RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 C1orf115Q9H7X2 142 aa12.33□□□□□ -0.44
USP39-214ENST00000474572 AXIN2Q9Y2T1 843 aa12.33□□□□□ -0.44
USP39-214ENST00000474572 SPATA31A3Q5VYP0 1347 aa12.33□□□□□ -0.44
USP39-214ENST00000474572 MRC1P22897 1456 aa12.33□□□□□ -0.44
USP39-214ENST00000474572 EIF4A1P60842 406 aaKnown RBP12.32□□□□□ -0.44
USP39-214ENST00000474572 CEP85Q6P2H3 762 aa12.32□□□□□ -0.44
USP39-214ENST00000474572 TBC1D32Q96NH3 1257 aa12.32□□□□□ -0.44
USP39-214ENST00000474572 STK31Q9BXU1 1019 aa12.32□□□□□ -0.44
USP39-214ENST00000474572 RNMTO43148 476 aaKnown RBP12.31□□□□□ -0.44
USP39-214ENST00000474572 FLIIQ13045 1269 aa12.31□□□□□ -0.44
USP39-214ENST00000474572 BMP2KLQ5H9B9 411 aa12.31□□□□□ -0.44
USP39-214ENST00000474572 ZNF530Q6P9A1 599 aaPredicted RBP12.31□□□□□ -0.44
USP39-214ENST00000474572 LGR6Q9HBX8 967 aa12.31□□□□□ -0.44
USP39-214ENST00000474572 TUBGCP6Q96RT7 1819 aa12.31□□□□□ -0.44
USP39-214ENST00000474572 KDM4FA0A1W2PPD8 638 aa12.3□□□□□ -0.44
USP39-214ENST00000474572 HSPA2P54652 639 aa12.3□□□□□ -0.44
USP39-214ENST00000474572 MEIS3Q99687 375 aa12.3□□□□□ -0.44
USP39-214ENST00000474572 CHMP4AQ9BY43 222 aa12.3□□□□□ -0.44
USP39-214ENST00000474572 LNPKQ9C0E8 428 aa12.3□□□□□ -0.44
USP39-214ENST00000474572 C5P01031 1676 aa12.29□□□□□ -0.44
USP39-214ENST00000474572 MEGF6O75095 1541 aa12.29□□□□□ -0.44
USP39-214ENST00000474572 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.29□□□□□ -0.442e-6■□□□□ 8.4
USP39-214ENST00000474572 ZBTB7CA1YPR0 619 aa12.28□□□□□ -0.44
USP39-214ENST00000474572 ANKRD45Q5TZF3 282 aa12.28□□□□□ -0.44
USP39-214ENST00000474572 LMOD2Q6P5Q4 547 aa12.28□□□□□ -0.44
USP39-214ENST00000474572 KDM6AO15550 1401 aaPredicted RBP12.28□□□□□ -0.44
USP39-214ENST00000474572 GLI3P10071 1580 aa12.27□□□□□ -0.44
USP39-214ENST00000474572 F6X3S4 739 aa12.27□□□□□ -0.45
USP39-214ENST00000474572 TEFQ10587 303 aa12.27□□□□□ -0.45
USP39-214ENST00000474572 C1orf141Q5JVX7 400 aa12.27□□□□□ -0.45
USP39-214ENST00000474572 HDGFL1Q5TGJ6 251 aa12.27□□□□□ -0.45
USP39-214ENST00000474572 BRINP3Q76B58 766 aa12.27□□□□□ -0.45
USP39-214ENST00000474572 UPF2Q9HAU5 1272 aaKnown RBP12.27□□□□□ -0.45
USP39-214ENST00000474572 SOS2Q07890 1332 aaPredicted RBP12.27□□□□□ -0.45
USP39-214ENST00000474572 LAMB4A4D0S4 1761 aa12.27□□□□□ -0.45
USP39-214ENST00000474572 SHANK3Q9BYB0 1731 aa12.26□□□□□ -0.45
USP39-214ENST00000474572 GNAI3P08754 354 aa12.26□□□□□ -0.45
USP39-214ENST00000474572 ZC3H6P61129 1189 aaKnown RBP12.26□□□□□ -0.45
USP39-214ENST00000474572 DDX17Q92841 729 aaKnown RBP12.26□□□□□ -0.45
USP39-214ENST00000474572 IBTKQ9P2D0 1353 aaPredicted RBP12.26□□□□□ -0.45
USP39-214ENST00000474572 BTBD11A6QL63 1104 aa12.25□□□□□ -0.45
USP39-214ENST00000474572 GNAI2P04899 355 aa12.25□□□□□ -0.45
USP39-214ENST00000474572 FKBP5Q13451 457 aaPredicted RBP12.25□□□□□ -0.45
USP39-214ENST00000474572 MPRIPQ6WCQ1 1025 aa12.25□□□□□ -0.45
USP39-214ENST00000474572 PAPPAQ13219 1627 aa12.25□□□□□ -0.45
USP39-214ENST00000474572 KCNQ3O43525 872 aa12.24□□□□□ -0.45
USP39-214ENST00000474572 HMMRO75330 724 aa12.24□□□□□ -0.45
USP39-214ENST00000474572 PLEKHM2Q8IWE5 1019 aa12.24□□□□□ -0.45
USP39-214ENST00000474572 UBR2Q8IWV8 1755 aa12.23□□□□□ -0.45
USP39-214ENST00000474572 PHKG2P15735 406 aa12.23□□□□□ -0.45
USP39-214ENST00000474572 TATP17735 454 aaPredicted RBP12.23□□□□□ -0.45
USP39-214ENST00000474572 RBM25P49756 843 aaKnown RBP12.23□□□□□ -0.45
USP39-214ENST00000474572 SLC4A10Q6U841 1118 aa12.23□□□□□ -0.45
USP39-214ENST00000474572 RAPGEF4Q8WZA2 1011 aa12.23□□□□□ -0.45
USP39-214ENST00000474572 COL5A2P05997 1499 aaPredicted RBP12.22□□□□□ -0.45
USP39-214ENST00000474572 ADCY9O60503 1353 aa12.22□□□□□ -0.45
USP39-214ENST00000474572 SALL3Q9BXA9 1300 aa12.22□□□□□ -0.45
USP39-214ENST00000474572 ZNF335Q9H4Z2 1342 aaPredicted RBP12.22□□□□□ -0.45
USP39-214ENST00000474572 GIGYF1O75420 1035 aaPredicted RBP12.22□□□□□ -0.45
USP39-214ENST00000474572 GSPT1P15170 499 aaKnown RBP12.22□□□□□ -0.45
USP39-214ENST00000474572 ATP8B2P98198 1209 aa12.22□□□□□ -0.45
USP39-214ENST00000474572 TTC22Q5TAA0 569 aa12.22□□□□□ -0.45
USP39-214ENST00000474572 C22orf23Q9BZE7 217 aa12.22□□□□□ -0.45
USP39-214ENST00000474572 OSBPL3Q9H4L5 887 aa12.22□□□□□ -0.45
USP39-214ENST00000474572 PHAXQ9H814 394 aaKnown RBP12.22□□□□□ -0.45
USP39-214ENST00000474572 SPG7Q9UQ90 795 aa12.22□□□□□ -0.45
USP39-214ENST00000474572 BECN1Q14457 450 aa12.21□□□□□ -0.45
USP39-214ENST00000474572 NECTIN2Q92692 538 aa12.21□□□□□ -0.45
USP39-214ENST00000474572 USP44Q9H0E7 712 aa12.21□□□□□ -0.45
USP39-214ENST00000474572 SLC52A2Q9HAB3 445 aa12.21□□□□□ -0.45
USP39-214ENST00000474572 CHPF2Q9P2E5 772 aa12.21□□□□□ -0.45
USP39-214ENST00000474572 DBF4Q9UBU7 674 aaPredicted RBP12.21□□□□□ -0.45
USP39-214ENST00000474572 COL22A1Q8NFW1 1626 aaPredicted RBP12.2□□□□□ -0.46
USP39-214ENST00000474572 EIF5BO60841 1220 aaKnown RBP12.2□□□□□ -0.46
USP39-214ENST00000474572 MFAP1P55081 439 aaKnown RBP12.2□□□□□ -0.46
USP39-214ENST00000474572 BEND3Q5T5X7 828 aa12.2□□□□□ -0.46
USP39-214ENST00000474572 IFNL2Q8IZJ0 200 aa12.2□□□□□ -0.46
USP39-214ENST00000474572 CABLES1Q8TDN4 633 aa12.2□□□□□ -0.46
USP39-214ENST00000474572 DNAAF4Q8WXU2 420 aa12.2□□□□□ -0.46
USP39-214ENST00000474572 NLRP2Q9NX02 1062 aa12.2□□□□□ -0.46
USP39-214ENST00000474572 USP35Q9P2H5 1018 aa12.2□□□□□ -0.46
USP39-214ENST00000474572 WDR17Q8IZU2 1322 aa12.19□□□□□ -0.46
USP39-214ENST00000474572 CDC45O75419 566 aa12.19□□□□□ -0.46
USP39-214ENST00000474572 SLC4A3P48751 1232 aa12.19□□□□□ -0.46
USP39-214ENST00000474572 POLA2Q14181 598 aa12.19□□□□□ -0.46
USP39-214ENST00000474572 TBC1D9Q6ZT07 1266 aa12.19□□□□□ -0.46
USP39-214ENST00000474572 SSH3Q8TE77 659 aa12.19□□□□□ -0.46
USP39-214ENST00000474572 SRCIN1Q9C0H9 1055 aa12.19□□□□□ -0.46
USP39-214ENST00000474572 SLAIN2Q9P270 581 aa12.19□□□□□ -0.46
USP39-214ENST00000474572 DAXXQ9UER7 740 aaPredicted RBP12.19□□□□□ -0.46
USP39-214ENST00000474572 PNMA6EA0A0J9YXQ4 647 aa12.18□□□□□ -0.46
USP39-214ENST00000474572 ALDH1L1O75891 902 aa12.18□□□□□ -0.46
USP39-214ENST00000474572 HSP90AB1P08238 724 aaKnown RBP12.18□□□□□ -0.46
USP39-214ENST00000474572 EIF2S2P20042 333 aaKnown RBP12.18□□□□□ -0.46
USP39-214ENST00000474572 CHRNA2Q15822 529 aa12.18□□□□□ -0.46
USP39-214ENST00000474572 ZNF790Q6PG37 636 aa12.18□□□□□ -0.46
USP39-214ENST00000474572 DCAF5Q96JK2 942 aa12.18□□□□□ -0.46
USP39-214ENST00000474572 PLCH1Q4KWH8 1693 aa12.18□□□□□ -0.46
USP39-214ENST00000474572 AHDC1Q5TGY3 1603 aaPredicted RBP12.18□□□□□ -0.46
USP39-214ENST00000474572 PI4KAP2A4QPH2 592 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms