RNA–Protein interactions for RNA: ENST00000480210.1

USP54-212, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 640 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-212ENST00000480210 SIPA1L3O60292 1781 aaPredicted RBP10.82□□□□□ -0.68
USP54-212ENST00000480210 KDM6AO15550 1401 aaPredicted RBP10.82□□□□□ -0.68
USP54-212ENST00000480210 MRC1P22897 1456 aa10.81□□□□□ -0.68
USP54-212ENST00000480210 SOCS7O14512 581 aa10.81□□□□□ -0.68
USP54-212ENST00000480210 APBA3O96018 575 aa10.81□□□□□ -0.68
USP54-212ENST00000480210 TAF7Q15545 349 aaPredicted RBP10.81□□□□□ -0.68
USP54-212ENST00000480210 NFATC2IPQ8NCF5 419 aa10.81□□□□□ -0.68
USP54-212ENST00000480210 PIGBQ92521 554 aa10.81□□□□□ -0.68
USP54-212ENST00000480210 KCNQ2O43526 872 aa10.8□□□□□ -0.68
USP54-212ENST00000480210 SLC27A3Q5K4L6 730 aa10.8□□□□□ -0.68
USP54-212ENST00000480210 LY75O60449 1722 aa10.8□□□□□ -0.68
USP54-212ENST00000480210 ZNF831Q5JPB2 1677 aa10.79□□□□□ -0.68
USP54-212ENST00000480210 NEUROD2Q15784 382 aa10.79□□□□□ -0.68
USP54-212ENST00000480210 WDR63Q8IWG1 891 aa10.79□□□□□ -0.68
USP54-212ENST00000480210 TRIM35Q9UPQ4 493 aa10.79□□□□□ -0.68
USP54-212ENST00000480210 BTBD11A6QL63 1104 aa10.78□□□□□ -0.68
USP54-212ENST00000480210 MCM10Q7L590 875 aa10.78□□□□□ -0.68
USP54-212ENST00000480210 TTC5Q8N0Z6 440 aa10.78□□□□□ -0.68
USP54-212ENST00000480210 VSIG10Q8N0Z9 540 aa10.78□□□□□ -0.68
USP54-212ENST00000480210 CHMP4AQ9BY43 222 aa10.78□□□□□ -0.68
USP54-212ENST00000480210 IL16Q14005 1332 aa10.78□□□□□ -0.68
USP54-212ENST00000480210 GNAI1P63096 354 aa10.77□□□□□ -0.69
USP54-212ENST00000480210 WWC1Q8IX03 1113 aa10.77□□□□□ -0.69
USP54-212ENST00000480210 CFAP44Q96MT7 982 aa10.77□□□□□ -0.69
USP54-212ENST00000480210 CAMKK2Q96RR4 588 aa10.77□□□□□ -0.69
USP54-212ENST00000480210 TEX13AQ9BXU3 409 aaPredicted RBP10.77□□□□□ -0.69
USP54-212ENST00000480210 ATG3Q9NT62 314 aa10.77□□□□□ -0.69
USP54-212ENST00000480210 RRP7AQ9Y3A4 280 aaKnown RBP10.77□□□□□ -0.69
USP54-212ENST00000480210 UBR2Q8IWV8 1755 aa10.76□□□□□ -0.69
USP54-212ENST00000480210 DCTN1Q14203 1278 aa10.76□□□□□ -0.69
USP54-212ENST00000480210 ZNF790Q6PG37 636 aa10.76□□□□□ -0.69
USP54-212ENST00000480210 IFT57Q9NWB7 429 aa10.76□□□□□ -0.69
USP54-212ENST00000480210 TAF1LQ8IZX4 1826 aa10.76□□□□□ -0.69
USP54-212ENST00000480210 PAPPAQ13219 1627 aa10.76□□□□□ -0.69
USP54-212ENST00000480210 PALLDQ8WX93 1383 aa10.76□□□□□ -0.69
USP54-212ENST00000480210 CACNA1FO60840 1977 aa10.76□□□□□ -0.69
USP54-212ENST00000480210 KDM3BQ7LBC6 1761 aa10.75□□□□□ -0.69
USP54-212ENST00000480210 CHL1O00533 1208 aa10.75□□□□□ -0.69
USP54-212ENST00000480210 EN1Q05925 392 aaPredicted RBP10.75□□□□□ -0.69
USP54-212ENST00000480210 TXNRD1Q16881 649 aa10.75□□□□□ -0.69
USP54-212ENST00000480210 NBPF14Q5TI25 921 aa10.75□□□□□ -0.69
USP54-212ENST00000480210 FMNL2Q96PY5 1086 aa10.75□□□□□ -0.69
USP54-212ENST00000480210 ASAP1Q9ULH1 1129 aa10.75□□□□□ -0.69
USP54-212ENST00000480210 CICQ96RK0 1608 aaPredicted RBP10.74□□□□□ -0.69
USP54-212ENST00000480210 RREB1Q92766 1687 aa10.74□□□□□ -0.69
USP54-212ENST00000480210 LOC102724428A0A0B4J2F2 783 aa10.74□□□□□ -0.69
USP54-212ENST00000480210 ZNF853P0CG23 659 aa10.74□□□□□ -0.69
USP54-212ENST00000480210 SIK1P57059 783 aa10.74□□□□□ -0.69
USP54-212ENST00000480210 TSPYL4Q9UJ04 414 aa10.74□□□□□ -0.69
USP54-212ENST00000480210 CCNL1Q9UK58 526 aaPredicted RBP10.74□□□□□ -0.69
USP54-212ENST00000480210 SOS1Q07889 1333 aaPredicted RBP10.74□□□□□ -0.69
USP54-212ENST00000480210 EP400Q96L91 3159 aa10.73□□□□□ -0.69
USP54-212ENST00000480210 ATP6V1AP38606 617 aa10.73□□□□□ -0.69
USP54-212ENST00000480210 EZH2Q15910 746 aaKnown RBP10.73□□□□□ -0.69
USP54-212ENST00000480210 PTF1AQ7RTS3 328 aa10.73□□□□□ -0.69
USP54-212ENST00000480210 DEFB132Q7Z7B7 95 aa10.73□□□□□ -0.69
USP54-212ENST00000480210 RBM42Q9BTD8 480 aaKnown RBP10.73□□□□□ -0.69
USP54-212ENST00000480210 HOXB7P09629 217 aa10.72□□□□□ -0.69
USP54-212ENST00000480210 SNRPA1P09661 255 aaKnown RBP10.72□□□□□ -0.69
USP54-212ENST00000480210 GOLGA2Q08379 1002 aa10.72□□□□□ -0.69
USP54-212ENST00000480210 SLC39A6Q13433 755 aa10.72□□□□□ -0.69
USP54-212ENST00000480210 RC3H1Q5TC82 1133 aaKnown RBP10.72□□□□□ -0.69
USP54-212ENST00000480210 MYH16Q9H6N6 1097 aa10.72□□□□□ -0.69
USP54-212ENST00000480210 GTF3C3Q9Y5Q9 886 aa10.72□□□□□ -0.69
USP54-212ENST00000480210 HEG1Q9ULI3 1381 aa10.72□□□□□ -0.69
USP54-212ENST00000480210 STARD3NLO95772 234 aa10.71□□□□□ -0.69
USP54-212ENST00000480210 C5P01031 1676 aa10.71□□□□□ -0.69
USP54-212ENST00000480210 EIF4A1P60842 406 aaKnown RBP10.71□□□□□ -0.69
USP54-212ENST00000480210 PROM2Q8N271 834 aa10.71□□□□□ -0.69
USP54-212ENST00000480210 FLAD1Q8NFF5 587 aa10.71□□□□□ -0.69
USP54-212ENST00000480210 ZNF521Q96K83 1311 aa10.71□□□□□ -0.69
USP54-212ENST00000480210 THUMPD2Q9BTF0 503 aaKnown RBP10.71□□□□□ -0.69
USP54-212ENST00000480210 LAS1LQ9Y4W2 734 aaKnown RBP10.71□□□□□ -0.69
USP54-212ENST00000480210 COL5A3P25940 1745 aaPredicted RBP10.7□□□□□ -0.7
USP54-212ENST00000480210 QSER1Q2KHR3 1735 aa10.7□□□□□ -0.7
USP54-212ENST00000480210 NUP188Q5SRE5 1749 aa10.7□□□□□ -0.7
USP54-212ENST00000480210 KCPQ6ZWJ8 1503 aa10.7□□□□□ -0.7
USP54-212ENST00000480210 E9PSI1 815 aa10.7□□□□□ -0.7
USP54-212ENST00000480210 PTCD1O75127 700 aaKnown RBP10.7□□□□□ -0.7
USP54-212ENST00000480210 ZNF496Q96IT1 587 aaPredicted RBP10.7□□□□□ -0.7
USP54-212ENST00000480210 STK32BQ9NY57 414 aa10.7□□□□□ -0.7
USP54-212ENST00000480210 SALL2Q9Y467 1007 aaPredicted RBP10.7□□□□□ -0.7
USP54-212ENST00000480210 CNTNAP4Q9C0A0 1308 aa10.69□□□□□ -0.7
USP54-212ENST00000480210 GIGYF1O75420 1035 aaPredicted RBP10.69□□□□□ -0.7
USP54-212ENST00000480210 HNRNPUQ00839 825 aaKnown RBP eCLIP10.69□□□□□ -0.7
USP54-212ENST00000480210 ERICH6Q7L0X2 663 aa10.69□□□□□ -0.7
USP54-212ENST00000480210 MBIPQ9NS73 344 aa10.69□□□□□ -0.7
USP54-212ENST00000480210 MYH14Q7Z406 1995 aaKnown RBP10.68□□□□□ -0.7
USP54-212ENST00000480210 LAMB4A4D0S4 1761 aa10.68□□□□□ -0.7
USP54-212ENST00000480210 ERBB4Q15303 1308 aa10.68□□□□□ -0.7
USP54-212ENST00000480210 ZBED9Q6R2W3 1325 aa10.68□□□□□ -0.7
USP54-212ENST00000480210 TJP1Q07157 1748 aa10.68□□□□□ -0.7
USP54-212ENST00000480210 LRRC4BQ9NT99 713 aa10.68□□□□□ -0.7
USP54-212ENST00000480210 MIS18AQ9NYP9 233 aa10.68□□□□□ -0.7
USP54-212ENST00000480210 C4BP0C0L5 1744 aa10.67□□□□□ -0.7
USP54-212ENST00000480210 KCNQ3O43525 872 aa10.67□□□□□ -0.7
USP54-212ENST00000480210 CT47B1P0C2W7 299 aaPredicted RBP10.67□□□□□ -0.7
USP54-212ENST00000480210 ADRA2BP18089 450 aa10.67□□□□□ -0.7
USP54-212ENST00000480210 SLFN5Q08AF3 891 aa10.67□□□□□ -0.7
USP54-212ENST00000480210 SLC15A2Q16348 729 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms