RNA–Protein interactions for RNA: ENST00000479868.6

SEC13-216, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best)

Gene SEC13, Length 2,374 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-216ENST00000479868 DDX17Q92841 729 aaKnown RBP16.23■□□□□ 0.19
SEC13-216ENST00000479868 USP35Q9P2H5 1018 aa16.23■□□□□ 0.19
SEC13-216ENST00000479868 PLEKHO1Q53GL0 409 aaPredicted RBP16.23■□□□□ 0.19
SEC13-216ENST00000479868 PLEKHM2Q8IWE5 1019 aa16.23■□□□□ 0.19
SEC13-216ENST00000479868 CAMTA1Q9Y6Y1 1673 aa16.23■□□□□ 0.19
SEC13-216ENST00000479868 ATF3P18847 181 aa16.22■□□□□ 0.19
SEC13-216ENST00000479868 HDGFL1Q5TGJ6 251 aa16.22■□□□□ 0.19
SEC13-216ENST00000479868 MPRIPQ6WCQ1 1025 aa16.22■□□□□ 0.19
SEC13-216ENST00000479868 C16orf71Q8IYS4 520 aaPredicted RBP16.22■□□□□ 0.19
SEC13-216ENST00000479868 TBC1D2Q9BYX2 928 aa16.22■□□□□ 0.19
SEC13-216ENST00000479868 EIF4A1P60842 406 aaKnown RBP16.22■□□□□ 0.19
SEC13-216ENST00000479868 NFKBIBQ15653 356 aa16.22■□□□□ 0.19
SEC13-216ENST00000479868 KCNQ3O43525 872 aa16.21■□□□□ 0.19
SEC13-216ENST00000479868 DEKP35659 375 aaKnown RBP16.21■□□□□ 0.19
SEC13-216ENST00000479868 ZC3H6P61129 1189 aaKnown RBP16.21■□□□□ 0.19
SEC13-216ENST00000479868 APBB1O00213 710 aa16.21■□□□□ 0.19
SEC13-216ENST00000479868 GSPT1P15170 499 aaKnown RBP16.21■□□□□ 0.19
SEC13-216ENST00000479868 AMOTQ4VCS5 1084 aa16.21■□□□□ 0.19
SEC13-216ENST00000479868 OTUD7AQ8TE49 926 aaPredicted RBP16.2■□□□□ 0.18
SEC13-216ENST00000479868 PHAXQ9H814 394 aaKnown RBP16.2■□□□□ 0.18
SEC13-216ENST00000479868 N4BP2Q86UW6 1770 aaPredicted RBP16.2■□□□□ 0.18
SEC13-216ENST00000479868 SMARCA5O60264 1052 aaPredicted RBP16.2■□□□□ 0.18
SEC13-216ENST00000479868 TEFQ10587 303 aa16.2■□□□□ 0.18
SEC13-216ENST00000479868 TBC1D9Q6ZT07 1266 aa16.2■□□□□ 0.18
SEC13-216ENST00000479868 ERBB3P21860 1342 aa16.19■□□□□ 0.18
SEC13-216ENST00000479868 DCCP43146 1447 aa16.19■□□□□ 0.18
SEC13-216ENST00000479868 GNAI2P04899 355 aa16.19■□□□□ 0.18
SEC13-216ENST00000479868 EIF2S2P20042 333 aaKnown RBP16.19■□□□□ 0.18
SEC13-216ENST00000479868 HSPA2P54652 639 aa16.19■□□□□ 0.18
SEC13-216ENST00000479868 BTBD11A6QL63 1104 aa16.19■□□□□ 0.18
SEC13-216ENST00000479868 RNMTO43148 476 aaKnown RBP16.19■□□□□ 0.18
SEC13-216ENST00000479868 C1orf141Q5JVX7 400 aa16.19■□□□□ 0.18
SEC13-216ENST00000479868 SLKQ9H2G2 1235 aaPredicted RBP16.19■□□□□ 0.18
SEC13-216ENST00000479868 HMMRO75330 724 aa16.18■□□□□ 0.18
SEC13-216ENST00000479868 RBM25P49756 843 aaKnown RBP16.18■□□□□ 0.18
SEC13-216ENST00000479868 PXDNLA1KZ92 1463 aa16.18■□□□□ 0.18
SEC13-216ENST00000479868 TTC22Q5TAA0 569 aa16.18■□□□□ 0.18
SEC13-216ENST00000479868 GNAI3P08754 354 aa16.16■□□□□ 0.18
SEC13-216ENST00000479868 HOXB7P09629 217 aa16.16■□□□□ 0.18
SEC13-216ENST00000479868 CHPF2Q9P2E5 772 aa16.16■□□□□ 0.18
SEC13-216ENST00000479868 NCOA3Q9Y6Q9 1424 aa16.16■□□□□ 0.18
SEC13-216ENST00000479868 CDC45O75419 566 aa16.15■□□□□ 0.18
SEC13-216ENST00000479868 USP44Q9H0E7 712 aa16.15■□□□□ 0.18
SEC13-216ENST00000479868 ANTXR1Q9H6X2 564 aa16.15■□□□□ 0.18
SEC13-216ENST00000479868 OVOS2A0A0G2JMS6 1433 aa16.15■□□□□ 0.18
SEC13-216ENST00000479868 PNMA6EA0A0J9YXQ4 647 aa16.15■□□□□ 0.18
SEC13-216ENST00000479868 CADPS2Q86UW7 1296 aa16.15■□□□□ 0.18
SEC13-216ENST00000479868 CABLES1Q8TDN4 633 aa16.15■□□□□ 0.18
SEC13-216ENST00000479868 FRAT2O75474 233 aaPredicted RBP16.14■□□□□ 0.17
SEC13-216ENST00000479868 EXOC6BQ9Y2D4 811 aa16.14■□□□□ 0.17
SEC13-216ENST00000479868 SIPA1L3O60292 1781 aaPredicted RBP16.14■□□□□ 0.17
SEC13-216ENST00000479868 NPHP3Q7Z494 1330 aa16.14■□□□□ 0.17
SEC13-216ENST00000479868 ANXA1P04083 346 aa16.14■□□□□ 0.17
SEC13-216ENST00000479868 LRRFIP2Q9Y608 721 aaKnown RBP16.14■□□□□ 0.17
SEC13-216ENST00000479868 COL18A1P39060 1754 aa16.13■□□□□ 0.17
SEC13-216ENST00000479868 CRYBG1Q9Y4K1 1723 aa16.13■□□□□ 0.17
SEC13-216ENST00000479868 XIRP1Q702N8 1843 aaKnown RBP16.13■□□□□ 0.17
SEC13-216ENST00000479868 ATP8B2P98198 1209 aa16.13■□□□□ 0.17
SEC13-216ENST00000479868 SPRYD3Q8NCJ5 442 aa16.13■□□□□ 0.17
SEC13-216ENST00000479868 NLRP2Q9NX02 1062 aa16.13■□□□□ 0.17
SEC13-216ENST00000479868 ADAMTS7Q9UKP4 1686 aa16.13■□□□□ 0.17
SEC13-216ENST00000479868 TNS3Q68CZ2 1445 aa16.12■□□□□ 0.17
SEC13-216ENST00000479868 KIF2CQ99661 725 aa16.12■□□□□ 0.17
SEC13-216ENST00000479868 PRAMEF22A3QJZ6 481 aa16.11■□□□□ 0.17
SEC13-216ENST00000479868 PI4KAP2A4QPH2 592 aa16.11■□□□□ 0.17
SEC13-216ENST00000479868 UBTFL1P0CB47 393 aaPredicted RBP16.11■□□□□ 0.17
SEC13-216ENST00000479868 SDSP20132 328 aa16.11■□□□□ 0.17
SEC13-216ENST00000479868 PI4KAP1Q8N8J0 262 aa16.11■□□□□ 0.17
SEC13-216ENST00000479868 SRCIN1Q9C0H9 1055 aa16.11■□□□□ 0.17
SEC13-216ENST00000479868 HEG1Q9ULI3 1381 aa16.11■□□□□ 0.17
SEC13-216ENST00000479868 GIGYF1O75420 1035 aaPredicted RBP16.11■□□□□ 0.17
SEC13-216ENST00000479868 CHRNA2Q15822 529 aa16.11■□□□□ 0.17
SEC13-216ENST00000479868 RAPGEF4Q8WZA2 1011 aa16.11■□□□□ 0.17
SEC13-216ENST00000479868 LMTK3Q96Q04 1460 aa16.1■□□□□ 0.17
SEC13-216ENST00000479868 MEGF6O75095 1541 aa16.1■□□□□ 0.17
SEC13-216ENST00000479868 BEND3Q5T5X7 828 aa16.09■□□□□ 0.17
SEC13-216ENST00000479868 DNAAF4Q8WXU2 420 aa16.09■□□□□ 0.17
SEC13-216ENST00000479868 CHMP4AQ9BY43 222 aa16.09■□□□□ 0.17
SEC13-216ENST00000479868 ADCY9O60503 1353 aa16.09■□□□□ 0.17
SEC13-216ENST00000479868 SPATA31A3Q5VYP0 1347 aa16.09■□□□□ 0.17
SEC13-216ENST00000479868 PDE1AP54750 535 aa16.09■□□□□ 0.17
SEC13-216ENST00000479868 HSCBQ8IWL3 235 aa16.09■□□□□ 0.17
SEC13-216ENST00000479868 DBF4Q9UBU7 674 aaPredicted RBP16.09■□□□□ 0.17
SEC13-216ENST00000479868 IBTKQ9P2D0 1353 aaPredicted RBP16.09■□□□□ 0.17
SEC13-216ENST00000479868 SCN11AQ9UI33 1791 aa16.08■□□□□ 0.17
SEC13-216ENST00000479868 PROSER3Q2NL68 480 aa16.08■□□□□ 0.17
SEC13-216ENST00000479868 LRRCC1Q9C099 1032 aa16.08■□□□□ 0.17
SEC13-216ENST00000479868 OSBPL3Q9H4L5 887 aa16.08■□□□□ 0.17
SEC13-216ENST00000479868 KDM6AO15550 1401 aaPredicted RBP16.08■□□□□ 0.16
SEC13-216ENST00000479868 NBPF7P0C2Y1 421 aaPredicted RBP16.08■□□□□ 0.16
SEC13-216ENST00000479868 SALL3Q9BXA9 1300 aa16.08■□□□□ 0.16
SEC13-216ENST00000479868 CSB-PGBD3P0DP91 1061 aa16.07■□□□□ 0.16
SEC13-216ENST00000479868 SNX21Q969T3 373 aa16.07■□□□□ 0.16
SEC13-216ENST00000479868 TATP17735 454 aaPredicted RBP16.07■□□□□ 0.16
SEC13-216ENST00000479868 TSHZ3Q63HK5 1081 aa16.07■□□□□ 0.16
SEC13-216ENST00000479868 SSH3Q8TE77 659 aa16.07■□□□□ 0.16
SEC13-216ENST00000479868 PHKG2P15735 406 aa16.06■□□□□ 0.16
SEC13-216ENST00000479868 BRINP3Q76B58 766 aa16.06■□□□□ 0.16
SEC13-216ENST00000479868 STRCQ7RTU9 1775 aa16.06■□□□□ 0.16
SEC13-216ENST00000479868 SLC39A6Q13433 755 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms