RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 CAVIN4Q5BKX8 364 aa15.44■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 CCDC150Q8NCX0 1101 aa15.44■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 CACNA2D4Q7Z3S7 1137 aa15.44■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 CDKL5O76039 1030 aa15.44■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 TXLNBQ8N3L3 684 aa15.44■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 CABP1Q9NZU7 370 aa15.44■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 PDZRN3Q9UPQ7 1066 aa15.44■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 RPGRQ92834 1020 aaKnown RBP15.44■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 SRCIN1Q9C0H9 1055 aa15.44■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 C6orf229H3BNL8 230 aa15.43■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 MCM2P49736 904 aa15.43■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 MRE11P49959 708 aa15.43■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 MYO10Q9HD67 2058 aa15.43■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 FERMT2Q96AC1 680 aa15.43■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 CASTP20810 708 aaKnown RBP15.42■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 ARHGAP29Q52LW3 1261 aa15.42■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 LARP1Q6PKG0 1096 aaKnown RBP15.42■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 HOOK3Q86VS8 718 aa15.42■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 ZNF444Q8N0Y2 327 aaPredicted RBP15.42■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 SLC12A5Q9H2X9 1139 aa15.42■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 CCDC66A2RUB6 948 aa15.42■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 ZNF652Q9Y2D9 606 aa15.42■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 UPF3BQ9BZI7 483 aaKnown RBP15.42■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 MMRN2Q9H8L6 949 aa15.42■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 NGLY1Q96IV0 654 aa15.42■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 PDRG1Q9NUG6 133 aa15.42■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 BMS1Q14692 1282 aaKnown RBP15.41■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 TIGD1Q96MW7 591 aa15.41■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 IMMTQ16891 758 aaKnown RBP15.41■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 NUTM1Q86Y26 1132 aa15.41■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 CCDC144CPQ8IYA2 1237 aa15.41■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 RAD54L2Q9Y4B4 1467 aa15.41■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 AFAP1Q8N556 730 aa15.41■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 GIMAP7Q8NHV1 300 aa15.41■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 CCT4P50991 539 aaKnown RBP15.4■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 ZNF622Q969S3 477 aaKnown RBP eCLIP15.4■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 ZNF287Q9HBT7 754 aa15.4■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 SH3BP5O60239 455 aa15.4■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 FERMT3Q86UX7 667 aa15.4■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 NAPBQ9H115 298 aa15.4■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 CLEC11AQ9Y240 323 aa15.4■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 SLU7O95391 586 aaKnown RBP15.4■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 PRPF4BQ13523 1007 aaKnown RBP15.4■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 CUL5Q93034 780 aa15.4■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 BOLA2Q9H3K6 86 aa15.4■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 IQCEQ6IPM2 695 aa15.4■□□□□ 0.06
NPHP3-ACAD11-201ENST00000471702 AEBP1Q8IUX7 1158 aa15.39■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 CBFA2T2O43439 604 aa15.39■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 TMOD3Q9NYL9 352 aa15.39■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 IFFO1Q0D2I5 559 aa15.39■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 THEMISQ8N1K5 641 aaPredicted RBP15.39■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 RAPGEF2Q9Y4G8 1499 aa15.39■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 TCERG1LQ5VWI1 586 aa15.39■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 CTNNA3Q9UI47 895 aa15.39■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 ERLIN1O75477 346 aa15.39■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 GPTP24298 496 aa15.39■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 SPA17Q15506 151 aa15.39■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 EXOC6BQ9Y2D4 811 aa15.38■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 ANKRD18BA2A2Z9 1011 aa15.38■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 WDR33Q9C0J8 1336 aaKnown RBP15.38■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 TDRD12Q587J7 1177 aaKnown RBP15.38■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 GIGYF2Q6Y7W6 1299 aaKnown RBP15.38■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 C16orf71Q8IYS4 520 aaPredicted RBP15.38■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 USHBP1Q8N6Y0 703 aa15.37■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 CKAP2LQ8IYA6 745 aa15.37■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 ARHGAP5Q13017 1502 aa15.37■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 FERP16591 822 aa15.37■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 LUZP1Q86V48 1076 aa15.37■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 RAB3IL1Q8TBN0 382 aa15.37■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 SYCP3Q8IZU3 236 aa15.37■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 LARP6Q9BRS8 491 aaKnown RBP15.37■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 LMAN1P49257 510 aa15.37■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 PPFIA3O75145 1194 aa15.37■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 CPLX3Q8WVH0 158 aa15.37■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 GTPBP4Q9BZE4 634 aaKnown RBP15.37■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 CRACR2AQ9BSW2 395 aa15.36■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 CCDC148Q8NFR7 591 aa15.36■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 NUP62CLQ9H1M0 184 aa15.36■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 SEPT10Q9P0V9 454 aa15.36■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 TMCO5BA8MYB1 307 aa15.36■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 SPECC1Q5M775 1068 aa15.36■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 ANKLE2Q86XL3 938 aa15.36■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 TICAM2Q86XR7 235 aa15.36■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 TSG101Q99816 390 aa15.36■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 CEP131Q9UPN4 1083 aa15.36■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 TMCO3Q6UWJ1 677 aa15.36■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 PPP1R9BQ96SB3 815 aa15.36■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 WIZO95785 1651 aa15.35■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 ISM2Q6H9L7 571 aa15.35■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 BRPF3Q9ULD4 1205 aa15.35■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 MYD88Q99836 296 aa15.35■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 KIF20AO95235 890 aa15.35■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 FKBP15Q5T1M5 1219 aa15.35■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 DPH6Q7L8W6 267 aa15.35■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 C11orf95C9JLR9 678 aaPredicted RBP15.35■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 IFIT1P09914 478 aaKnown RBP15.34■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 WASF1Q92558 559 aa15.34■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 GCC1Q96CN9 775 aa15.34■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 BICD1Q96G01 975 aa15.34■□□□□ 0.05
NPHP3-ACAD11-201ENST00000471702 BIRC2Q13490 618 aa15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms