RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 LNPKQ9C0E8 428 aa15.28■□□□□ 0.04
PTPRF-212ENST00000477970 ADAMTS7Q9UKP4 1686 aa15.27■□□□□ 0.04
PTPRF-212ENST00000477970 SOX12O15370 315 aa15.27■□□□□ 0.04
PTPRF-212ENST00000477970 CCT4P50991 539 aaKnown RBP15.27■□□□□ 0.04
PTPRF-212ENST00000477970 KRT24Q2M2I5 525 aa15.27■□□□□ 0.04
PTPRF-212ENST00000477970 NFKBIBQ15653 356 aa15.27■□□□□ 0.03
PTPRF-212ENST00000477970 ABCC6O95255 1503 aa15.27■□□□□ 0.03
PTPRF-212ENST00000477970 ANKRD45Q5TZF3 282 aa15.27■□□□□ 0.03
PTPRF-212ENST00000477970 C1orf115Q9H7X2 142 aa15.26■□□□□ 0.03
PTPRF-212ENST00000477970 RGPD2P0DJD1 1756 aa15.26■□□□□ 0.03
PTPRF-212ENST00000477970 CEP85Q6P2H3 762 aa15.25■□□□□ 0.03
PTPRF-212ENST00000477970 NWD2Q9ULI1 1742 aa15.25■□□□□ 0.03
PTPRF-212ENST00000477970 SLC4A2P04920 1241 aa15.25■□□□□ 0.03
PTPRF-212ENST00000477970 SPATA31A3Q5VYP0 1347 aa15.25■□□□□ 0.03
PTPRF-212ENST00000477970 ANTXR1Q9H6X2 564 aa15.25■□□□□ 0.03
PTPRF-212ENST00000477970 TAF7Q15545 349 aaPredicted RBP15.24■□□□□ 0.03
PTPRF-212ENST00000477970 CCDC30Q5VVM6 783 aa15.24■□□□□ 0.03
PTPRF-212ENST00000477970 PLEKHG2Q9H7P9 1386 aa15.24■□□□□ 0.03
PTPRF-212ENST00000477970 PSME1Q06323 249 aa15.24■□□□□ 0.03
PTPRF-212ENST00000477970 TBC1D2Q9BYX2 928 aa15.24■□□□□ 0.03
PTPRF-212ENST00000477970 SIPA1L3O60292 1781 aaPredicted RBP15.24■□□□□ 0.03
PTPRF-212ENST00000477970 HOXB7P09629 217 aa15.23■□□□□ 0.03
PTPRF-212ENST00000477970 IL17REQ8NFR9 667 aa15.23■□□□□ 0.03
PTPRF-212ENST00000477970 CHMP4AQ9BY43 222 aa15.23■□□□□ 0.03
PTPRF-212ENST00000477970 TUBGCP6Q96RT7 1819 aa15.22■□□□□ 0.03
PTPRF-212ENST00000477970 SNX21Q969T3 373 aa15.22■□□□□ 0.03
PTPRF-212ENST00000477970 STK31Q9BXU1 1019 aa15.22■□□□□ 0.03
PTPRF-212ENST00000477970 PLCH1Q4KWH8 1693 aa15.22■□□□□ 0.03
PTPRF-212ENST00000477970 MFAP1P55081 439 aaKnown RBP15.22■□□□□ 0.03
PTPRF-212ENST00000477970 DDX17Q92841 729 aaKnown RBP15.22■□□□□ 0.03
PTPRF-212ENST00000477970 KRT28Q7Z3Y7 464 aa15.21■□□□□ 0.03
PTPRF-212ENST00000477970 PLEKHM2Q8IWE5 1019 aa15.21■□□□□ 0.03
PTPRF-212ENST00000477970 NUTM2GQ5VZR2 741 aa15.21■□□□□ 0.03
PTPRF-212ENST00000477970 HMMRO75330 724 aa15.2■□□□□ 0.02
PTPRF-212ENST00000477970 ARHGEF25Q86VW2 580 aa15.2■□□□□ 0.02
PTPRF-212ENST00000477970 MIS18AQ9NYP9 233 aa15.2■□□□□ 0.02
PTPRF-212ENST00000477970 CDC45O75419 566 aa15.2■□□□□ 0.02
PTPRF-212ENST00000477970 MEIS3Q99687 375 aa15.2■□□□□ 0.02
PTPRF-212ENST00000477970 COL14A1Q05707 1796 aaKnown RBP15.19■□□□□ 0.02
PTPRF-212ENST00000477970 AMOTQ4VCS5 1084 aa15.19■□□□□ 0.02
PTPRF-212ENST00000477970 TTC22Q5TAA0 569 aa15.19■□□□□ 0.02
PTPRF-212ENST00000477970 G2E3Q7L622 706 aa15.19■□□□□ 0.02
PTPRF-212ENST00000477970 NRAPQ86VF7 1730 aa15.19■□□□□ 0.02
PTPRF-212ENST00000477970 FLIIQ13045 1269 aa15.19■□□□□ 0.02
PTPRF-212ENST00000477970 AKAP4Q5JQC9 854 aa15.18■□□□□ 0.02
PTPRF-212ENST00000477970 NBPF6Q5VWK0 638 aa15.18■□□□□ 0.02
PTPRF-212ENST00000477970 NBPF4Q96M43 638 aa15.18■□□□□ 0.02
PTPRF-212ENST00000477970 OSBPL3Q9H4L5 887 aa15.18■□□□□ 0.02
PTPRF-212ENST00000477970 GNAI3P08754 354 aa15.18■□□□□ 0.02
PTPRF-212ENST00000477970 TBC1D9Q6ZT07 1266 aa15.18■□□□□ 0.02
PTPRF-212ENST00000477970 GSPT1P15170 499 aaKnown RBP15.17■□□□□ 0.02
PTPRF-212ENST00000477970 GCP02774 474 aa15.17■□□□□ 0.02
PTPRF-212ENST00000477970 GNAI2P04899 355 aa15.17■□□□□ 0.02
PTPRF-212ENST00000477970 COL18A1P39060 1754 aa15.16■□□□□ 0.02
PTPRF-212ENST00000477970 PLEKHO1Q53GL0 409 aaPredicted RBP15.16■□□□□ 0.02
PTPRF-212ENST00000477970 PRKCSHP14314 528 aaPredicted RBP15.15■□□□□ 0.02
PTPRF-212ENST00000477970 RGS17Q9UGC6 210 aaPredicted RBP15.15■□□□□ 0.02
PTPRF-212ENST00000477970 HEG1Q9ULI3 1381 aa15.15■□□□□ 0.02
PTPRF-212ENST00000477970 RGPD5Q99666 1765 aa15.14■□□□□ 0.01
PTPRF-212ENST00000477970 EIF4A1P60842 406 aaKnown RBP15.14■□□□□ 0.01
PTPRF-212ENST00000477970 HSCBQ8IWL3 235 aa15.14■□□□□ 0.01
PTPRF-212ENST00000477970 LTV1Q96GA3 475 aaPredicted RBP15.14■□□□□ 0.01
PTPRF-212ENST00000477970 IBTKQ9P2D0 1353 aaPredicted RBP15.14■□□□□ 0.01
PTPRF-212ENST00000477970 KIF2CQ99661 725 aa15.14■□□□□ 0.01
PTPRF-212ENST00000477970 SLIT2O94813 1529 aa15.14■□□□□ 0.01
PTPRF-212ENST00000477970 DDIT3P35638 169 aa15.14■□□□□ 0.01
PTPRF-212ENST00000477970 ATP8B2P98198 1209 aa15.13■□□□□ 0.01
PTPRF-212ENST00000477970 SCN11AQ9UI33 1791 aa15.13■□□□□ 0.01
PTPRF-212ENST00000477970 SALL3Q9BXA9 1300 aa15.13■□□□□ 0.01
PTPRF-212ENST00000477970 FRAT2O75474 233 aaPredicted RBP15.13■□□□□ 0.01
PTPRF-212ENST00000477970 GSE1Q14687 1217 aa15.13■□□□□ 0.01
PTPRF-212ENST00000477970 USHBP1Q8N6Y0 703 aa15.13■□□□□ 0.01
PTPRF-212ENST00000477970 F6X3S4 739 aa15.12■□□□□ 0.01
PTPRF-212ENST00000477970 FKBP5Q13451 457 aaPredicted RBP15.12■□□□□ 0.01
PTPRF-212ENST00000477970 ZNF772Q68DY9 489 aaPredicted RBP15.12■□□□□ 0.01
PTPRF-212ENST00000477970 CHMP5Q9NZZ3 219 aa15.12■□□□□ 0.01
PTPRF-212ENST00000477970 HDGFL1Q5TGJ6 251 aa15.12■□□□□ 0.01
PTPRF-212ENST00000477970 PKD1L3Q7Z443 1732 aa15.11■□□□□ 0.01
PTPRF-212ENST00000477970 XPCQ01831 940 aaPredicted RBP15.11■□□□□ 0.01
PTPRF-212ENST00000477970 SLC4A10Q6U841 1118 aa15.11■□□□□ 0.01
PTPRF-212ENST00000477970 FNBP4Q8N3X1 1017 aaPredicted RBP15.11■□□□□ 0.01
PTPRF-212ENST00000477970 CIZ1Q9ULV3 898 aaPredicted RBP15.11■□□□□ 0.01
PTPRF-212ENST00000477970 AOX1Q06278 1338 aa15.11■□□□□ 0.01
PTPRF-212ENST00000477970 ANKRD24Q8TF21 1146 aa15.1■□□□□ 0.01
PTPRF-212ENST00000477970 ATRNO75882 1429 aa15.1■□□□□ 0.01
PTPRF-212ENST00000477970 RNMTO43148 476 aaKnown RBP15.1■□□□□ 0.01
PTPRF-212ENST00000477970 ZNF530Q6P9A1 599 aaPredicted RBP15.1■□□□□ 0.01
PTPRF-212ENST00000477970 PARP4Q9UKK3 1724 aaKnown RBP15.1■□□□□ 0.01
PTPRF-212ENST00000477970 MRC1P22897 1456 aa15.09■□□□□ 0.01
PTPRF-212ENST00000477970 MEX3CQ5U5Q3 659 aaKnown RBP15.09■□□□□ 0.01
PTPRF-212ENST00000477970 CASC1Q6TDU7 716 aa15.09■□□□□ 0.01
PTPRF-212ENST00000477970 SLKQ9H2G2 1235 aaPredicted RBP15.09■□□□□ 0.01
PTPRF-212ENST00000477970 LGR6Q9HBX8 967 aa15.09■□□□□ 0.01
PTPRF-212ENST00000477970 C16orf71Q8IYS4 520 aaPredicted RBP15.09■□□□□ 0.01
PTPRF-212ENST00000477970 USP44Q9H0E7 712 aa15.08■□□□□ 0
PTPRF-212ENST00000477970 ERBB3P21860 1342 aa15.08■□□□□ 0
PTPRF-212ENST00000477970 SDSP20132 328 aa15.08■□□□□ 0
PTPRF-212ENST00000477970 SSH3Q8TE77 659 aa15.08■□□□□ 0
PTPRF-212ENST00000477970 SRCIN1Q9C0H9 1055 aa15.08■□□□□ 0
PTPRF-212ENST00000477970 STAP2Q9UGK3 403 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms