RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 NUTM2AQ8IVF1 878 aaPredicted RBP16.87■□□□□ 0.29
CCDC88A-211ENST00000471947 CCDC8Q9H0W5 538 aaPredicted RBP16.87■□□□□ 0.29
CCDC88A-211ENST00000471947 IP6K1Q92551 441 aa16.87■□□□□ 0.29
CCDC88A-211ENST00000471947 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.87■□□□□ 0.29
CCDC88A-211ENST00000471947 GNAI3P08754 354 aa16.87■□□□□ 0.29
CCDC88A-211ENST00000471947 GSPT1P15170 499 aaKnown RBP16.87■□□□□ 0.29
CCDC88A-211ENST00000471947 CD2BP2O95400 341 aaKnown RBP16.86■□□□□ 0.29
CCDC88A-211ENST00000471947 CWC27Q6UX04 472 aaKnown RBP16.86■□□□□ 0.29
CCDC88A-211ENST00000471947 ANKRD44Q8N8A2 993 aa16.86■□□□□ 0.29
CCDC88A-211ENST00000471947 KCNH5Q8NCM2 988 aa16.86■□□□□ 0.29
CCDC88A-211ENST00000471947 SBNO1A3KN83 1393 aa16.86■□□□□ 0.29
CCDC88A-211ENST00000471947 NDUFB9Q9Y6M9 179 aa16.86■□□□□ 0.29
CCDC88A-211ENST00000471947 AAMPQ13685 434 aa16.86■□□□□ 0.29
CCDC88A-211ENST00000471947 RPAP2Q8IXW5 612 aaPredicted RBP16.86■□□□□ 0.29
CCDC88A-211ENST00000471947 ATP7BP35670 1465 aa16.86■□□□□ 0.29
CCDC88A-211ENST00000471947 PPFIA3O75145 1194 aa16.85■□□□□ 0.29
CCDC88A-211ENST00000471947 CABP4P57796 275 aa16.85■□□□□ 0.29
CCDC88A-211ENST00000471947 INTS3Q68E01 1043 aaKnown RBP16.85■□□□□ 0.29
CCDC88A-211ENST00000471947 DNAAF4Q8WXU2 420 aa16.85■□□□□ 0.29
CCDC88A-211ENST00000471947 KIAA1210Q9ULL0 1709 aa16.84■□□□□ 0.29
CCDC88A-211ENST00000471947 ADAMTS2O95450 1211 aa16.84■□□□□ 0.29
CCDC88A-211ENST00000471947 MYD88Q99836 296 aa16.84■□□□□ 0.29
CCDC88A-211ENST00000471947 SPG7Q9UQ90 795 aa16.84■□□□□ 0.29
CCDC88A-211ENST00000471947 KIAA1211Q6ZU35 1233 aa16.84■□□□□ 0.29
CCDC88A-211ENST00000471947 ARHGAP45Q92619 1136 aa16.84■□□□□ 0.29
CCDC88A-211ENST00000471947 NEUROD6Q96NK8 337 aa16.84■□□□□ 0.29
CCDC88A-211ENST00000471947 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.84■□□□□ 0.29
CCDC88A-211ENST00000471947 IFIT2P09913 472 aaKnown RBP16.84■□□□□ 0.29
CCDC88A-211ENST00000471947 ZBTB3Q9H5J0 574 aa16.84■□□□□ 0.29
CCDC88A-211ENST00000471947 IQSEC2Q5JU85 1478 aa16.84■□□□□ 0.29
CCDC88A-211ENST00000471947 FOSBP53539 338 aa16.83■□□□□ 0.29
CCDC88A-211ENST00000471947 DCTPP1Q9H773 170 aa16.83■□□□□ 0.29
CCDC88A-211ENST00000471947 PIP4K2BP78356 416 aa16.83■□□□□ 0.28
CCDC88A-211ENST00000471947 C19orf44Q9H6X5 657 aa16.83■□□□□ 0.28
CCDC88A-211ENST00000471947 BMP2KLQ5H9B9 411 aa16.82■□□□□ 0.28
CCDC88A-211ENST00000471947 CHMP5Q9NZZ3 219 aa16.82■□□□□ 0.28
CCDC88A-211ENST00000471947 ABCC4O15439 1325 aa16.82■□□□□ 0.28
CCDC88A-211ENST00000471947 MX1P20591 662 aa16.82■□□□□ 0.28
CCDC88A-211ENST00000471947 NEXNQ0ZGT2 675 aa16.82■□□□□ 0.28
CCDC88A-211ENST00000471947 TTC22Q5TAA0 569 aa16.82■□□□□ 0.28
CCDC88A-211ENST00000471947 PLCB2Q00722 1185 aa16.81■□□□□ 0.28
CCDC88A-211ENST00000471947 COPS6Q7L5N1 327 aa16.81■□□□□ 0.28
CCDC88A-211ENST00000471947 MAP3K5Q99683 1374 aa16.81■□□□□ 0.28
CCDC88A-211ENST00000471947 MCTP1Q6DN14 999 aa16.81■□□□□ 0.28
CCDC88A-211ENST00000471947 SIRT1Q96EB6 747 aa16.81■□□□□ 0.28
CCDC88A-211ENST00000471947 AATKQ6ZMQ8 1374 aa16.81■□□□□ 0.28
CCDC88A-211ENST00000471947 MAP2P11137 1827 aaKnown RBP16.81■□□□□ 0.28
CCDC88A-211ENST00000471947 SSFA2P28290 1259 aa16.81■□□□□ 0.28
CCDC88A-211ENST00000471947 TCEANC2Q96MN5 208 aa16.81■□□□□ 0.28
CCDC88A-211ENST00000471947 DNAJC2Q99543 621 aaKnown RBP16.81■□□□□ 0.28
CCDC88A-211ENST00000471947 BOLA2Q9H3K6 86 aa16.81■□□□□ 0.28
CCDC88A-211ENST00000471947 CPA1P15085 419 aa16.8■□□□□ 0.28
CCDC88A-211ENST00000471947 PDE1AP54750 535 aa16.8■□□□□ 0.28
CCDC88A-211ENST00000471947 FGD1P98174 961 aa16.8■□□□□ 0.28
CCDC88A-211ENST00000471947 AACSQ86V21 672 aa16.8■□□□□ 0.28
CCDC88A-211ENST00000471947 XAGE3Q8WTP9 111 aa16.8■□□□□ 0.28
CCDC88A-211ENST00000471947 IGSF1Q8N6C5 1336 aa16.8■□□□□ 0.28
CCDC88A-211ENST00000471947 G3BP1Q13283 466 aaKnown RBP eCLIP16.8■□□□□ 0.28
CCDC88A-211ENST00000471947 DIAPH3Q9NSV4 1193 aa16.8■□□□□ 0.28
CCDC88A-211ENST00000471947 KDM4AO75164 1064 aa16.8■□□□□ 0.28
CCDC88A-211ENST00000471947 USP44Q9H0E7 712 aa16.8■□□□□ 0.28
CCDC88A-211ENST00000471947 UNC5CLQ8IV45 518 aa16.79■□□□□ 0.28
CCDC88A-211ENST00000471947 RNMTO43148 476 aaKnown RBP16.79■□□□□ 0.28
CCDC88A-211ENST00000471947 UBE3BQ7Z3V4 1068 aa16.79■□□□□ 0.28
CCDC88A-211ENST00000471947 USP16Q9Y5T5 823 aa16.79■□□□□ 0.28
CCDC88A-211ENST00000471947 PTPRCP08575 1304 aa16.79■□□□□ 0.28
CCDC88A-211ENST00000471947 PIK3R4Q99570 1358 aa16.78■□□□□ 0.28
CCDC88A-211ENST00000471947 DDX49Q9Y6V7 483 aaKnown RBP16.78■□□□□ 0.28
CCDC88A-211ENST00000471947 GOLGA6L22H0YM25 854 aa16.78■□□□□ 0.28
CCDC88A-211ENST00000471947 EIF4A1P60842 406 aaKnown RBP16.78■□□□□ 0.28
CCDC88A-211ENST00000471947 CLASRPQ8N2M8 674 aaKnown RBP16.78■□□□□ 0.28
CCDC88A-211ENST00000471947 COL3A1P02461 1466 aaPredicted RBP16.77■□□□□ 0.28
CCDC88A-211ENST00000471947 ST18O60284 1047 aa16.77■□□□□ 0.28
CCDC88A-211ENST00000471947 TRAK2O60296 914 aa16.77■□□□□ 0.28
CCDC88A-211ENST00000471947 REC8O95072 547 aa16.77■□□□□ 0.28
CCDC88A-211ENST00000471947 MPNDQ8N594 471 aa16.77■□□□□ 0.28
CCDC88A-211ENST00000471947 ZGPATQ8N5A5 531 aaKnown RBP16.77■□□□□ 0.28
CCDC88A-211ENST00000471947 RTL1A6NKG5 1358 aa16.77■□□□□ 0.28
CCDC88A-211ENST00000471947 MCCP23508 829 aa16.77■□□□□ 0.27
CCDC88A-211ENST00000471947 ZNF496Q96IT1 587 aaPredicted RBP16.77■□□□□ 0.27
CCDC88A-211ENST00000471947 TMEM94Q12767 1356 aa16.76■□□□□ 0.27
CCDC88A-211ENST00000471947 IFT172Q9UG01 1749 aa16.76■□□□□ 0.27
CCDC88A-211ENST00000471947 EDC3Q96F86 508 aaKnown RBP16.76■□□□□ 0.27
CCDC88A-211ENST00000471947 DBF4Q9UBU7 674 aaPredicted RBP16.76■□□□□ 0.27
CCDC88A-211ENST00000471947 GPTP24298 496 aa16.76■□□□□ 0.27
CCDC88A-211ENST00000471947 GDPD2Q9HCC8 539 aa16.76■□□□□ 0.27
CCDC88A-211ENST00000471947 CDK12Q9NYV4 1490 aaPredicted RBP16.76■□□□□ 0.27
CCDC88A-211ENST00000471947 K7ELQ4 463 aaPredicted RBP16.75■□□□□ 0.27
CCDC88A-211ENST00000471947 ERC2O15083 957 aa16.75■□□□□ 0.27
CCDC88A-211ENST00000471947 DDX58O95786 925 aaKnown RBP16.75■□□□□ 0.27
CCDC88A-211ENST00000471947 TAF7LQ5H9L4 462 aa16.75■□□□□ 0.27
CCDC88A-211ENST00000471947 AKAP4Q5JQC9 854 aa16.75■□□□□ 0.27
CCDC88A-211ENST00000471947 MCM4P33991 863 aa16.75■□□□□ 0.27
CCDC88A-211ENST00000471947 GORABQ5T7V8 394 aa16.75■□□□□ 0.27
CCDC88A-211ENST00000471947 ARHGEF25Q86VW2 580 aa16.74■□□□□ 0.27
CCDC88A-211ENST00000471947 RHPN1Q8TCX5 695 aa16.74■□□□□ 0.27
CCDC88A-211ENST00000471947 SPATA31D1Q6ZQQ2 1576 aa16.74■□□□□ 0.27
CCDC88A-211ENST00000471947 TNPO1Q92973 898 aaKnown RBP16.74■□□□□ 0.27
CCDC88A-211ENST00000471947 SHPRHQ149N8 1683 aa16.73■□□□□ 0.27
CCDC88A-211ENST00000471947 A1BGP04217 495 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms