RNA–Protein interactions for RNA: ENST00000476494.1

CLDN4-205, Transcript of claudin 4, humanhuman

TSL 4

Gene CLDN4, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-205ENST00000476494 USP31Q70CQ4 1352 aa9.4□□□□□ -0.9
CLDN4-205ENST00000476494 TTC21AQ8NDW8 1320 aa9.4□□□□□ -0.9
CLDN4-205ENST00000476494 MAP2K1Q02750 393 aaPredicted RBP9.4□□□□□ -0.9
CLDN4-205ENST00000476494 MEGF6O75095 1541 aa9.4□□□□□ -0.91
CLDN4-205ENST00000476494 ITGB4P16144 1822 aa9.4□□□□□ -0.91
CLDN4-205ENST00000476494 THSD7BQ9C0I4 1608 aa9.39□□□□□ -0.91
CLDN4-205ENST00000476494 TMEM88BA6NKF7 163 aa9.39□□□□□ -0.91
CLDN4-205ENST00000476494 LMNB1P20700 586 aa9.39□□□□□ -0.91
CLDN4-205ENST00000476494 NLGN1Q8N2Q7 840 aa9.39□□□□□ -0.91
CLDN4-205ENST00000476494 ZNF692Q9BU19 519 aaPredicted RBP9.39□□□□□ -0.91
CLDN4-205ENST00000476494 CCDC87Q9NVE4 849 aa9.39□□□□□ -0.91
CLDN4-205ENST00000476494 KDM2AQ9Y2K7 1162 aa9.39□□□□□ -0.91
CLDN4-205ENST00000476494 RGPD2P0DJD1 1756 aa9.39□□□□□ -0.91
CLDN4-205ENST00000476494 TIAM2Q8IVF5 1701 aa9.39□□□□□ -0.91
CLDN4-205ENST00000476494 WDR33Q9C0J8 1336 aaKnown RBP9.38□□□□□ -0.91
CLDN4-205ENST00000476494 TMF1P82094 1093 aa9.38□□□□□ -0.91
CLDN4-205ENST00000476494 ITPK1Q13572 414 aa9.38□□□□□ -0.91
CLDN4-205ENST00000476494 DCAF11Q8TEB1 546 aa9.38□□□□□ -0.91
CLDN4-205ENST00000476494 STAC3Q96MF2 364 aa9.38□□□□□ -0.91
CLDN4-205ENST00000476494 DICER1Q9UPY3 1922 aaKnown RBP9.38□□□□□ -0.91
CLDN4-205ENST00000476494 GYS1P13807 737 aa9.37□□□□□ -0.91
CLDN4-205ENST00000476494 DEFB115Q30KQ5 88 aa9.37□□□□□ -0.91
CLDN4-205ENST00000476494 CHRNA5P30532 468 aa9.36□□□□□ -0.91
CLDN4-205ENST00000476494 IP6K1Q92551 441 aa9.36□□□□□ -0.91
CLDN4-205ENST00000476494 SMARCC1Q92922 1105 aaPredicted RBP9.36□□□□□ -0.91
CLDN4-205ENST00000476494 LTBP1Q14766 1721 aa9.36□□□□□ -0.91
CLDN4-205ENST00000476494 LOC102724428A0A0B4J2F2 783 aa9.35□□□□□ -0.91
CLDN4-205ENST00000476494 NFKBIEO00221 500 aa9.35□□□□□ -0.91
CLDN4-205ENST00000476494 GNPATO15228 680 aa9.35□□□□□ -0.91
CLDN4-205ENST00000476494 SIK1P57059 783 aa9.35□□□□□ -0.91
CLDN4-205ENST00000476494 MPRIPQ6WCQ1 1025 aa9.35□□□□□ -0.91
CLDN4-205ENST00000476494 PIGBQ92521 554 aa9.35□□□□□ -0.91
CLDN4-205ENST00000476494 CFAP44Q96MT7 982 aa9.35□□□□□ -0.91
CLDN4-205ENST00000476494 ARHGEF1Q92888 912 aaKnown RBP9.34□□□□□ -0.91
CLDN4-205ENST00000476494 ADAMTSL1Q8N6G6 1762 aa9.34□□□□□ -0.91
CLDN4-205ENST00000476494 MYH14Q7Z406 1995 aaKnown RBP9.33□□□□□ -0.92
CLDN4-205ENST00000476494 DDR1Q08345 913 aa9.33□□□□□ -0.92
CLDN4-205ENST00000476494 NBPF1Q3BBV0 1214 aa9.33□□□□□ -0.92
CLDN4-205ENST00000476494 HABP4Q5JVS0 413 aaKnown RBP9.33□□□□□ -0.92
CLDN4-205ENST00000476494 DPY19L2Q6NUT2 758 aa9.33□□□□□ -0.92
CLDN4-205ENST00000476494 TSKSQ9UJT2 592 aa9.33□□□□□ -0.92
CLDN4-205ENST00000476494 PARP3Q9Y6F1 533 aa9.33□□□□□ -0.92
CLDN4-205ENST00000476494 A0A0C4DFX4 3053 aa9.33□□□□□ -0.92
CLDN4-205ENST00000476494 MON2Q7Z3U7 1717 aa9.32□□□□□ -0.92
CLDN4-205ENST00000476494 CYP27B1O15528 508 aa9.32□□□□□ -0.92
CLDN4-205ENST00000476494 TRAPPC3LQ5T215 181 aa9.32□□□□□ -0.92
CLDN4-205ENST00000476494 LDHDQ86WU2 507 aa9.32□□□□□ -0.92
CLDN4-205ENST00000476494 CGNL1Q0VF96 1302 aa9.31□□□□□ -0.92
CLDN4-205ENST00000476494 CENPJQ9HC77 1338 aaPredicted RBP9.31□□□□□ -0.92
CLDN4-205ENST00000476494 SCN4AP35499 1836 aa9.31□□□□□ -0.92
CLDN4-205ENST00000476494 DDNO94850 711 aaPredicted RBP9.31□□□□□ -0.92
CLDN4-205ENST00000476494 SOX10P56693 466 aa9.31□□□□□ -0.92
CLDN4-205ENST00000476494 NME9Q86XW9 330 aa9.31□□□□□ -0.92
CLDN4-205ENST00000476494 LTV1Q96GA3 475 aaPredicted RBP9.31□□□□□ -0.92
CLDN4-205ENST00000476494 SLC4A9Q96Q91 983 aa9.31□□□□□ -0.92
CLDN4-205ENST00000476494 TAF1DQ9H5J8 278 aaPredicted RBP9.31□□□□□ -0.92
CLDN4-205ENST00000476494 SBNO2Q9Y2G9 1366 aa9.31□□□□□ -0.92
CLDN4-205ENST00000476494 CD163L1Q9NR16 1453 aa9.31□□□□□ -0.92
CLDN4-205ENST00000476494 MKI67P46013 3256 aaKnown RBP9.31□□□□□ -0.92
CLDN4-205ENST00000476494 SZT2Q5T011 3432 aa9.3□□□□□ -0.92
CLDN4-205ENST00000476494 FER1L6Q2WGJ9 1857 aa9.3□□□□□ -0.92
CLDN4-205ENST00000476494 DLEC1Q9Y238 1755 aa9.3□□□□□ -0.92
CLDN4-205ENST00000476494 KTN1Q86UP2 1357 aaKnown RBP9.3□□□□□ -0.92
CLDN4-205ENST00000476494 ADRA2BP18089 450 aa9.3□□□□□ -0.92
CLDN4-205ENST00000476494 DGKZQ13574 1117 aa9.3□□□□□ -0.92
CLDN4-205ENST00000476494 NBPF6Q5VWK0 638 aa9.3□□□□□ -0.92
CLDN4-205ENST00000476494 L3MBTL3Q96JM7 780 aaPredicted RBP9.3□□□□□ -0.92
CLDN4-205ENST00000476494 NBPF4Q96M43 638 aa9.3□□□□□ -0.92
CLDN4-205ENST00000476494 ASAP1Q9ULH1 1129 aa9.3□□□□□ -0.92
CLDN4-205ENST00000476494 TM4SF1P30408 202 aa9.29□□□□□ -0.92
CLDN4-205ENST00000476494 FXR1P51114 621 aaKnown RBP eCLIP9.29□□□□□ -0.92
CLDN4-205ENST00000476494 NKX1-1Q15270 411 aaPredicted RBP9.29□□□□□ -0.92
CLDN4-205ENST00000476494 RC3H1Q5TC82 1133 aaKnown RBP9.29□□□□□ -0.92
CLDN4-205ENST00000476494 GCC1Q96CN9 775 aa9.29□□□□□ -0.92
CLDN4-205ENST00000476494 CAPNS2Q96L46 248 aa9.29□□□□□ -0.92
CLDN4-205ENST00000476494 GPR101Q96P66 508 aaPredicted RBP9.29□□□□□ -0.92
CLDN4-205ENST00000476494 RTCBQ9Y3I0 505 aaKnown RBP9.29□□□□□ -0.92
CLDN4-205ENST00000476494 POLRMTO00411 1230 aaKnown RBP9.28□□□□□ -0.92
CLDN4-205ENST00000476494 DLL1O00548 723 aa9.28□□□□□ -0.92
CLDN4-205ENST00000476494 ATP6V1AP38606 617 aa9.28□□□□□ -0.92
CLDN4-205ENST00000476494 FKBP8Q14318 412 aa9.28□□□□□ -0.92
CLDN4-205ENST00000476494 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.28□□□□□ -0.92
CLDN4-205ENST00000476494 ZNF831Q5JPB2 1677 aa9.28□□□□□ -0.92
CLDN4-205ENST00000476494 MAP3K19Q56UN5 1328 aa9.28□□□□□ -0.92
CLDN4-205ENST00000476494 COL5A3P25940 1745 aaPredicted RBP9.28□□□□□ -0.92
CLDN4-205ENST00000476494 KDRP35968 1356 aa9.27□□□□□ -0.93
CLDN4-205ENST00000476494 CUL9Q8IWT3 2517 aa9.27□□□□□ -0.93
CLDN4-205ENST00000476494 AFDNP55196 1824 aaKnown RBP9.27□□□□□ -0.93
CLDN4-205ENST00000476494 RPS6KA4O75676 772 aa9.27□□□□□ -0.93
CLDN4-205ENST00000476494 HOXC9P31274 260 aa9.27□□□□□ -0.93
CLDN4-205ENST00000476494 MAP2K2P36507 400 aa9.27□□□□□ -0.93
CLDN4-205ENST00000476494 ERFEQ4G0M1 354 aa9.27□□□□□ -0.93
CLDN4-205ENST00000476494 CYP4F22Q6NT55 531 aa9.27□□□□□ -0.93
CLDN4-205ENST00000476494 ATG3Q9NT62 314 aa9.27□□□□□ -0.93
CLDN4-205ENST00000476494 PCDH11XQ9BZA7 1347 aa9.27□□□□□ -0.93
CLDN4-205ENST00000476494 PCDH11YQ9BZA8 1340 aa9.27□□□□□ -0.93
CLDN4-205ENST00000476494 ADAMTS7Q9UKP4 1686 aa9.26□□□□□ -0.93
CLDN4-205ENST00000476494 NRXN2Q9P2S2 1712 aa9.26□□□□□ -0.93
CLDN4-205ENST00000476494 FBLN1P23142 703 aa9.26□□□□□ -0.93
CLDN4-205ENST00000476494 CNTROBQ8N137 903 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms