aa18.03■□□□□ 0.48
SMAD9-204ENST00000483941 IL17REQ8NFR9 667 aa18.03■□□□□ 0.48
SMAD9-204ENST00000483941 THUMPD2Q9BTF0 503 aaKnown RBP18.03■□□□□ 0.48
SMAD9-204ENST00000483941 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.02■□□□□ 0.48
SMAD9-204ENST00000483941 TSPYL4Q9UJ04 414 aa18.02■□□□□ 0.48
SMAD9-204ENST00000483941 SOS1Q07889 1333 aaPredicted RBP18.01■□□□□ 0.47
SMAD9-204ENST00000483941 NKX1-1Q15270 411 aaPredicted RBP18.01■□□□□ 0.47
SMAD9-204ENST00000483941 MPRIPQ6WCQ1 1025 aa18.01■□□□□ 0.47
SMAD9-204ENST00000483941 TFCP2L1Q9NZI6 479 aa18.01■□□□□ 0.47
SMAD9-204ENST00000483941 DLG5Q8TDM6 1919 aa18.01■□□□□ 0.47
SMAD9-204ENST00000483941 MBIPQ9NS73 344 aa18■□□□□ 0.47
SMAD9-204ENST00000483941 ERVV-2B6SEH9 535 aa17.99■□□□□ 0.47
SMAD9-204ENST00000483941 CYP27B1O15528 508 aa17.99■□□□□ 0.47
SMAD9-204ENST00000483941 GRIN3BO60391 1043 aa17.99■□□□□ 0.47
SMAD9-204ENST00000483941 TSR2Q969E8 191 aaKnown RBP17.99■□□□□ 0.47
SMAD9-204ENST00000483941 SUPT16HQ9Y5B9 1047 aaKnown RBP17.99■□□□□ 0.47
SMAD9-204ENST00000483941 ATP10DQ9P241 1426 aa17.98■□□□□ 0.47
SMAD9-204ENST00000483941 PKD1L3Q7Z443 1732 aa17.98■□□□□ 0.47
SMAD9-204ENST00000483941 YBX3P16989 372 aaKnown RBP eCLIP17.98■□□□□ 0.47
SMAD9-204ENST00000483941 EXOSC9Q06265 439 aaKnown RBP17.98■□□□□ 0.47
SMAD9-204ENST00000483941 DDX54Q8TDD1 881 aaKnown RBP17.98■□□□□ 0.47
SMAD9-204ENST00000483941 LGR6Q9HBX8 967 aa17.98■□□□□ 0.47
SMAD9-204ENST00000483941 BTBD11A6QL63 1104 aa17.97■□□□□ 0.47
SMAD9-204ENST00000483941 SLC52A2Q9HAB3 445 aa17.97■□□□□ 0.47
SMAD9-204ENST00000483941 C5P01031 1676 aa17.96■□□□□ 0.47
SMAD9-204ENST00000483941 KCNQ4P56696 695 aa17.96■□□□□ 0.47
SMAD9-204ENST00000483941 CABP4P57796 275 aa17.96■□□□□ 0.47
SMAD9-204ENST00000483941 ALDH1L2Q3SY69 923 aa17.95■□□□□ 0.46
SMAD9-204ENST00000483941 SYTL4Q96C24 671 aaPredicted RBP17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms