RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 PRPF38BQ5VTL8 546 aaKnown RBP7.14□□□□□ -1.27
USP4-209ENST00000475873 CHADLQ6NUI6 762 aa7.14□□□□□ -1.27
USP4-209ENST00000475873 USP31Q70CQ4 1352 aa7.14□□□□□ -1.27
USP4-209ENST00000475873 TTC21AQ8NDW8 1320 aa7.14□□□□□ -1.27
USP4-209ENST00000475873 ZCRB1Q8TBF4 217 aaKnown RBP7.14□□□□□ -1.27
USP4-209ENST00000475873 DCAF11Q8TEB1 546 aa7.14□□□□□ -1.27
USP4-209ENST00000475873 MCOLN1Q9GZU1 580 aa7.14□□□□□ -1.27
USP4-209ENST00000475873 PIM2Q9P1W9 311 aa7.14□□□□□ -1.27
USP4-209ENST00000475873 CASP8AP2Q9UKL3 1982 aa7.14□□□□□ -1.27
USP4-209ENST00000475873 GNPATO15228 680 aa7.13□□□□□ -1.27
USP4-209ENST00000475873 ITGBL1O95965 494 aaPredicted RBP7.13□□□□□ -1.27
USP4-209ENST00000475873 NBPF1Q3BBV0 1214 aa7.13□□□□□ -1.27
USP4-209ENST00000475873 NME9Q86XW9 330 aa7.13□□□□□ -1.27
USP4-209ENST00000475873 CFAP44Q96MT7 982 aa7.13□□□□□ -1.27
USP4-209ENST00000475873 TSKSQ9UJT2 592 aa7.13□□□□□ -1.27
USP4-209ENST00000475873 SZT2Q5T011 3432 aa7.13□□□□□ -1.27
USP4-209ENST00000475873 MON2Q7Z3U7 1717 aa7.13□□□□□ -1.27
USP4-209ENST00000475873 CUL9Q8IWT3 2517 aa7.12□□□□□ -1.27
USP4-209ENST00000475873 A0A0C4DFX4 3053 aa7.12□□□□□ -1.27
USP4-209ENST00000475873 RASSF10A6NK89 507 aa7.12□□□□□ -1.27
USP4-209ENST00000475873 NFKBIEO00221 500 aa7.12□□□□□ -1.27
USP4-209ENST00000475873 GYS1P13807 737 aa7.12□□□□□ -1.27
USP4-209ENST00000475873 LMNB1P20700 586 aa7.12□□□□□ -1.27
USP4-209ENST00000475873 MPRIPQ6WCQ1 1025 aa7.12□□□□□ -1.27
USP4-209ENST00000475873 LTV1Q96GA3 475 aaPredicted RBP7.12□□□□□ -1.27
USP4-209ENST00000475873 CCDC87Q9NVE4 849 aa7.12□□□□□ -1.27
USP4-209ENST00000475873 LOC102724428A0A0B4J2F2 783 aa7.11□□□□□ -1.27
USP4-209ENST00000475873 SIK1P57059 783 aa7.11□□□□□ -1.27
USP4-209ENST00000475873 TMF1P82094 1093 aa7.11□□□□□ -1.27
USP4-209ENST00000475873 DDR1Q08345 913 aa7.11□□□□□ -1.27
USP4-209ENST00000475873 PIGBQ92521 554 aa7.11□□□□□ -1.27
USP4-209ENST00000475873 CD163L1Q9NR16 1453 aa7.11□□□□□ -1.27
USP4-209ENST00000475873 ADAMTSL1Q8N6G6 1762 aa7.1□□□□□ -1.27
USP4-209ENST00000475873 SBNO2Q9Y2G9 1366 aa7.1□□□□□ -1.27
USP4-209ENST00000475873 WDR33Q9C0J8 1336 aaKnown RBP7.1□□□□□ -1.27
USP4-209ENST00000475873 CENPJQ9HC77 1338 aaPredicted RBP7.1□□□□□ -1.27
USP4-209ENST00000475873 MYH14Q7Z406 1995 aaKnown RBP7.1□□□□□ -1.27
USP4-209ENST00000475873 TMEM88BA6NKF7 163 aa7.1□□□□□ -1.27
USP4-209ENST00000475873 CYP27B1O15528 508 aa7.1□□□□□ -1.27
USP4-209ENST00000475873 SOX10P56693 466 aa7.1□□□□□ -1.27
USP4-209ENST00000475873 IP6K1Q92551 441 aa7.1□□□□□ -1.27
USP4-209ENST00000475873 KTN1Q86UP2 1357 aaKnown RBP7.09□□□□□ -1.27
USP4-209ENST00000475873 DICER1Q9UPY3 1922 aaKnown RBP7.09□□□□□ -1.27
USP4-209ENST00000475873 FBLN1P23142 703 aa7.09□□□□□ -1.27
USP4-209ENST00000475873 MAP2K1Q02750 393 aaPredicted RBP7.09□□□□□ -1.27
USP4-209ENST00000475873 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.09□□□□□ -1.27
USP4-209ENST00000475873 NLGN1Q8N2Q7 840 aa7.09□□□□□ -1.27
USP4-209ENST00000475873 USHBP1Q8N6Y0 703 aa7.09□□□□□ -1.27
USP4-209ENST00000475873 ARHGEF1Q92888 912 aaKnown RBP7.09□□□□□ -1.27
USP4-209ENST00000475873 SLC4A9Q96Q91 983 aa7.09□□□□□ -1.27
USP4-209ENST00000475873 KDRP35968 1356 aa7.08□□□□□ -1.28
USP4-209ENST00000475873 DLEC1Q9Y238 1755 aa7.08□□□□□ -1.28
USP4-209ENST00000475873 DDNO94850 711 aaPredicted RBP7.08□□□□□ -1.28
USP4-209ENST00000475873 DEFB115Q30KQ5 88 aa7.08□□□□□ -1.28
USP4-209ENST00000475873 NBPF6Q5VWK0 638 aa7.08□□□□□ -1.28
USP4-209ENST00000475873 SMARCC1Q92922 1105 aaPredicted RBP7.08□□□□□ -1.28
USP4-209ENST00000475873 NBPF4Q96M43 638 aa7.08□□□□□ -1.28
USP4-209ENST00000475873 ZNF692Q9BU19 519 aaPredicted RBP7.08□□□□□ -1.28
USP4-209ENST00000475873 ASAP1Q9ULH1 1129 aa7.08□□□□□ -1.28
USP4-209ENST00000475873 PARP3Q9Y6F1 533 aa7.08□□□□□ -1.28
USP4-209ENST00000475873 COL5A3P25940 1745 aaPredicted RBP7.07□□□□□ -1.28
USP4-209ENST00000475873 ADAMTS7Q9UKP4 1686 aa7.07□□□□□ -1.28
USP4-209ENST00000475873 FMR1Q06787 632 aaKnown RBP eCLIP7.07□□□□□ -1.28
USP4-209ENST00000475873 FKBP8Q14318 412 aa7.07□□□□□ -1.28
USP4-209ENST00000475873 LDHDQ86WU2 507 aa7.07□□□□□ -1.28
USP4-209ENST00000475873 SRP68Q9UHB9 627 aaKnown RBP7.07□□□□□ -1.28
USP4-209ENST00000475873 MAP3K19Q56UN5 1328 aa7.06□□□□□ -1.28
USP4-209ENST00000475873 HOXC9P31274 260 aa7.06□□□□□ -1.28
USP4-209ENST00000475873 DGKZQ13574 1117 aa7.06□□□□□ -1.28
USP4-209ENST00000475873 HABP4Q5JVS0 413 aaKnown RBP7.06□□□□□ -1.28
USP4-209ENST00000475873 TRAPPC3LQ5T215 181 aa7.06□□□□□ -1.28
USP4-209ENST00000475873 TAF1DQ9H5J8 278 aaPredicted RBP7.06□□□□□ -1.28
USP4-209ENST00000475873 FER1L6Q2WGJ9 1857 aa7.06□□□□□ -1.28
USP4-209ENST00000475873 AFDNP55196 1824 aaKnown RBP7.06□□□□□ -1.28
USP4-209ENST00000475873 PCDH11XQ9BZA7 1347 aa7.05□□□□□ -1.28
USP4-209ENST00000475873 PCDH11YQ9BZA8 1340 aa7.05□□□□□ -1.28
USP4-209ENST00000475873 COL6A3P12111 3177 aa7.05□□□□□ -1.28
USP4-209ENST00000475873 POLRMTO00411 1230 aaKnown RBP7.05□□□□□ -1.28
USP4-209ENST00000475873 AOC2O75106 756 aa7.05□□□□□ -1.28
USP4-209ENST00000475873 ATP6V1AP38606 617 aa7.05□□□□□ -1.28
USP4-209ENST00000475873 CYP4F22Q6NT55 531 aa7.05□□□□□ -1.28
USP4-209ENST00000475873 CAPNS2Q96L46 248 aa7.05□□□□□ -1.28
USP4-209ENST00000475873 RTCBQ9Y3I0 505 aaKnown RBP7.05□□□□□ -1.28
USP4-209ENST00000475873 CARMIL3Q8ND23 1372 aa7.05□□□□□ -1.28
USP4-209ENST00000475873 NRXN2Q9P2S2 1712 aa7.04□□□□□ -1.28
USP4-209ENST00000475873 SCN4AP35499 1836 aa7.04□□□□□ -1.28
USP4-209ENST00000475873 FXR1P51114 621 aaKnown RBP eCLIP7.04□□□□□ -1.28
USP4-209ENST00000475873 MAP1SQ66K74 1059 aaPredicted RBP7.04□□□□□ -1.28
USP4-209ENST00000475873 DPY19L2Q6NUT2 758 aa7.04□□□□□ -1.28
USP4-209ENST00000475873 L3MBTL3Q96JM7 780 aaPredicted RBP7.04□□□□□ -1.28
USP4-209ENST00000475873 STAC3Q96MF2 364 aa7.04□□□□□ -1.28
USP4-209ENST00000475873 GPR101Q96P66 508 aaPredicted RBP7.04□□□□□ -1.28
USP4-209ENST00000475873 ATG3Q9NT62 314 aa7.04□□□□□ -1.28
USP4-209ENST00000475873 CGNL1Q0VF96 1302 aa7.03□□□□□ -1.28
USP4-209ENST00000475873 EVC2Q86UK5 1308 aa7.03□□□□□ -1.28
USP4-209ENST00000475873 ZNF831Q5JPB2 1677 aa7.03□□□□□ -1.28
USP4-209ENST00000475873 TRIOBPQ9H2D6 2365 aa7.03□□□□□ -1.28
USP4-209ENST00000475873 RPS6KA4O75676 772 aa7.03□□□□□ -1.28
USP4-209ENST00000475873 ADRA2BP18089 450 aa7.03□□□□□ -1.28
USP4-209ENST00000475873 HMGB2P26583 209 aaKnown RBP7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms