RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 PSDA5PKW4 1024 aaPredicted RBP20.25■□□□□ 0.83
SDC3-203ENST00000471567 ANO8Q9HCE9 1232 aaPredicted RBP20.25■□□□□ 0.83
SDC3-203ENST00000471567 CEMIPQ8WUJ3 1361 aa20.24■□□□□ 0.83
SDC3-203ENST00000471567 LOC102724428A0A0B4J2F2 783 aa20.24■□□□□ 0.83
SDC3-203ENST00000471567 SIK1P57059 783 aa20.24■□□□□ 0.83
SDC3-203ENST00000471567 NFE2L2Q16236 605 aa20.24■□□□□ 0.83
SDC3-203ENST00000471567 SLC15A2Q16348 729 aa20.24■□□□□ 0.83
SDC3-203ENST00000471567 RTF1Q92541 710 aaKnown RBP20.24■□□□□ 0.83
SDC3-203ENST00000471567 ADAMTS8Q9UP79 889 aa20.24■□□□□ 0.83
SDC3-203ENST00000471567 PAPPAQ13219 1627 aa20.24■□□□□ 0.83
SDC3-203ENST00000471567 KCNQ4P56696 695 aa20.23■□□□□ 0.83
SDC3-203ENST00000471567 TEFQ10587 303 aa20.23■□□□□ 0.83
SDC3-203ENST00000471567 AKT1S1Q96B36 256 aa20.22■□□□□ 0.83
SDC3-203ENST00000471567 RUNDC1Q96C34 613 aa20.22■□□□□ 0.83
SDC3-203ENST00000471567 VIRMAQ69YN4 1812 aaKnown RBP20.21■□□□□ 0.83
SDC3-203ENST00000471567 CCDC184Q52MB2 194 aa20.21■□□□□ 0.83
SDC3-203ENST00000471567 ATP6V1AP38606 617 aa20.19■□□□□ 0.82
SDC3-203ENST00000471567 ZNF827Q17R98 1081 aa20.19■□□□□ 0.82
SDC3-203ENST00000471567 RBM42Q9BTD8 480 aaKnown RBP20.19■□□□□ 0.82
SDC3-203ENST00000471567 MRS2Q9HD23 443 aa20.19■□□□□ 0.82
SDC3-203ENST00000471567 MCM10Q7L590 875 aa20.18■□□□□ 0.82
SDC3-203ENST00000471567 ZNF831Q5JPB2 1677 aa20.17■□□□□ 0.82
SDC3-203ENST00000471567 TMPOP42166 694 aaKnown RBP20.17■□□□□ 0.82
SDC3-203ENST00000471567 CCDC146Q8IYE0 955 aa20.17■□□□□ 0.82
SDC3-203ENST00000471567 PNISRQ8TF01 805 aaKnown RBP20.17■□□□□ 0.82
SDC3-203ENST00000471567 SLC4A9Q96Q91 983 aa20.17■□□□□ 0.82
SDC3-203ENST00000471567 PTCD1O75127 700 aaKnown RBP20.16■□□□□ 0.82
SDC3-203ENST00000471567 RIPK4P57078 832 aa20.16■□□□□ 0.82
SDC3-203ENST00000471567 SLC39A6Q13433 755 aa20.16■□□□□ 0.82
SDC3-203ENST00000471567 ITPK1Q13572 414 aa20.16■□□□□ 0.82
SDC3-203ENST00000471567 DCTN1Q14203 1278 aa20.16■□□□□ 0.82
SDC3-203ENST00000471567 TFCP2L1Q9NZI6 479 aa20.16■□□□□ 0.82
SDC3-203ENST00000471567 C5P01031 1676 aa20.16■□□□□ 0.82
SDC3-203ENST00000471567 TAF1LQ8IZX4 1826 aa20.16■□□□□ 0.82
SDC3-203ENST00000471567 LMOD3Q0VAK6 560 aa20.15■□□□□ 0.82
SDC3-203ENST00000471567 TTC5Q8N0Z6 440 aa20.15■□□□□ 0.82
SDC3-203ENST00000471567 LINC00116Q8NCU8 138 aa20.15■□□□□ 0.82
SDC3-203ENST00000471567 DLG5Q8TDM6 1919 aa20.15■□□□□ 0.82
SDC3-203ENST00000471567 SIPA1L3O60292 1781 aaPredicted RBP20.14■□□□□ 0.81
SDC3-203ENST00000471567 BTBD11A6QL63 1104 aa20.14■□□□□ 0.81
SDC3-203ENST00000471567 ZNF790Q6PG37 636 aa20.14■□□□□ 0.81
SDC3-203ENST00000471567 TAF7Q15545 349 aaPredicted RBP20.13■□□□□ 0.81
SDC3-203ENST00000471567 VSIG10Q8N0Z9 540 aa20.13■□□□□ 0.81
SDC3-203ENST00000471567 AK7Q96M32 723 aa20.13■□□□□ 0.81
SDC3-203ENST00000471567 RC3H1Q5TC82 1133 aaKnown RBP20.12■□□□□ 0.81
SDC3-203ENST00000471567 FLAD1Q8NFF5 587 aa20.12■□□□□ 0.81
SDC3-203ENST00000471567 C4BP0C0L5 1744 aa20.12■□□□□ 0.81
SDC3-203ENST00000471567 QSER1Q2KHR3 1735 aa20.12■□□□□ 0.81
SDC3-203ENST00000471567 KCPQ6ZWJ8 1503 aa20.12■□□□□ 0.81
SDC3-203ENST00000471567 PNPLA7Q6ZV29 1317 aa20.11■□□□□ 0.81
SDC3-203ENST00000471567 CASZ1Q86V15 1759 aa20.11■□□□□ 0.81
SDC3-203ENST00000471567 CICQ96RK0 1608 aaPredicted RBP20.1■□□□□ 0.81
SDC3-203ENST00000471567 CNTNAP4Q9C0A0 1308 aa20.1■□□□□ 0.81
SDC3-203ENST00000471567 SLC16A10Q8TF71 515 aa20.1■□□□□ 0.81
SDC3-203ENST00000471567 PDGFDQ9GZP0 370 aaPredicted RBP20.1■□□□□ 0.81
SDC3-203ENST00000471567 RRP7AQ9Y3A4 280 aaKnown RBP20.1■□□□□ 0.81
SDC3-203ENST00000471567 UBR2Q8IWV8 1755 aa20.09■□□□□ 0.81
SDC3-203ENST00000471567 NEUROD2Q15784 382 aa20.09■□□□□ 0.81
SDC3-203ENST00000471567 ZNF496Q96IT1 587 aaPredicted RBP20.09■□□□□ 0.81
SDC3-203ENST00000471567 FMNL2Q96PY5 1086 aa20.09■□□□□ 0.81
SDC3-203ENST00000471567 APAF1O14727 1248 aa20.08■□□□□ 0.81
SDC3-203ENST00000471567 DNAJC10Q8IXB1 793 aa20.08■□□□□ 0.81
SDC3-203ENST00000471567 THUMPD2Q9BTF0 503 aaKnown RBP20.08■□□□□ 0.81
SDC3-203ENST00000471567 TEX13AQ9BXU3 409 aaPredicted RBP20.08■□□□□ 0.81
SDC3-203ENST00000471567 SPON1Q9HCB6 807 aa20.08■□□□□ 0.81
SDC3-203ENST00000471567 HEG1Q9ULI3 1381 aa20.08■□□□□ 0.8
SDC3-203ENST00000471567 GNPATO15228 680 aa20.07■□□□□ 0.8
SDC3-203ENST00000471567 KCNQ3O43525 872 aa20.07■□□□□ 0.8
SDC3-203ENST00000471567 SSFA2P28290 1259 aa20.07■□□□□ 0.8
SDC3-203ENST00000471567 COL23A1Q86Y22 540 aaPredicted RBP20.07■□□□□ 0.8
SDC3-203ENST00000471567 MTFR1LQ9H019 292 aa20.07■□□□□ 0.8
SDC3-203ENST00000471567 BABAM1Q9NWV8 329 aa20.07■□□□□ 0.8
SDC3-203ENST00000471567 TRIM35Q9UPQ4 493 aa20.07■□□□□ 0.8
SDC3-203ENST00000471567 COL5A3P25940 1745 aaPredicted RBP20.07■□□□□ 0.8
SDC3-203ENST00000471567 TUBGCP6Q96RT7 1819 aa20.06■□□□□ 0.8
SDC3-203ENST00000471567 CRKLP46109 303 aaKnown RBP20.06■□□□□ 0.8
SDC3-203ENST00000471567 TJP1Q07157 1748 aa20.06■□□□□ 0.8
SDC3-203ENST00000471567 LRP5O75197 1615 aa20.05■□□□□ 0.8
SDC3-203ENST00000471567 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.05■□□□□ 0.8
SDC3-203ENST00000471567 RPS6KA4O75676 772 aa20.05■□□□□ 0.8
SDC3-203ENST00000471567 ZBTB7AO95365 584 aa20.05■□□□□ 0.8
SDC3-203ENST00000471567 CYP19A1P11511 503 aaPredicted RBP20.05■□□□□ 0.8
SDC3-203ENST00000471567 DIEXFQ68CQ4 756 aaKnown RBP20.05■□□□□ 0.8
SDC3-203ENST00000471567 RTCBQ9Y3I0 505 aaKnown RBP20.05■□□□□ 0.8
SDC3-203ENST00000471567 CCER2I3L3R5 266 aa20.04■□□□□ 0.8
SDC3-203ENST00000471567 STARD3NLO95772 234 aa20.04■□□□□ 0.8
SDC3-203ENST00000471567 ADRA2BP18089 450 aa20.04■□□□□ 0.8
SDC3-203ENST00000471567 MIS18AQ9NYP9 233 aa20.04■□□□□ 0.8
SDC3-203ENST00000471567 UBR3Q6ZT12 1888 aa20.04■□□□□ 0.8
SDC3-203ENST00000471567 MSH5O43196 834 aa20.03■□□□□ 0.8
SDC3-203ENST00000471567 NCBP3Q53F19 620 aaKnown RBP20.03■□□□□ 0.8
SDC3-203ENST00000471567 INTS5Q6P9B9 1019 aaKnown RBP20.03■□□□□ 0.8
SDC3-203ENST00000471567 AMIGO3Q86WK7 504 aa20.03■□□□□ 0.8
SDC3-203ENST00000471567 CCDC87Q9NVE4 849 aa20.03■□□□□ 0.8
SDC3-203ENST00000471567 PHF14O94880 888 aa20.02■□□□□ 0.8
SDC3-203ENST00000471567 SNRPA1P09661 255 aaKnown RBP20.02■□□□□ 0.8
SDC3-203ENST00000471567 TRAPPC3LQ5T215 181 aa20.02■□□□□ 0.8
SDC3-203ENST00000471567 ATF5Q9Y2D1 282 aaPredicted RBP20.02■□□□□ 0.8
SDC3-203ENST00000471567 MYH14Q7Z406 1995 aaKnown RBP20.01■□□□□ 0.79
SDC3-203ENST00000471567 FAM9BQ8IZU0 186 aa20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms